Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                             --------->CCA1(2)                                                  <------     <-------TEIL<---------ALFIN1                                                             <------ <-------TEIL   --------->MYB46(3)       ---------->DOF2        ----------->GT1               ------- ------->TEIL  <---------At4g35610 <----------DOF2          ---------->DOF2                   ------- ------------AtSPL3       --------->ARR11(3)       --------->ANAC58              <---------AHL20(2) ------------AtSPL8      <------ZmHOX2a(1)         --------->ANAC58     --------->YAB1       <-------   atgtacgttcatgcttcagccactctaggatatagctcttttcaaaagtctgaacgaaaaacaaaagagtaaaatcagcatatataaaaaccagagaatc  6069600                                                                            ------>ZmHOX2a(2)                                                                          ------->TEIL                                                                          --------->ARR11(3)                                                                          <---------AGP1                                                                          --------->ARR14(2)         ------>ZmHOX2a(2)                                                <---------ARR14(2)        <------ZmHOX2a(2)                                          <---------AHL20(2)       --------->ARR14(2)                                        <---------AHL20(2)       <---------ARR14(2)                                        --------->AHL20(2)  <---------ANAC58                                              <-----------------AGL3  <---------ANAC58                                           --------->AHL20(2)  <---------ANAC46                                           <---------AHL20(2) ---ARR14(2)                                               --------->AHL20(2)<----------DOF2 -----ARR10           <---------ARR14(2)               --------->YAB1     <---------ARR11(3) -->ARR14(2)          --------->ARR14(2)      --------->ANAC58  ===================================== -->GLK1(2)------>ZmHOX2a(1)                  --------->ANAC58 <---------AHL20(2)      <----------DOF2 --GLK1(2)<---------MYB59  <---------AtLEC2   --------->ANAC46 --------->AHL20(2)<----------DOF2    <   tgtgtcttggatcctaactatctgtatttgcataacacataaatgaacacaccagaatcatatatatatatatatggatctttctttttctttgatactg  6069700             <----------DOF2             <---------DAG2   --------->AHL20(2) --------->TOE2(3) --------->TOE1(3)                                            --------->YAB1 <---------------AGL15                                     --------->YAB1 <----------DOF2                                         --------->ANAC58 --------------->AGL15                                   --------->ANAC58   ----------->RAV1(2) ================MADS_MADS      <---------AHL20(2)   --------->ANAC58  <------ZmHOX2a(2) -----------------AGL3         --------->AHL20(2)    --------->ANAC58 <---------ARR11(3)   aaactttaaatggaactttatatgctcatacgaataaatggaatatcgaaaactgaagcaagaatcacaagagatcaaacctggccagaagcgatgagca  6069800                                                                            <---------ARR14(2)                                                                            --------->ARR14(2)                                                                            <---------GLK1(2)                                                                          --------->LBD16                                                                         <---------ANAC55(2)                                                                         --------->ANAC55(2)                          --------->ZAT14                                <---------ANAC46                          <---------ZAT18                             <---------ARR14(2)                          <---------ZAT14                             --------->GLK1(2)                    --------->HSFB2a(2)                               --------->ARR14(2)             ------>ZmHOX2a(2)                               --------->CCA1(2)           --------->ARR11(3)              --------->HSFB2a(2)       --------->ARR14(2)           <---------ARR11(3)      <-----------GT1          <---------ARR11(3)<---------HSFB2a(1)         <---------YAB1   --------->ZAT18  <---------HSFB2a(2)       <---------GLK1(2)       <---------ICU4   <---------------AtSPL3              --------->ARR11(3)<---------HSFC1(2)       --------->YAB1   <---------------AtSPL8        <---------LBD16<---------ARR14(2)         -----      <------ZmHOX2a(2) --------------->AtSPL8      <---------ALFIN1--------->At4g35610        ------  <-------TEIL      <---------HSFB2a(2) <----------DOF2 --------->LBD16 <---------LBD16     <--------   taggttcgatcatgatcttgttcgagagtgtacatataaactcttttggaacttccaccggagatatatcagattccggattcttcgattctattttcct  6069900                                                                      ------>NtERF2                                                                <---------ARR14(2)                                                                <-----------ARR10                                                                --------->ARR14(2)                                                      <-----------HVH21                      --------                                                   ------>ZmHOX2a(1)<---------LBD16         ---------          <---------ARR14(2)              <----------DOF2      ------>MYB83                 ------>NtERF2          <---------GLK1(2)              <---------ICU4        ------>MYB46(1)<---------ANAC58          --------->ARR14(2)             =================HOX2a_HOX2a --------->LBD16      --------->ANAC58   --------->ANAC58                      ------>ZmHOX2a(2)     <---------CCA1(2)           --------->ANAC58   --------->ANAC58                     <---------YAB1--------->LBD16--------->ANAC46      --------->ANAC46 ->ZmHOX2a(1)                          <---------ARR11(3)  --------->SPL7     <---------ANAC46<------ --->TOE2(3)  <---------YAB1           --------->ARR11(3)<---------SPL7<---------MYB52(1) <---------LBD16 ---GT1  <------ZmHOX2a(1) --------->WOX13(1)   ------>NtERF2<---------MYB59  <---------ANAC58-------   cagacaagtcaggattctaatagcctcatcaatctcacagtgatctttgcctcctccgtcgtaccaaatctccggcagtaccttgtgtaactcccgccac  6070000                                --------->ARR14(2)                                ------->TEIL                            <------NtERF2                           ------>NtERF2                          --------->DEAR3(1)                          --------->RAP2.3(2)                          --------->RAP2.3(3)                         --------->RAP2.3(1)                        ------>NtERF2                        <---------At4g35610                        <---------ATERF1(1)                        --------->At4g35610                        <------NtERF2           --------->LBD16            <-------GAMYB--------->ATERF1(1)  <---------LBD16       ---------->DOF2           <---------MYB46(3)   --------->GLK1(2)<------NtERF2 ----------->RAV1(1)  <---------ARR14(2)  --------->SPL7         <---------At4g35610------>MYB46(1)  --------->ARR14(2)<-----------HVH21    <-----------HVH21    --------->AtMYB61 --->HVH21 --------->MYB52(2)   <---------ARR14(2)           --------->MYB46(3) >LBD16  <---------MYB52(1)<-----------HVH21 --------->At4g35610------>MYB83 ---ALFIN1 --------->MYB55(2)   <---------ARR11(1)   --------->GLK1(1)                           ---- ---->RAV1(1) --------->WRKY38(1)--------->HSFB2a(1) <---------GLK1(1)           ---------->DOF2-----   agagtatcagcgtttgttgactcgtccgccgtcgaatctgccatttcagccggagatttctctaccaacacaaagaacccaaacaaagaactgaaaaccc  6070100                                                         --------->GLK1(2)                                                      --------->ANAC58      ----------->GT1                                 --------->ANAC58 ----->LBD16         ---------->DOF2             --------->ANAC58                   <---------AHL20(2) ---->LBD16     <------ZmHOX2a(1)                --------->ANAC58       --------->CCA1(2)  ------>ZmHOX2a(1)   gagaaacttggtgaattaggagggaaagttttctgtttggaatgtagagagaagccaagaaactgttttatatgatatgagtttgttttattcctctgtt  6070200                                     <---------ARR14(2)                                     --------->ARR14(2)                           <------MYB83                    <----------DOF2 --------->HSFB2a(1)                --------->ANAC58    --------->HSFC1(2)                --------->ANAC46    <---------HSFC1(2)         --------->ANAC55(2)   --------->HSFB2a(2)         <---------ANAC58  <------MYB46(1)                                                     ------         <---------ANAC58<---------WOX13(1)         --------->YAB1                         --------->ZAT14         <---------ANAC55(2)   <---------HSFB2a(2)  --------->AHL20(2)                     ----------       <-----------GT1  <------------CBF        <---------AHL20(2)                      <---------ANAC46   --------->AHL20(2)  --------->ATHB12  ----------->GT1                             --------->GLK1(2)   <---------AHL20(2) <---------YAB1<---------HSFB2a(1)                        --------->AHL20(2) <----------DOF2--------->ANAC58----------->GT1--------->AHL20(2)          <---------YAB1  <---------ZAT14   tctctttaattacgttacacgactttgattggtctggaaaattcggtgatttaataaaaattcttaagctatatgctctgattaaaaattctgtgcaatg  6070300                            <--------P                           <-------GAMYB                          <---------MYB46(3)                          --------->MYB52(2)                          <------MYB83                          --------->MYB55(2)                          <------MYB46(1)                         <---------MYB46(3)                        <---------MYB55(1)                        <--------P                      <---------MYB46(3)                   ------------>AtMYB77           <---------AHL20(2)       --------->ICU4           --------->AHL20(2)       <---------YAB1      --------->AHL20(2)<---------MYB52(1)  <---------AHL20(2) <-----------TBP   --------->MYB52(1)  <---------YAB1                                          <----- --->ICU4  --------->AHL20(1)--------------->AtSPL8    ----------->GT1          <---------AHL20(2) -->CBF<---------AHL20(2)<---------AtMYB61<---------YAB1                        --------->AHL20(2)  <   tttttttataaaattttttatcaacggttggttagtacatgattattttttgatataatgtaaacaagagaagttgaagtattttaatcttgagtatttt  6070400                                                             --------->MYB46(3)                                                          --------->REM1(1)    --------->DAG2                                        --------->MYB46(3)   ---------->DOF2                                      ----------->RAV1(1) ----AHL20(2) --------->ANAC46 --------->MYB46(3)---------->DOF2                     <---------GLK1(2) ---------ANAC46       --------->ANAC46    ----------------->AGL3            --------->ANAC46  <-----   tttcgtaaagtatttcaagcgatataaacaacaacaatcccttgcaccaaaaaaagagcaacaacaatccctagattacaagtctcaaattcttctactt  6070500  Previous    Next  AGI:  At5g18330.1    Description:  U-box domain-containing protein. similar to armadillo/beta-catenin repeat family protein / U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G18320.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO38793.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain U box; (InterPro:IPR003613) Range:  from: 6068476    to: 6070044    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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