Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                         --------->GLK1(1)                                                                       <------ZmHOX2a(2)                                                                       <---------GLK1(1)                                                                      <---------ARR14(3)                                                                      --------->GLK1(2)                                                                      --------->ARR11(3)                                                                      <---------ARR11(3)                                                                      <-----------ARR10                                                               ----------->RAV1(2)                                                            <---------ALFIN1                                        <----------DOF2    <---------ZAT18                              <---------ZAT2       --------->GLK1(1)  <---------AGP1                     <-----------GT1  <---------HSFC1(2)--------->ANAC58               ----------->GT1--------->At4g35610  --------->CCA1(2)  --------->ARR14(2)              <---------YAB1  --------->ZAT2      <---------ARR11(3)  <---------ARR14(2)          ---              <---------TOE1(3)       --------->HSFC1(2)--------->ANAC58------>ZmHOX2a(2)         <--              <---------TOE2(3)      --------->GLK1(2) --------->WOX13(1)                     -------           <---------YAB1     <---------At4g35610 --------->ARR11(3) <------ZmHOX2a(1)       --------   agtatgtagcattgttatggttaaaacctttctgctgagaagctttgttgaagatatcaagcacaccctgaggatctctctctcgtttcatcaaactgac  6130600                                                                      <---------ANAC58                                                                      <---------ANAC58                                                                  <---------ANAC46                                                                <---------MYB46(3)     <---------ANAC46                                   --------->ARR14(2)     <---------ANAC58                                   <---------ARR14(2)     <---------ANAC58                                   <---------GLK1(2)<------MYB83    <-------TEIL                                  --------->CCA1(2)<---------ZAT18  <---------GLK1(2)                        --------->TGA1a      --------->MYB55(2)             ------  --------->ARR14(2)                       --------->ZAT2      <---------AtMYB61               ------  <---------ARR14(2)                       <---------ZAT2--------->GLK1(2)                 <---------HSFB2a(2) ------>At4g35610                          <---------TGA1a     --------->ALFIN1            --------->HSFB2a(2) -------At4g35610                        ===============================RAV        <<<<<<<<<TBF1 -->MYB52(1)                             <-----------RAV1(2)<-----------RAV1(1) <<<<<<<<<TBF1-------- --->HVH21                       --------->MYB52(2)    <------ZmHOX2a(1) <------MYB46(1)   --------->LBD16   agcagattcgtgagagataaacttggttttggggtttgtttccacaggtgagatagaggattctggtggtgggcttggtttcttcttcttctccgagaag  6130700                     --------->REM1(2)                  ------>ZmHOX2a(2)               --------->YAB1                <---------ARR11(3)            --------->ATHB12                --------->ARR11(3)           <-------TEIL        --------->GLK1(1)            --------->LBD16       --------->ARR14(2)           --------->TOE1(2)       <---------ARR14(2)           --------->DEAR3(1)      <----------TaMYB80           --------->DEAR3(2)                              ------>ZmHOX2a(1) --->ANAC58   <---------ATHB12    --------->MYB52(1)<---------YAB1           ------->TEIL  --------->YAB1 --->ANAC58   <---------YAB1   ----------->ARR10<---------WOX13(1)          <---------CCA1(2) -->DOF2--------->CCA1(2)     --------->YAB1 <---------YAB1           --------->ZAT18     <---------ATHB12   caaatgggagatacccatgatcgtgaagacgatgagaaccggcgatgttcattgattatcgaagttgtgaagcgcattgtatctcctctgtaatcaagag  6130800                                                                                                    <                                                                                          <---------GLK1(1)                                                      --------->WOX13(1)                  --------->GLK1(1)               <------MYB46(1)                     --------->ANAC58                      --------->ARR14(2)               <------MYB83                        --------->ANAC58                      <---------ARR14(2)              <---------TOE2(3)                  ---------->DOF2                         <---------GLK1(2)              --------->MYB59          --------->TOE2(3)                                 --------->ARR11(3)      --------->At5g28300   ---------->DOF2   --------->TOE2(3)                          <---------ARR11(3)     ----------->GT1     ----------->GT1<----------DOF2   --------->ATHB12          --------->GLK1(2)   aagaagacagtaaaattaggttaagaagagtaaagctacttcctttaaacttaaagcaatccattggcattcaattgaacatgaagaatcagatattcga  6130900                            --------->SPL7                           <---------MYB52(1)                          <---------SPL7                      --------->DEAR3(1)                      --------->AtMYB61                      <---------ALFIN1                     --------->ATERF1(1)                     --------->MYB46(3)                     <------NtERF2                   --------->PCF2                  <------NtERF2                 <---------RAP2.3(1)                 <---------ATERF1(1)                --------->ANAC46                <---------RAP2.3(3)                <---------bZIP60(1)                --------->ATERF1(2)                --------->bZIP60(1)                <---------ATERF1(2)              --------->MYB52(1)             ----------->HVH21            <---------WOX13(1)  ----------->GT1                      <---------AHL20(2)     --------->ATHB12<---------ABI4(2)                              <---------YAB1   --------->TOE1(3)<---------ATERF1(1)                          --------->ICU4   <---------MYB59--------->ZAT18                             <---------YAB1   <---------DAG2------>NtERF2 <------ZmHOX2a(1)            ----------->GT1   --------->TOE2(3)------>NtERF2                       <---------TOE2(3) -----------GT1--------->RAP2.6(3)<---------ZAT6       ---------->DOF2                --------->GLK1(1)   tattaccttattggattgacggcaccaccgtaaggagtgataagttctatggtggattaaagttgtgatttttaatgggttttctcagaaatcgaaacag  6131000                                                                                             --------                                                                                             --------                                                                                            <--------                                                                                            ---------                                                                 <-------GAMYB              <--------                                                                <------MYB83               <---------SPL1(2)                                                                <------MYB46(1)            <---------SPL7                                                               --------->MYB59            <---------ANAC58                                                             --------->ARR14(2)           <---------ANAC58                                                             <---------MYB52(1)          ------------                                                             <---------ARR14(2)          <-----------                                                         <---------LBD16                <------------                                                <---------MYB46(3)<---------MYB52(1)   <-----------HVH21                                       --------->ZAT14 --------->ARR14(2)              --------------                 *TSS                  <---------ZAT14 <---------ARR14(2)            --------->LBD16            <---------ATHB12        <---------ANAC46  <---------GLK1(1)       --------->AHL20(2)    --------->TOE1(2)               <---------ANAC58  --------->GLK1(1)       <---------AHL20(2)  --------->ARR14(2)                <---------ANAC58 <xxxxxxxxxxxxxxxxsmallRNA(fl3) <---------LBD16  <---------ARR14(2)          <---------AtMYB61<---------AtMYB61----------->GT1<---------AHL20(2)   agcaaaactgcgaaatcaataaactcatcggagaggttgagtgaagacgatggtggaaatccggttcggttaattcaaaattaaatcccggtccgtacgg  6131100                                                                           ------>ZmHOX2a(2)      <---------YAB1                                                      <------ZmHOX2a(2) ->SPL7                                                                  <---------ARR11(3) ->SPL1(2)                                                               --------->ARR14(2) -MYB52(1)                  <------MYB46(1)                              <---------ARR14(3) >SPL1(1)                   ----------->GT1                              --------->ARR14(3) -SPL1(1)                   <------MYB83                                 <---------ARR14(2) --->AtSPL3                <---------AtMYB61                      <---------YAB1  <---------MYB46(3)< ----AtSPL3              <---------MYB52(1)                   <---------GLK1(1)<-----------RAV1(1)<-- ------SPL14        --------->MYB52(1)                <---------ANAC58   --------->ARR11(3)      ---- ---->SPL14----------->GT1 --------->MYB59            <---------ANAC58  <------ZmHOX2a(1) <---------YAB1   tttggattacaaatggttaaacccacggtttggtttaaaaatgtgtctcttctggttcttgttgaattctgataggatcttgtgttgttgttatgagaca  6131200                                                                                  ----------->HVH21                                                                                ----------->GT1                                                                            --------->ATHB12                                                                            <---------MYB46(3)        ---------->DOF2                              <---------MYB52(1)    <---------YAB1    ---------->DOF2    <-----------GT1              <-------GAMYB  <<<<<<<<<<<<<<<<<LFY <----------DOF2 --------->YAB1     <---------REM1(1)     --------->YAB1      ---------->DOF2 <---------WOX13(1) ----------ID1      --------->ALFIN1      --------->ATHB12  --------->HSFB2a(2) <------MYB46(1) -------ICU4   ---------->DOF2           <---------YAB1     <---------HSFB2a(2) <------MYB83 -------- ----->ICU4<----------ID1        --------->ANAC46  <-----------RAV1(1)   --------->YAB1 <---------DAG2   taatgacaaagaaagaacaaaggtgtaaccatttcaagacagaattataggctctgttgtttctgaaagttacaatggtgattggtgacacttttacata  6131300                                             <---------TGA1a                                             ============================bZIP_DOF                                             --------->O2                                             <---------O2                                             --------->TGA1a                                          ----------->HVH21              ==========================HOX2a_HOX2a                    <---------HSFC1(2)          =============================================MYC_MYB         --------->HSFC1(2)          ------->GAMYB                  <-----------HVH21    <----------DOF2               ---------        --------->At4g35610           <---------ANAC58     <---------ARR11(3)           --------->ZAT18        <---------At4g35610           <---------ANAC58  --------->HSFB2a(2)         --------->ALFIN1      --------->ETT(2)           ------>ZmHOX2a(2)      <---------HSFB2a(2)   <---------At5g28300 ->ANAC55(2)  <------ZmHOX2a(1)--------->ARR11(3)       --------->HSFC1(1)  ----------->HVH21    ----   ttttgttgtcaacagaggaaacatagggaatttgatctcgtcgtgtcacgacggtcttctagacctttcaagaaccatctcaccgcgaggtgctctgaag  6131400                                                ------>MYB46(1)                                                ------>MYB83                                                -------->P                                               ------>MYB46(1)                                             <---------MYB59                                             --------->MYB46(3)                      <---------ICU4        --------->ANAC46                     --------->ICU4----------->RAV1(1)                             <------ZmHOX2a(1)              <------NtERF2        ------>MYB46(1)                           --------->YAB1              --------->ZAT2       ------>MYB83------>MYB83            --------->ANAC58              <---------At4g35610 <---------ALFIN1                     --------->ANAC58      --------        --------->RAP2.6(3)       --------->ANAC46                     --------->ANAC46   --------->GLK1(2) -->HVH21     --------->At4g35610<---------MYB55(2)         --------->ANAC55(2)   <----------ID1 ----->YAB1   <---------ZAT2     --------->MYB46(3)         <---------ANAC55(2) --------->YAB1   cataagtcatgaaggcagctagaattatggctagacccaccattagacccaacctgttcaatatgtgataaaccagcaactataaggacaagaatgtgtt  6131500  Previous    Next  AGI:  At5g18475.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to MEE40 (maternal effect embryo arrest 40) [Arabidopsis thaliana] (TAIR:AT3G53700.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61629.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 6129239    to: 6131017    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g18480.1    Description:  PGSIP6 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 6); transferase, transferring glycosyl groups / transferase, transferring hexosyl groups. similar to PGSIP5 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 5), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G08990.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65058.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495) Range:  from: 6131205    to: 6133908    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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