Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           <-----------HVH21     <---------ALFIN1   --------->LBD16                                                --------->ANAC58  --------->ATERF1(2)                                             --------->ANAC58  <---------ATERF1(2)                                         --------->AtMYB61 <---------LBD16 <---------ZAT18                            ----------->RAV1(1) <-----------------AGL1--------->REM1(1)--------->ZAT14     ------>NtERF2 --------->DEAR3(2)  <----------DOF2    --------->At4g35610--------->RAP2.6(2) ------>TEIL   <---------ZAT2        <---------ZAT2       --------->MYB46(3) -------ZAT14  <---------At4g35610   <---------At4g35610 --------->At4g35610        ---------->DOF2 -------SPL7   --------->ZAT2        --------->At4g35610 <---------At4g35610<------ZmHOX2a(1) ------>ZAT14  --------->At4g35610   --------->ZAT2     --------->ANAC46---------->DOF2           ---   tgtaccggcactggcacagctcgcttcatcttcataccgagctgcagtccattcgtctcagccaccacaagcacaaaaggataacaaaatgcagaagtct  6035200                           <---------ZAT14                           --------->ZAT14                         --------->ANAC46                                                 ---------->DOF2                       --------->ANAC46      ---------->ID1                      <----------DOF2                <----------ID1  --------->ZAT2       <---------AHL20(2)       --------->ARR11(3)                --------->ANAC58<---------ZAT2  <---------YAB1                <-----------ARR10    <-                --------->ANAC46<---------At4g35610  --------->AHL20(2)       <---------ARR11(1)  ---        <----------DOF2<---------ALFIN1 <----------DOF2 <-----------GT1      <---------CCA1(2)    <-- ------>ANAC46  --------->ANAC58--------->At4g35610 <---------AHL20(2)<---------AtLEC2<----------DOF2   acgacttctcctttgtaaacgacacacacagcacagctctctcttttgttcttatttatttctcttcattttgtatgtcaaatcttttctttgaaagaga  6035300                                                                   <---------ANAC55(2)                                                                   --------->ANAC55(2)                                                                  <---------LBD16                                                               <-----------HVH21                                                              ----------->HVH21                                                             --------->LBD16                                                            <---------ANAC55(1)                                                            <---------ANAC58        <---------ANAC46                                    <---------ANAC58    <---------AtLEC2        ----------->GT1                              --------->TOE2(3)  <----------DOF2 <----------DOF2                                     --------->TOE1(3)  <---------DAG2 --------At4g35610                               ---------->DOF2----------->HVH21              <----- ------>ARR11(3)                             ---------->DOF2<---------ANAC55(2)<-------TEIL  -------- -------ARR11(3)     <---------CCA1(2)<-----------RAV1(1)   --------->ANAC55(2)------->TEIL <--------   gagcttcttggtgtaaattcttcttatcttatacaactatctggtgctaaagaaagcttaatccgtgtcacgggctttatgtacatggatgccaatggtg  6035400                                                                      --------------------->WRI1                                                                      <----------DOF2                                                                  --------->GLK1(1)                                                                <---------ANAC58                                                           <-----------RAV1(1)                                                           --------->ALFIN1                                                         --------->At4g35610                                                         --------->ZAT2                                                        --------->GLK1(2)                                                      <---------At4g35610   <---------AHL20(2)   <---------ATHB12                           ---------->ID1 --------->ALFIN1 ----YAB1                         --------->ICU4    <---------HSFB2a(2)    --------->YAB1 ->YAB1                      <---------YAB1 <-----------RAV1(1) <---------ANAC58 -ATHB12            <---------ZAT14<------ZmHOX2a(1)--------->HSFB2a(2)   <---------YAB1           <-   attcactcattctcatatagactatagagtgatgaaaggattagttttgttgtttcagaagctgtggggtttctttataatattcgaacaattttggctc  6035500                                                                                                  ---                                                                                                -----                                                                                                <----                                                                                              ------>MYB46(1)                                                                                              ------>MYB83                                                                                            ------->GAMYB                                                                                           --------->MYB46(3)                                                                                          --------->ANAC58         <---------AHL20(2)                                                               -------->P<         --------->AHL20(2)                                                               --------->ANAC58    <---------MYB52(1)  --------->ICU4                   <---------TOE1(3)            --------->ANAC58  ----------->GT1   --------->At5g28300                  <---------TOE2(3)            --------->ANAC58 --------MYB52(1)  ----------->GT1              ----------->GT1              ----------->TBP---------   tgtttcgttatatatatacgagggtaattttggaatttcaagatgagatttagtgaattagggtttttgaccaaaggctataaaactcgagcaaccaaat  6035600                                                                   <---------DAG2    <---------ARR14(2)                                             <----------DOF2    --------->ARR14(2)                                            ----------------->AGL1    --------->ARR11(3)                                           ---------->ID1                <-----    <---------ARR11(3)              <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                        -------   <---------CCA1(2)            --------->ZAT2        <---------MYB52(1)<---------ANAC58      <------ --------->YAB1                 <---------ZAT2 <----------DOF2   ------>NtERF2                ------- ------>WOX13(1)                --------->At4g35610<---------TOE1(3)    <---------ANAC58      <------ ------->CBF              *TSS  <---------At4g35610<---------TOE2(3)<----------DOF2     ------->GAMYB -----ATHB12           ------>ZmHOX2a(2)  ----------->GT1      <---------RAP2.6(2)      --------->TOE2(3) ---------ATHB12     --------->ARR11(3)  --------->DAG2  <---------TOE1(3)            -------->P >AtMYB61            <---------ARR11(3) ---------->DOF2  <---------TOE2(3)      <---------ATHB12   caatcaaatcttcaaaactacttgatcttatctgagctgagaaaaagtgatttatcgttagggtttcggccttttcgggccaatgagcaaccccaatatc  6035700               ----------->TGA1               ----------->HVH21           <------NtERF2           <---------LBD16           <-----------RAV1(2)          ------>NtERF2         --------->ARR14(2)        <---------ZAT2        <---------At4g35610        --------->At4g35610        <---------ABI4(2)        --------->ATERF1(1)        --------->RAP2.3(1)        <------NtERF2       <<<<<<<<<AtERF-5       <<<<<<<<<AtERF-3       <<<<<<<<<AtERF-2       <<<<<<<<<AtERF-7       <<<<<<<<<AtERF-1       <<<<<<<<<AtERF-4       <---------ORA47(2)       <---------RAP2.3(1)       <---------RRTF1(1)       <---------ATERF1(1)       <---------ERF1       ------>NtERF2       <---------DEAR3(2)      <---------ATERF1(2)      <---------RAP2.3(2)      <---------ANAC58      <---------DEAR3(1)      <---------ANAC58      <---------RAP2.3(3)      <---------RRTF1(2)                                                                   <---------ZAT14      <---------RAP2.6(2)                                                                  <---------SPL7      --------->ATERF1(2)                                                                  <---------ZAT18     --------->ATERF1(1)                                                                   --------->ZAT18     <------NtERF2                                                                       --------->At4g35610     --------->RAP2.6(3)                                                                 <---------At4g35610    <---------ATERF1(1)--------->DAG2                 --------------------->WRI1    ----------->RAV1(2)   <---------DEAR3(1)---------->DOF2        <---------MYB52(1)                     ------>NtERF2  <---------ANAC58<---------ANAC55(2)       --------->DOF5.7(2)                 <---------At4g35610  <---------ANAC58<---------ANAC46         --------->TOE1(3)                    <---------ZAT2 ----YAB1<---------ARR14(2)                --------->TOE2(3)                    --------->ZAT2 -->ARR14(2)  <-----------HVH21           ----------->GT1                       --------->At4g35610 ---ARR14(2) --------->At4g35610         <---------TOE2(3)                   <---------ANAC58       < -->ARR11(3) --------->LBD16             <---------TOE1(3)        xxxxxxxxxxxxxxxx>smallRNA(s)------- ---ARR11(3) <---------At4g35610    <----------DOF2>>>>>>>>>>>>>>>>>LFY      <---------ANAC58 -------   cttggctggcggctccggtgacggaaaggtttcgattccttttatcgttaatttcccattgttttcagcgatgaagactgcttgctgcctgagcgcacga  6035800                                                ------>MYB46(1)                                              ------->GAMYB                                             --------->MYB46(3)                                            --------->ANAC58                                            ------>MYB46(1)                                            ------>MYB83                                            --------->ANAC58                                           ------>MYB83                                           ------>MYB46(1)                                         <---------MYB111(1)                                         --------->MYB46(3)                                         <---------MYB55(2)                                        --------->ANAC58                                       ------>MYB46(1)                                       ------>MYB83                                      <---------ALFIN1                                     --------->DEAR3(1)            ----------->HVH21        --------->MYB46(3)           <-----------HVH21         <---------MYB111(2)         <------NtERF2               <---------MYB55(2)         xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        ------>NtERF2               --------->ANAC58       <---------DEAR3(1)           --------->ANAC58                                      <---------TOE1(3)      <------NtERF2                 --------->ANAC46                                      <---------TOE2(3)    --------->ANAC46               ------->GAMYB------>MYB83                        --------->AHL20(2)    <---------DEAR3(1)  <---------ANAC58--------->ANAC58                           <---------YAB1 -----------GT1         <---------ANAC58--------->ANAC46                        <---------YAB1 -->ANAC58xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->AHL20(2)        <---------GLK1(2) -->ANAC58<----------DOF2    <----------DOF2-------->P                      --------->ARR11(3)    <<<   ttttactcggcgctgtgatggctattgcgagctttaacacccacccaaccaaatatttatgtgtttttgaaaattttagattttgattatttaaggtttc  6035900                                                     <XXXXXXXXXXXXXXXXXXXXMIR415                                                  <<<<<<<<<MYB2               --------------------->WRI1<---------YAB1       <----------DOF2                   <---------TOE1(3)       <---------DAG2                    <---------TOE2(3) <<<<<<TBF1 <------------------------ANAC81    <---------AtMYB61         ---------->ID1       -------   ttcttctagctttttgtttttgttcgattcgaatttgtggattatggttttggttttctgtttttgttttgttttgttcttatcaactagaagaaaactt  6036000                                                                                         --------->SPL7                                                                                       --------->ZAT18                                                                                      <---------ANAC55(2)            <---------ANAC58                                                          --------->ANAC55(2)   <---------ANAC46                                                                   <---------ANAC58 <---------ANAC46                                          --------->ARR11(3)         <---------ANAC58 <---------ANAC58                              <---------ANAC46                      --------------->AtSPL8 <---------ANAC58      ------>ZmHOX2a(1)<----------DOF2    <---------ARR11(3)        <---------------AtSPL3 -->TOE2(3) <---------ANAC58         --------->GLK1(2)     <---------GLK1(2)         --------------->AtSPL3   aattcgtgtgtaaggcttgttgttcctagttaactagagtttctttgtagcctgaaatatagattttggattacaagttaactaaaatgcgtactgcttc  6036100  Previous    Next  AGI:  At5g18250.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G04040.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23501.1) Range:  from: 6033704    to: 6035382    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g18255.1    Description:  other RNA Range:  from: 6035626    to: 6037605    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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