Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100               --------->ALFIN1                                 <---------GLK1(1)     --------->DAG2         <-------TEIL                                         --------->At4g35610  ---------->DOF2        <--------P                                          <---------GLK1(2) ----------->GT1      <------MYB83                             --------->ARR11(3)        --------->ANAC58      <------MYB46(1)            --------->GLK1(1)       --------->ANAC46--------->ANAC58   tgttttgtaggtagattggggcattgaaatgtgggattttcacattggagagcttgaacacagcatctccctcacaagcatggagaaaagttgcaacttc  6009200                                                                  <-----------GT1              ---------->DOF2                                    --------->AHL20(2)            --------->ANAC58                             <----------DOF2                   ----------            --------->ANAC58  --------->MYB52(1)     ---------->ID1                    --------->GLK1(2)       --------->AtMYB61   --------->YAB1          <---------MYB46(3)               --------->ANAC58    --------->ZAT6        <---------YAB1          --------------->AtSPL8      <-----------HVH21  <---  <-----------GT1 <---------GLK1(2)        <-----------GT1    --------->WOX13(1)    --------->ANAC58   tgtataacaccaccaagaaagaaactctatcataacagagacaattcacaagtttgttccttttcaattaacttcaaaactgtcacaagaatccaacaaa  6009300                                                                           <---------YAB1                                                                   --------->MYB52(1)          <-----                                                                  ------->GAMYB                <-----                          <---------ATHB12                       <---------MYB52(2)     ----------->HVH21                     --------->TOE2(3)                           <---------MYB55(2)   <---------At4g35610 --------------->AGL15  --------->WOX13(1)                       --------->MYB46(3)   --------->ZAT2 <---------------AGL15<---------YAB1                           ----------->RAV1(1)    --------->At4g35610 ------>ZmHOX2a(1)  --------->YAB1                           <---------At4g35610      <---------ZAT2 ->RAV1(1)<------ZmHOX2a(1)--------->YAB1    <----------DOF2 --------->At4g35610   ---------->DOF2 ------ARR11(3)    <---------ATHB12       <-----------GT1   --------->ANAC46    <-----------HVH21   atcctaataacaggaaaacaaatcatcaatcagaatacaaaaattttctttttgtcaaatttcagcaacaaacgctcattaatgtcaaagctgacaactt  6009400                  <---------WOX13(1)                  <----------DOF2                                        <---------ZAT14        <---------ICU4                                              --------->MYB46(3)       --------->ICU4                                              ------>MYB46(1)     --------->YAB1                                                ------>MYB83     <---------AHL20(1)                             <-------GAMYB--------->TOE2(2)             <-----     <--------ATHB1                                ----------->GT1--------->MYB52(1)           ------     <---------ICU4     <------MYB46(1)   <-----------HVH21      --------->TOE1(2)             <-----     --------->ATHB51   ----------->GT1<---------ARR14(2)       <---------MYB52(2)            <------     --------->AHL20(2) <------MYB83   --------->ARR14(2)       --------->DEAR3(2)          ---------    <---------ATHB51  <---------WOX13(1)  --------->TOE2(3)     --------->MYB46(3)        <----------    <---------ATHB12--------->ATHB12   --------->GLK1(2)        <---------MYB55(2)     ------>ZmHOX2a(1) ----DAG2    <---------At4g35610      <---------GLK1(2)        ------->TEIL       <------MYB46(1) <-- -----DOF2  <-----------GT1  --------->ICU4  ---------->DOF2<---------MYB52(2)    <------MYB83-------   ttttcaataatttttatctgcttgattggtaagaatgagagaatcgtcaaagagggttgaaaacgaaccaacgacttcgctgggaggtccttcgtcataa  6009500                                                                                            ---------                                                                                           ------->MYC4                                                                                           <-------PIF5                                                                                           ------->PIF5                                                                                           <-------MYC4                                                                                           ------->MYC2                                                                                           ------->MYC3                                                                                          --------->TGA1a                                                                                          ===========                                                                                          <---------PIF3(3)                                                                                          <---------ANAC46                                                                                          --------->O2                                                                                          --------->bZIP60(2)                                                                                          <---------TGA1a                                                                                        <---------ALFIN1                                                                                       <------NtERF2                                                                                       ----------->HVH21                                                                                      --------->ABI4(1)                                                                                      <-----------HVH21                                                                                      ------>NtERF2                                                                                     <---------ATERF1(2)                                                                                     --------->RAP2.3(2)                                                                                     --------->DREB2C(2)                                                                                     --------->RAP2.3(3)                                                                                     --------->ANAC58                                                                                     --------->RRTF1(2)                                                                                     --------->DEAR3(1)                                                                                     --------->RRTF1(3)                                                                                     --------->ANAC46                                                                                     --------->RAP2.6(2)                                                                                     --------->ATERF1(2)                                                                                     --------->ANAC58                                                                                    --------->ERF1                                                                                    --------->ATERF1(1)                                                                                    --------->ORA47(2)                                                                                    --------->RAP2.6(1)                                                                                    --------->RRTF1(1)                                                                                    --------->RAP2.3(1)                                                                                    <------NtERF2                                                                                    --------->DEAR4(2)                                                                                   <---------RAP2.3(1)                                                                                   ------>NtERF2                                                                                   --------->ABI4(1)                                                                                   <---------DREB2C(1)                                                                                   --------->At4g35610                                                                                   --------->DREB2C(1)                                                   --------->DOF5.7(2)             <---------At4g35610                                               <------NtERF2                       <---------ATERF1(1)                                               ------>NtERF2                      --------->RAP2.6(2)                                           ------->PIF5                           --------->RAP2.3(2)                                           <---------SPL7                         <---------ATERF1(2)                                          --------->ANAC58                        --------->DEAR3(1)                                          --------->bZIP60(2)                     --------->ATERF1(2)                                          --------->ANAC46                       --------->ERF1                                          ===========================================bZIP_DOF                                          ================MYC_MYB                --------->ATERF1(1)                                          --------->ANAC58                       --------->RAP2.3(1)                                          <---------TGA1a                       <---------ATERF1(1)                                          --------->TGA1a                       --------->At4g35610    --------->AtMYB61         --------->ANAC46 --------->LBD16               --------->At4g35610    <---------ALFIN1        <---------ALFIN1 --------->SPL7                  <---------At4g35610   --------->MYB46(3)    ------->PIF5<-------PIF5  <---------MYB52(1)        --------->ZAT2<-------MYC2 ---HAHB4             <---------ALFIN1    --------->O2                       <---------ZAT2<-------MYC3 --->ATHB51        <-------PIF5<-------PIF5<-----------HVH21              ==========================bZIP_DOF ----ICU4          ------->PIF5------->PIF5<-------PIF5                   ---------->DOF2------>NtERF2 ---YAB1          --------->ANAC46  --------->ANAC46                     ----------->HVH21<---------O2 >YAB1  ---------->DOF2  <-------PIF5------->PIF5 ==================================================MYC_MYB -TGA1 --------->AtMYB61--------->ANAC46<---------ALFIN1               ----------->RAV1(2)--------->PIF3(3) ---------GT1   <---------ALFIN1  <---------ALFIN1<-------GAMYB        <---------LBD16<---------ATERF1(1) -->ICU4============================================bZIP_DOF  ------>ZmHOX2a(1) ------>NtERF2  <-----   ttaccaccaccaaagcgtccacgtccacgtccacgtccacgtccacgtccgccgttatctcttcctccccttcccctgaagctgccgccgccacgtggtg  6009600                                                                                            ---------                                                                                          <---------ANAC46                                                                                     <------------CBF                                                                                   <---------------AGL15                                                                                  ------------>CBF                                                                                  ----------------->AGL1     <----------DOF2                                <---------AHL20(2)    --------->ANAC58<---------ANAC58 >ALFIN1                                 ------>ZmHOX2a(1)                --------->ANAC58<---------ANAC58 ===============bZIP_DOF            --------->At4g35610   <---------TOE1(3)   <------------CBF ----AtMYB61   <---------AtMYB61    <---------At4g35610   <---------TOE2(3)------------>CBF <--------   gtctcatctttttggttttggtttcttctatcgctctctgctcctcagaggtttttatttagggtttcagcgagggaagcaattgccaattggagtgttg  6009700                                                             <---------At4g35610                                  ---------->DOF2   <---------TOE2(3)                         -------                           ----------->GT1        --------->STY1(1)       --------->LBD16    <-------                         ---------->DOF2          <---------STY1(1)  ----------->HVH21      <-------- >ALFIN1              <----------ID1          --------->MYB46(3)   ----------------->AGL1---------->DOF2 -ZAT6              --------->MYB52(1)  ----------->GT1      ------------>CBF        ----------->GT1-   aagaagtagttgtgactcttaataacgaaaagaaaaaaaagaaggtaaaccactagggttttcagcaatcccagaccgggttacgactcgttaaaccggg  6009800                                                                                       --------->AHL20(2)                                                                                       <---------AHL20(2)                                  <---------YAB1                                      <---------AHL20(2)                                --------->YAB1                                    <---------AHL20(1)                                <---------AHL20(1)                                --------->AHL20(2)                                <--------ATHB1                               <---------YAB1     <---------AHL20(2)         --------->AHL20(2)                        <---------ARR11(3)    --------->AHL20(2)          --------->ATHB51          --------->CCA1(2)  <---------AHL20(2) ----------->GT1               <---------ATHB51          --------->ARR11(1)<---------CCA1(1) -->LBD16                  ------------>CBF--------->ICU4<---------ARR11(3)<---------RVE1(1) --LBD16            <---------AHL20(2)----------->GT1---------->DOF2      --------->ARR11(3) <------- -LBD16      <----------DOF2   <---------ATHB12  <-----------GT1  ------------>CBF<---------AHL20(2) ---------->GT1  ----------->GT1<---------ICU4 --------->AHL20(2)--------->YAB1<---------AHL20(2)  <-   aagagataaaattttcttttagtaaatttgtcaataatttttgtaaaaatttaacaaaagatttgaataacaatgagatattattttatttatttatgct  6009900              <------MYB83              <------MYB46(1)             --------->MYB59                                                                        -     <----------DOF2                                 ---------->DOF2                                <   <---------DEAR3(2) <----------DOF2       <-----------GT1                                        --  <---------DREB2C(2)<---------ANAC58 --------->AHL20(2)                     --------->ANAC58      -- --YAB1  <---------TOE2(3)            <---------AHL20(2)                     --------->ANAC58 ------- ----------RAV1(1)   <---------ANAC58--------->AHL20(2)         ---------->DOF2              --------   tatgtcggtttaagtttggtttggctttctcacatttcatttattttaaacacttgaaagttgaaacaaagactcaaacaaggcaagtgataccaaaaag  6010000  --------->ZAT18  <---------ZAT18 -------->At4g35610 ---------At4g35610 ------->ANAC58 ------->ANAC58                         <---------AHL20(2)                     <----------DOF2   ---- -->DAG2          ---------->DOF2      --------->YAB1                <----------DOF2           <----- -->DOF2    ----------->GT1         <---------------AGL15     <-----------GT1  ------>ZmHOX2a(1) ----   taagcacacttgaaggcttaaaaagccctcaaaactttctattaaaactaattcaacttctctgttaccatcttttctatccttttatacttctacatac  6010100  Previous    Next  AGI:  At5g18180.1    Description:  Gar1 RNA-binding region family protein. Identical to Putative H/ACA ribonucleoprotein complex subunit 1-like protein 2 [Arabidopsis Thaliana] (GB:Q9FK53); similar to Gar1 RNA-binding region family protein [Arabidopsis thaliana] (TAIR:AT3G03920.1); similar to Os11g0579800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068150.1); similar to hypothetical protein OsI_035378 [Oryza sativa (indica cultivar-group)] (GB:EAY81419.1); contains InterPro domain Gar1 protein RNA-binding region; (InterPro:IPR007504); contains InterPro domain HMG-I and HMG-Y, DNA-binding (InterPro:IPR000637) Range:  from: 6008563    to: 6009607    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g18190.1    Description:  protein kinase family protein. similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G25760.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G13670.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G03940.1); similar to hypothetical protein OsJ_003527 [Oryza sativa (japonica cultivar-group)] (GB:EAZ13702.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN59733.1); similar to hypothetical protein OsI_013385 [Oryza sativa (indica cultivar-group)] (GB:EAY92152.1); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein Range:  from: 6009969    to: 6013726    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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