Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                  <----------DOF2                     ------>ZmHOX2a(2)                    <------ZmHOX2a(2)                                                <---------------AGL15                   --------->ARR11(3)                                               <----------------                   <---------ARR14(2)                                    ----------->GT1                   --------->ARR14(2)                                   --------->DAG2                   <---------ARR11(3)                               <---------AHL20(2)                  <---------GLK1(1)                                 --------->AHL20(2)                  --------->GLK1(1)                   <----------DOF2  ---------->DOF2          <----     --------->GLK1(2)      --------->WRKY12  --------->ICU4------>ZmHOX2a(2)       <----------------   atatgaaattctgttcttggagatcccaagttgactttgaagcatgccctaatgagctttgatctcagatttaaaaagtagaattatctaaatttggagg  6002400                                                                                           <---------AHL20(2)                  <---------WRKY38(1)                                           >>>>>>>>>RAP2.2                 --------->WRKY18(1)                                          <---------ARR11(3)    - -AGL3          --------->At5g28300      <-----------GT1                      --------->ARR11(3)    < --ZmHOX2a(1)  ----------->GT1          <-----------GT1                      <---------CCA1(2) ------ -AGL2      --------->MYB52(1)<----------DOF2         --------->AHL20(2) ----------->GT1  --------->AHL20(2)   atgcagaaaatcacaaacggtcaatacaaacacttttgttaattacccttacaaaaaaaaatggaagttgaagggttgtatatctaaaactataaaatag  6002500                                 --------->YAB1                         ------------>CBF                        --------->YAB1            <---------AHL20(2)  <---------YAB1                                 <----------DOF2           --------->AHL20(2)  <-----------GT1                         <---------DAG2         --------->TOE2(3)<---------YAB1                               <---------MYB59   <---------YAB1       <-----------GT1                   <----------DOF2   <-----------GT1 -------->ICU4       <---------ICU4               <----------DOF2      --------->TOE1(3) ---------ATHB51 ----------->GT1<---------TOE2(3)<---------DAG2        --------->TOE2(3)            - ----->GT1 <---------AHL20(2) --------->YAB1  <-----------GT1       <-----------GT1                 <   aaattatgaaatattaatttggataattacaattaacataatttgtttttgccttttattcttttcaagtttaccttatttctttctaactcaagtttac  6002600                                    --------->TOE1(3)                       <----------DOF2   <-----------GT1                      --------------->AGL15                                 <---------At4g35610                      ======================================================MADS_MADS                      <---------------AGL15 <----------DOF2   <---------AHL20(2)                    <-----------GT1 <---------DAG2           --------->AHL20(1)  --------->ANAC46           <-----------GT1       <-----------GT1             <---------AHL20(1)  --------->ANAC58 -------->AHL20(2)  ---------->ID1  <---------MYB59         <---------CCA1(2)  --------->MYB52(1)  -- ---------AHL20(2) <-----------GT1  --------->TOE2(3)       <---------------AGL15--------->ANAC58 ---   atataatttgatttttccatttttccttttcaagtttaccttatttctttctaattcatcttatatatttagtagtatagcagacggaagaacaaataag  6002700                                                                           --------->ANAC58                             <------MYB46(1)                   ------>ZmHOX2a(2)                             <---------ANAC46                 <------ZmHOX2a(2)                             <------MYB83                  <---------HSFB2a(1)                  <---------MYB52(2)                       --------->MYB46(3)           <----------ID1    <---------ANAC55(2)  <---------GLK1(2)        --------->ANAC58      ---------->DOF2        ----------->GT1--------->ANAC58 <---------ARR14(2)   --------->TOE2(3)        --------->MYB59 --------->ANAC58 --------->ARR14(2) <---------DOF5.7(2)        --------->MYB46(2)    <------------CBF   --------->AtLEC2               - ------->DOF5.7(2)--------->MYB46(3)      ---------->DOF2  --------->HSFB2a(1)                ------- ------>TOE2(3) --------->MYB52(1)      <---------TOE2(3)  <---------HSFC1(2)                 -------   cgttaacttaaagaagacgaacgaacaaattaggtgaattttaagaaagcaagattgtggaacgatcggccatggacaaacaagacgagaagaagcaggg  6002800      --------->ARR14(3)      --------->GLK1(2)                                                                    <---------GLK1(2)      --------->ARR11(3)                                  --------->WRKY18(1)              --------->ARR11(3)      <---------ARR11(3)                           <---------ARR11(3)               --------->ATHB12      --------->ARR14(2)                           <-----------ARR10               <---------YAB1      <---------ARR14(3)      <---------GLK1(2)    --------->ARR11(3)      --------->ETT(2)<---------ARR11(3) ---------->RAV1(1)           <---------ARR11(3)  <---------CCA1(2)        <---------ETT(2)<---------ARR14(2) -->ANAC58             <----------ID1           --------->ANAC55(2)     ------>ZmHOX2a(1)  --------->ARR14(2) -->ANAC58           >>>>>>>>>WRKY18            <---------ANAC55(2) --------->ARR14(2)   ----------->ARR10   aacaacaaaatcttcatctacattgacgacaagatgctcacatggtaatcacatatctcagtcaaactcgattcctctcgacataaccattgagatactc  6002900                            ------>ZmHOX2a(2)                           <------ZmHOX2a(2)                          <-----------ARR10                          --------->AGP1                          --------->ARR11(3)                          <---------AGP1                          --------->ARR14(2)                          <---------ARR14(2)                          <---------ARR11(3)                     <-----------HVH21                    --------->YAB1                   <---------ATHB12                                         <-------TEIL                 --------->WOX13(1)                                 ----------->RAV1(1)               <---------ATHB12       <-----------ARR10            --------->ANAC46        ------>ZmHOX2a(1)<---------At4g35610                       --------->ANAC58        ==========================HOX2a_HOX2a                      --------->ANAC58        ===========================HOX2a_HOX2a                   --------->AtMYB61       --------->TOE2(2) --------->At4g35610                     <---------ALFIN1 --------->ANAC58       --------->TOE1(2) <---------CCA1(2)                      --------->ANAC46  --------->ANAC58   tcaagacttcctgcgaaatcaatcgtcagatctcgctccgtctctaagctctggtcgtccattaccaccacaccagagttcatcaagcatcggtccaaga  6003000                                                                              --------->ANAC55(2)                                                                     ----------->RAV1(1)                                     --------->ANAC58               <---------ALFIN1                                     --------->ANAC58             ----------->RAV1(1)                                     --------->ANAC46            --------->ANAC46               <----                                     <----------ID1             --------->LBD16                 <----                              --------->LBD16                  --------->ANAC46          <-------MYC3                             <---------HSFB2a(2)           ---------->ARF1    <---------ANAC55(2)      <---------ALFIN1       --------->HSFB2a(2) ------>ZmHOX2a(2)<---------ALFIN1       ------->MYC3   agacatcaccaccttgtgttctactaatcttccgaaaacacgacaagctgatcgttttctcgtctccccaacaccagaatacttattctcatgtgcaaga  6003100                                                            ------>ZmHOX2a(2)                                                 <---------ALFIN1     --------->HSFB2a(1)                                                <---------WRKY12      <---------HSFC1(2)                                             <---------ANAC58         <---------HSFB2a(1)                                             <---------ANAC46         --------->HSFC1(2)        -----         <---------GLK1(1)                   <---------ANAC58 --------->At4g35610             <------ -----ARR11(3)                   <---------MYB52(1)        <---------At4g35610           <---------ANAC46 -----GLK1(2)         ----------->GT1  <---------YAB1   ----------->ARR10              --------->ATHB12   ttatcacattgaaatccccaagaatggtttcatccgtcgtcttgattccgtccacggtttgatctgcttagaaggttctaaacagctcgtgatttgtaac  6003200                                               <---------ANAC46                                            ----------->TGA1               --------->CCA1(2)                                            ----------->HVH21          --------->LBD16                                           <-----------HVH21          --------->HSFB2a(2)                                        <------NtERF2                 <---------HSFB2a(2)                        ----------->RAV1(2)<---------------------WRI1<---------LBD16                    <---------DAG2     --------->MYB52(1)            <---------ANAC46             --------->HSFC1(2)      <---------ABI4(2)             <---------ARR14(2)      --------->At5g28300             --------->HSFB2a(1)   --------->ANAC58               <---------GLK1(1)       -----------  <----------DOF2   <----------DOF2--------->ANAC58          <------ZmHOX2a(1)  ------->TEIL ---->ZAT6  <-----------ARR10      --------->ANAC46      --------->TOE2(2)--------->ARR14(2) -----GT1  <---------GLK1(2)      ---------->DOF2        --------->TOE1(2)<---------ARR14(2)       --   cctactttgaaacgattcttccctttacctgagcctcaaggcaccggtgacgaatacaacgtaggagggtttctgggatatgaaccgatagagggtaaat  6003300  Previous    Next  AGI:  At5g18160.1    Description:  F-box family protein. Identical to F-box protein At5g18160 [Arabidopsis Thaliana] (GB:Q9FK54); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT4G09190.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN60954.1); contains InterPro domain F-box associated type 3 (InterPro:IPR013187); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 6002772    to: 6003911    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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