Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100               ----------->RAV1(1)             <<<<<<<<<<<<<<<<<LFY       ------->GAMYB    <---------ALFIN1  ------>ZmHOX2a(1) --------->TOE2(3)                                                   ---------->DOF2 ------DOF2 ----------->HVH21                       --------->AHL20(2)           --------->YAB1 ----ICU4 --------->ANAC46                   <---------GLK1(2)  <----------ID1  <---------YAB1     <-   tttcctcaaccctcgcgacattggactcagatagcttcacttcttcagaaacttttaaataagatgaagacaaaagagagacatcatagtaatcttccct  6174600                                     <---------At4g35610                                     --------->At4g35610                                    ----------->RAV1(1)                                  <------NtERF2                                 --------->LBD16                                 <---------ATERF1(1)                                 ------>NtERF2                                --------->ATERF1(2)                                --------->DEAR3(1)                                --------->DREB2C(2)                                --------->RRTF1(3)                                --------->RAP2.3(3)                                --------->RAP2.3(2)                                <---------ATERF1(2)                                --------->RAP2.6(2)                                --------->RRTF1(2)                               --------->RRTF1(1)                               --------->RAP2.3(1)                               <------NtERF2                               --------->ATERF1(1)                               --------->ERF1                               <---------LBD16                               --------->ORA47(2)                              <---------RAP2.3(1)                              <---------ATERF1(1)                              ------>NtERF2                              --------->ABI4(1)                             --------->RAP2.3(2)                             --------->RAP2.3(3)                             --------->ATERF1(2)                             --------->DEAR3(1)                             <---------DEAR3(1)                             <---------ATERF1(2)                            --------->ORA47(2)       <---------ANAC55(1)  --------->RAP2.3(1)                ------>NtERF2       <---------ANAC58     --------->ERF1                     --------->ABI4(1)       <---------O2         --------->DEAR4(2)                --------->DEAR3(1)       <---------ANAC46     --------->ATERF1(1)               --------->ANAC46       --------->O2        <---------RAP2.3(1)                <---------ALFIN1       <---------ANAC58  --------->ATERF1(1)    <---------ANAC58                                  <--       <---------ANAC55(2) <---------ATERF1(1)  <---------ANAC58        --------->CCA1(2)      <-----  <------ZmHOX2a(1)    <---------ANAC58   --------->GLK1(2) <---------At5g28300                ------ -----ZmHOX2a(1)       <---------ANAC58  <---------GLK1(2) <-----------GT1              <---------ANAC46   aggaggaagacgtgtataagtagtggcttcgccgccggcatcagaaactggctggagtttatcaccgcctcgagatttaagctcgacttcgcgttgaagc  6174700                                                                ------>ZmHOX2a(1)                                                           --------->TOE2(1)                                                   <---------ARR14(2)                                                   --------->ARR14(2)                                      >>>>>>>GRF7  <---------ARR11(3)                                   <-----------HVH21       --------->TOE1(1)                           --------->LBD16         <-----------ARR10                          --------->ANAC46         <---------ARR14(3)                         <---------HSFB2a(2)       --------->ARR14(3)                       <--------       --------->HSFB2a(2)--------->LBD16          --------->GLK1(2)              <---------ANAC58 -----TEIL               --------->HSFB2a(2)       --------->ARR11(3)  --------->ALFIN1  <---------ANAC46 ----HSFC1(2)      --------->ARR14(2)<-----------RAV1(2)  ------>ZmHOX2a(1)       <---------ANAC58 --->HSFC1(2)  <---------ANAC46 <----------DOF2  ----------->ARR10    <-----------HVH21 <------ZmHOX2a(1)   ttcgtttttctagggcttcgggttcttcccgagactttgtcaggtttagcgaaaatcttcctcgtcctactgggtcgggctagagcttgaggagtgaaga  6174800                                                  <----------DOF2                                          --------->MYB52(1)                                       --------->YAB1 --------->ANAC55(2)                --------->ANAC58       --------->TOE1(3)                --------->ANAC58     <---------ARR11(3)          --------->CCA1(2)          --------->ARR11(3)        --------->ANAC46                     -         --------->ARR14(2)        *TSS--------->TOE2(3)       <-----------GT1     <------------CBF-- -ZAT14  <---------ARR14(2)     --------->YAB1    <---------DAG2        --------------->AtSPL8-------   aacagttaatggatatggaagccatttgtttctctgataaatcttaacgggactttatgtgatataaacaacattttgtactaaatattgatttttcaaa  6174900                                                                                                  *TSS                                                                                                 <---             <<<<<<<<<ARR2 <---------AHL20(2)                                               ------>ZmHOX2a(2)             <---------ATHB12                                                              <---------GLK1(1)      <-------GAMYB    <---------ZAT6                                                     --------->ARR14(2)     ----------->GT1 ----------->GT1   <-----------TBP                 <----------DOF2    <---------AGP1 -------->DAG2  ---------->DOF2    <------ZmHOX2a(1)                  --------->TOE2(3)   --------->ARR11(3) -------->DOF2--------->YAB1 <------------CBF                      <-----------GT1        <---------ARR14(2) --->DOF2------------>CBF --------->AHL20(2)                 <----------DOF2             <---------CCA1(2)   gtaaagggggttacaatcaaaagtagtataaaattgaggacttatatagcaaacaaggagaaacttttattacctttgaagtttgaagcttggatctcgc  6175000                                              --------->ARR14(2)                                          <---------TOE2(3)                                      <---------DAG2                                      <----------DOF2                                  <---------ZAT18                                  --------->ZAT18                                  <------NtERF2   <---------At4g35610                                  --------->ATERF1(1)                                 <---------DEAR4(2)                                 <---------ATERF1(1)      ------>ZmHOX2a(1)                <---------                                --------->ALFIN1  <---------ZAT14                  <---------TOE2(3)                                <---------RAP2.3(3)   --------->ARR14(2)           <---------TOE1(3)                                <---------RAP2.3(2)   <---------ARR14(2)     <---------------AGL15         --------->LBD16        <---------DEAR3(1)--------->ZAT14            --------------->AGL15    --------->At4g35610      --------->DAG2   <---------ARR14(2)            =========================    <---------At4g35610    ---------->DOF2<---------TOE1(3)                 <-----------------AGL2 ------TOE2(2) <xxxxxxxxxxxxxxxxsmallRNA(i)  <---------GLK1(1)              <-----------------AGL3  -   agattgagctccagagagggagagagagagaaagggggcgctttagggtttctgcagttcctggttcagtctcaccattctatttaagggttttaatctc  6175100                                                --------->LBD16  ------>ZmHOX2a(2)                                                <---------HSFB2a(2)      <---------MYB46(3)              <---------MYB52(2)            ------>ZmHOX2a(2)   <------ZmHOX2a(2)         <------MYB83                      --------->GLK1(1)   <---------AGP1         <------MYB46(1)                   <---------GLK1(1)   <---------ARR14(2)    --------->ATHB12                       <------ZmHOX2a(2)   --------->ARR11(3)  --------------->AGL15                   <---------ARR14(2)   --------->GLK1(2)  <---------------AGL15                   --------->ARR14(2)   <-----------ARR10  <----------DOF2                         --------->ARR11(3)   --------->ARR14(2) <-----------------AGL3                   <---------ARR11(3)  <---------ARR14(1)        <-------TEIL --GT1   ----------->GT1           <---------MYB46(3)         <---------CCA1(2)     <---------YAB1 =================MADS_MADS      <-------GAMYB  --------->HSFB2a(2)     <---------AtMYB61      ------ -------->At4g35610--------->TOE2(3) ----------->HVH21     <---------LBD16        --------->YAB1   --   tctgcttcatttggtgactaacatttatcgtcgagggttgtgacgatctccgagaatgtatagcggatctagcgatggtgagagtcatgatacatcgacg  6175200                                                                     --------->LBD16                 ------>NtERF2                                      <---------ANAC46                <---------ANAC46                                   <-----------------AG             --------->DEAR3(1)                                    ==================================             --------->DREB2C(2)                                   <-----------------AGL1            --------->DEAR3(2)                                     <------NtERF2          <---------ALFIN1                                         --------->ATERF1(1)        ------>ZmHOX2a(2)                                          ----------------->AGL1       <------ZmHOX2a(2)                                           <---------LBD16      <---------ARR14(2)                                          ------>NtERF2      <---------ARR11(3)                                         --------->ALFIN1      <-----------ARR10                                          ----------->HVH21      --------->ARR11(3)                                       <---------At4g35610      --------->ARR14(2)                                       --------->LBD16     <---------HSFC1(2)                                  <---------MYB46(3)           ---------------     --------->HSFB2a(1)                            --------->ARR11(3)                <--------------     --------->HSFC1(2)                             <---------ARR11(3)           --------->LBD16     <---------HSFB2a(1)                            --------->AHL20(1)         ------>ZmHOX2a(2)  <------ZmHOX2a(1)                                 <---------AHL20(1)        <------ZmHOX2a(2)  =============HOX2a_HOX2a  <----------DOF2  --------->ANAC46<---------LBD16<------ZmHOX2a(1) --->ANAC46--------->MYB52(1)             --------->TOE1(2)--------->ARR14(2)--------->ARR14(2) ------->At4g35610<------NtERF2           --------->TOE2(2)<---------ARR14(2)<---------ARR14(2)   cagaggaagatcccaccggcgtcttcgatgctttgggttagaaatctacgacgatatattggttccggtgccggattaggatccgaagctctaatgggta  6175300                            --------->MYB111(1)                            --------->MYB111(2)                            --------->MYB55(2)                          <---------ANAC58                          <---------ANAC58                    <----------DOF2                   <---------ANAC58                   <---------ANAC58               <-------GAMYB<---------MYB46(3)              --------->MYB111(2)              <-----------RAV1(1)              --------->MYB52(2)              --------->MYB55(2)              <---------MYB46(3)             <---------MYB55(1)             <--------P   <-------GAMYB                                 --------->TGA2(1)            <-------GAMYB<---------MYB46(3)                             --------->bZIP60(1)            <---------MYB52(1)                                          <---------TGA2(1)    <----------DOF2<---------ANAC46                           <---------ANAC58   --------->GLK1(2) =MADS_MADS<---------MYB46(3)                           <----------DOF2 <---------bZIP60(1)    <----- >AGL15   <---------ATERF1(2)<-------GAMYB          <-----------GT1  --------->ICU4    ---------->DOF2 -AGL15  <---------LBD16<---------AtMYB61 <---------ZAT14     <---------ANAC58--------->AHL20(2)-----   atgttccttttgccggttgttgcgttttggttgttgggacagtctgtagtttttttatcttttagcttgtgatgatgtcataaattctgtaaagtttgaa  6175400                                                --------->LBD16                                                ------>ZmHOX2a(1)                        <---------ANAC46    --------->ARR11(3) ----CCA1(2)         <---------MYB52(1) ---------->DOF2 <---------AtLEC2                 <---------YAB1 -->TEIL            <-------GAMYB  <---------YAB1     <-----------GT1          <---------YAB1      <-   tctttgatcacattttagagctcgttgtgttttcaatatgagtaaagttcctgaatttacatgtctatgtattgaaagactatgtttaactgtgatagag  6175500  Previous    Next  AGI:  At5g18570.1    Description:  GTP1/OBG family protein. similar to GTP binding [Arabidopsis thaliana] (TAIR:AT1G07615.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN76164.1); contains InterPro domain GTP-binding protein Obg/CgtA (InterPro:IPR014100); contains InterPro domain GTP1/OBG, conserved site; (InterPro:IPR006074); contains InterPro domain GTP-binding protein, HSR1-related; (InterPro:IPR002917); contains InterPro domain GTP1/OBG subdomain; (InterPro:IPR006169); contains InterPro domain GTP-binding protein GTP1/OBG, C-terminal; (InterPro:IPR015349); contains InterPro domain GTP1/OBG; (InterPro:IPR006073) Range:  from: 6171663    to: 6174835    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g18580.1    Description:  FASS (FASS 1). similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT5G28850.2); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ60510.1); similar to hypothetical protein OsI_017798 [Oryza sativa (indica cultivar-group)] (GB:EAY96565.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71006.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) Range:  from: 6174998    to: 6178403    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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