Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                   --------->ANAC58                           ------>NtERF2                           --------->LBD16                         ------>ZmHOX2a(2)                         --------->MYB46(3)                         =========================HOX2a_HOX2a                        ==========================HOX2a_HOX2a                        <------ZmHOX2a(2)                        <---------ATERF1(1)       --------->At4g35610--------->ANAC58       <---------At4g35610--------->ANAC46                                 ------>ZmHOX2a(1)     <---------DEAR3(1)--------->ARR14(2)                        --------->TOE2(3) -->MYB83              <---------ARR14(2)                        --------->TOE1(3) -->MYB46(1)        --------->TOE2(1)                         <---------ARR11(3) --->AtMYB61        --------->TOE1(1)                         --------->ARR11(3) ----MYB111(2)     ------>ZmHOX2a(1)                         <---------GLK1(1) --->MYB46(3)      <---------LBD16            --------->YAB1 --------->GLK1(1) ----MYB111(1)     --------->LBD16           <---------ATHB12--------->RVE1(1) ----MYB55(2)      =============HOX2a_HOX2a  <---------YAB1 <---------ARR11(3) ----MYB46(2)  --------->AtMYB61 --------->ANAC58           --------->ARR14(2) -->ANAC46  <---------ALFIN1 ----------->RAV1(1)  --------->ANAC46------>ZmHOX2a(1) >AtMYB61----------->HVH21--------->ANAC58 ------>ZmHOX2a(1)--------->ARR11(3)       <---------At4g35610   aacttcttcggctcacacctcctcggatccgccacaagcagagtcctatcatacctcaccaagatatccttaatctccttcttcgactgctcatccacat  6090400                                                                                    <------ZmHOX2a(2)                                                                                 --------------->ANT                                                                                --------->ANAC58                                                                                --------->ANAC58                                                                                --------->ANAC55(1)                                                                                --------->ANAC46                                                                                <---------ANAC55(2)                                                                                --------->ANAC55(2)                                                                           --------->WRKY38(1)                                                                           ----------->HVH21                                                                           --------->WRKY12             ----------->RAV1(1)                                          --------->DOF5.7(2)          --------->ANAC55(2)                                             <---------MYB52(1)          --------->ANAC58                                           --------->AtMYB61          <---------ANAC55(2)                       --------->TOE2(2)--------->DEAR3(1)          --------->ANAC46                          --------->TOE1(2)<---------ALFIN1------>ZmHOX2a(2)          --------->ANAC58                         ----------->RAV1(2)   <-------GAMYB         <---------ZAT18                     <---------ANAC58       <---------MYB55(2)         --------->ZAT18              <---------ANAC46            --------->AtMYB61<---------GLK1(2)       <---------SPL7              ----------->HVH21<---------LBD16 --------->MYB46(3) ------>ZmHOX2a(1)     <---------------AtSPL3  --------->ARR14(2) <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <---------ARR14(2)    <---------MYB52(1)    <---------HSFB2a(2)<---------ANAC58    --------->MYB46(3)--------->ARR14(2)  --------->HSFB2a(2)     --------->HSFB2a(2)<---------ANAC46 ----------->HVH21<---------LBD16  <---------HSFB2a(2)<---------HSFB2a(1)  <---------DEAR3(1)--------->ALFIN1 <---------REM1(2)  -----   acttctggtagtacgcaacaagagccttcgcgatactctgacggatggcgtaaacctgggatgtgtgaccaccaccgttgacacggatcctcatgttcac  6090500                                                        <---------GLK1(1)                                                        <------ZmHOX2a(2)                                                        --------->GLK1(1)                                                       --------->GLK1(2)                                                       <-----------ARR10                                                       --------->ARR11(3)                                          ===================HOX2a_HOX2a                                         <------ZmHOX2a(2)                                         ====================HOX2a_HOX2a                                        <---------ARR11(3)                                        --------->ARR14(3)                           --------->ARR14(2)          <---------ARR14(2)                           <---------ARR14(2)          <---------ARR11(3)                      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)------>ZmHOX2a(2)                     ============================HOX2a_HOX2a                     ===========================HOX2a_HOX2a                     <------ZmHOX2a(1)  <---------ARR14(3)                  <---------HSFB2a(2)   <---------AGP1 --------->ARR14(2)                  --------->LBD16       --------->ARR11(3)                  <---------LBD16       <---------ARR14(2)                               --------->WRKY38(1)             <----------DOF2            --------->ARR14(2)          ---------->DOF2      --------->WRKY12            <---------ANAC58          ----------->ARR10<---------AGP1                   <---------MYB52(1)           --------->ABI4(2) --------->DEAR3(2)       <------ZmHOX2a(1)    --------->ATHB12     --------->MYB52(1)  ----------->ARR10------>ZmHOX2a(2)<-----------RAV1(2)       --------->MYB46(3) ---->ANAC46<---------ANAC58--------->MYB52(1)      <---------TOE1(2)--------->DAG2  <------------AtMYB77   accagcgaaacggtgctttccgaggagaagaaccggctcgaagatcttgaatcggaggatctcaggctggaaaagctcgattgggcaaccgttgagcttg  6090600            --------->ANAC46            --------->ANAC58        --------->ZAT14                             <--------P            --------->ANAC58        <---------ZAT14                        --------->At4g35610          <---------ALFIN1          <---------ZAT18                        <---------At4g35610      <        --------->CCA1(2)       <---------ALFIN1                     <-------TEIL                   =        <------ZmHOX2a(2)    ------>NtERF2                         <---------ARR14(2)              ==       <---------ARR14(2)   <---------RAP2.6(2)                    <---------GLK1(2)               <-       --------->ARR14(2)   <---------ANAC46                       --------->ARR14(2)      --------->ICU4       <-----------ARR10   --------->RAP2.6(3)               --------->ZAT14   <-------GAMYB     <---       <---------ARR11(3) --------->MYB52(1)                 <---------ZAT14  <---------MYB46(3) <---       --------->AGP1    ----------->HVH21           --------->LBD16--------->GLK1(2)   <------NtERF2   atcaaaccagatccacgcttgcagtgagtgacggccactgcggtcttcttccttccgaagcattgcacagattcagtagctggttgagtcgccatggtta  6090700                              ------>NtERF2                              <---------At4g35610                        ----------->RAV1(2)                      <---------TGA1a                        <------MYB46(1)                      --------->TGA1a                        <---------At4g35610           <----------DOF2    --------->At4g35610            --------->At4g35610           =====================bZIP_DOF                     <------MYB83          <---------ANAC58   --------->RAP2.6(2)        --------->ALFIN1 --------P<---------ANAC58 <---------At4g35610  --------->ZAT18 ===============================MYC_MYB      ------>MYB83   <---------DEAR3(1) ===============================MYC_MYB      ------>MYB46(1)*TSS  ---------->DOF2 ------GAMYB          ==================================bZIP_DOF<-------TEIL ------TOE1(3) <---------At4g35610           ---------->DOF2<---------AtMYB61 ------TOE2(3) --------->At4g35610         <---------MYB59  --------->ALFIN1       <----------DOF2   gggttgctccttgctttagctctctcgtctgccgctaaaatgaaacctaatgcacagagtgggaggtgcaaagcgaaatatagggctttatattaagcga  6090800                                                                                     <-----------TGA1                                                                                     <-----------HVH21                                                                                    --------->ANAC58                                                                   --------->YAB1   --------->ANAC46                                                              --------->AHL20(2)    --------->TGA1a                                                              <---------AHL20(2)    --------->ANAC55(1)                                                              --------->AHL20(1)    --------->ANAC58                                     <-----------GT1     --------->AHL20(1)         --------->bZIP60(2)                                 --------->YAB1          --------->AHL20(2)         <---------TGA1a                          <------NtERF2                  <---------AHL20(2)         --------->O2                      --------->ANAC58              --------->AHL20(2)     ------------>CBF                      --------->ANAC46              <---------AHL20(2)--------->AHL20(2)                      --------->ANAC58         --------->AHL20(2)--------->AHL20(2)<-----------STF1             ------>ZmHOX2a(1) --------->AHL20(2)   --------->AHL20(1)--------->YAB1<---------O2   tataactagggcatcctctctaatacgcagcgttttaataaactgttcaaaaaataaaataaaataaaataataaaaatcaattccacgtcactagttac  6090900                                                                             <---------LBD16                                                                            --------->LBD16                                                                            ------>NtERF2                      --------->YAB1                                       <---------RAP2.3(2)                   --------->WOX13(1)                                      <---------RAP2.6(2)                 ------------>CBF                                          <---------LBD16        ---                 --------->WRKY18(1)                              ---------->ID1      <----------DOF2              <---------TOE1(3)                      ----------->GT1 <---------MYB52(1)        <-----              <---------TOE2(3)            --------->LBD16    ------>ZmHOX2a(1) <------NtERF2 -------     <---------CCA1(2)--------->TOE2(3)  <---------LBD16<-----------GT1   <---------LBD16     <------   tactatcgtctcttctaaggtcaatcttatcggagagatttattccggtgagaaaatgttactccttcgtcgttattccggcggaagtctttactcgatc  6091000     --------->YAB1   <-----------HVH21                                                               --------->DAG2  -- --->ZmHOX2a(1)                                                                   ---------->DOF2  -- -ZmHOX2a(2)                              ------->GAMYB   ---------->DOF2        ---------->DOF2  --- -->ARR14(2)           <-----------GT1   --------->MYB46(3)                      --------->MYB52(1)<- ---ARR14(2)        ------->TEIL        <---------At4g35610      <---------YAB1<---------MYB52(2)<---   ctccctatcagagcctctattgaatctactattcgtcatttcaacagcctcgagcctttgcaaagctctgattcgactccaactaaaggcgattacttcg  6091100                                   --------->ARR14(2)                              <------NtERF2           <-------MYC3       --------->LBD16           ------->MYC3       ------>NtERF2           --------------------->WRI1        <---------ALFIN1     --------->DEAR3(1)        ------->GAMYB      <------NtERF2       --------->MYB46(3)  <---------ATERF1(1)                                               <-------      -------->P           --------->At4g35610                                          <---------ANAC58     --------->WOX13(1)    <---------At4g35610     --------->ATHB12                     <---------ANAC46   <------ZmHOX2a(2)       ------>NtERF2          <------ZmHOX2a(2)                     <---------ANAC58 ------->LBD16            --------->ANAC46        <---------YAB1               --------->TOE2(2) ---->NtERF2             --------->SPL7          <---------ARR11(3)            --------->TOE1(2) ------>DEAR3(1)       <---------SPL7<-------TEIL--------->ARR11(3)           --------->MYB46(3) -----NtERF2        <---------ARR11(3)     --------->LBD16            -------->P     --------->ARR14(2) ------LBD16        --------->ARR11(3)   <---------LBD16            <---------ETT(2) <---------ARR14(2)   ccgcgatcaaccacgttgtcaatatcgtccgccgcgagattcacccggagagatcattgaacagtctccgtctacctgtaacctccgaattcgtgttcag  6091200                                                                                 ------->GAMYB                                                                                 --------->TOE2(3)                                                                                --------->MYB46(3)                                                                                <---------MYB55(2)                                                                               ------>MYB83                                                                               -------->P                                                                               ------>MYB46(1)                                                                              --------->MYB55(1)                                                                             --------->AtMYB61                                                                             <---------MYB46(2)      --------->ANAC46                                                       <---------MYB111(1)      --------->ANAC58                                                       <---------MYB111(2)      --------->ANAC58                                                       --------->MYB46(3)     ------>NtERF2                                                           --------->DEAR3(1)     <---------LBD16                    --------->ARR14(2)                --------->ANAC46     --------->LBD16          --------->GLK1(2)                           --------->ANAC58          <   <---------LBD16           <---------GLK1(2)                            --------->ANAC58          <  ------>ZmHOX2a(1)        <---------ATHB12                             <---------ALFIN1          <-- --ZAT14              ------>ZmHOX2a(1)<---------GLK1(2)            --------->STY1(2)             ---   agtcctccgcgcaacttctcgttcctccaacgattctctccgattcttcaattgggctcgatcgaaccctagctacacaccaacctccatggaatatgaa  6091300  Previous    Next  AGI:  At5g18380.1    Description:  40S ribosomal protein S16 (RPS16C). Identical to 40S ribosomal protein S16-3 (RPS16C) [Arabidopsis Thaliana] (GB:Q42340); similar to 40S ribosomal protein S16 (RPS16A) [Arabidopsis thaliana] (TAIR:AT2G09990.1); similar to 40S ribosomal protein S16 [Euphorbia esula] (GB:AAF34799.1); contains InterPro domain Ribosomal protein S9; (InterPro:IPR000754); contains InterPro domain Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721) Range:  from: 6090051    to: 6090760    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g18390.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G65820.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO38783.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 6090956    to: 6092547    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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