Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                --------->At4g35610              ------                                              --------->GLK1(2)                                ------                                             <---------GLK1(2)--------->ZAT2                   <-----                                             <---------ARR11(3)                                <-----                                             --------->ARR11(3)  --------->MYB52(1)         <-------- -------O2                             --------->ANAC58       <---------At4g35610           --------- ------>O2       <---------HSFB2a(2)   --------->ANAC58  <---------ICU4<---------ARR11(3)   --------- -AGL1           --------->HSFB2a(2)  --------->SPL7     --------->YAB1--------->ARR11(3)  <---------AHL20(2) -AG    --------->TOE2(3)           <---------SPL7      <---------ATHB12            --------->ZAT6   acgtcttaatccataacttatagaaacttaaaaaacttggtacgaaagattcttcttaatcatcagctaactaaatcttgtttttatcactaaatatttt  5995100      --------->AHL20(2)     <---------ATHB12   --------->WOX13(1) --->AHL20(1) --->AHL20(2) ----AHL20(1)                         --------->MYB46(3) <------ZmHOX2a(1) ----AHL20(2)                 <---------ANAC46   <------MYB83 -AHL20(1)                    <---------ANAC58   <------MYB46(1)        ---------->DOF2 >AHL20(1)                    <---------ANAC58  <---------AtMYB61     <---------YAB1          ------- >AHL20(2)             --------->AHL20(2)       --------->MYB59 --------->AHL20(2)         <---------   attagcaatcaaatattgtggaaaatgaattagcgtgttaaccaatgggtttggttataggaaatataaaatatcaaaggagagaagggaccttgtcaaa  5995200                           --------------->AGL15                           <---------------AGL15                          ----------------->AGL3                          <-----------------AGL3                          ----------------->AGL2                          <-----------------AGL1                          ----------------->AGL1                        --------->TCP15(1)                        <---------PCF2                     --------->ALFIN1                   <---------ANAC46        <----------DOF2                                       ----                   <---------ANAC58     <---------ARR11(3)                                       ----                   <---------ANAC58     --------->ARR11(3)                                      <----                   <---------O2        --------->REM1(1)                             <-----------GT1 --->DOF2 <---------HSFC1(2)         ----------->RAV1(1)         --------->REM1(2) <---------ANAC58 --HVH21  --------->HSFC1(2)------>ZmHOX2a(1)                 <---------ANAC46     <---------ANAC58   gaagacaatcgatacttcttaacgtgggtcctaaaatggcaacatcttttttttgtcatttcatgtgtgtagataagctctaatttcttacctcaccaat  5995300                                                             <---------AHL20(1)                                                          --------->AHL20(2)                                                       --------->YAB1                                                       <---------ICU4                                                       <--------HAHB4                                                      <---------YAB1                      <----------DOF2                                                    --------->YAB1                        <---------DAG2                 --------->ATHB12               <---------AHL20(2)                 <----------DOF2                 <---------ICU4               --------->ANAC55(2)            --------->YAB1                --------->ICU4                <---------ANAC55(2)            <---------ICU4       ------->TEIL<---------GLK1(1)          ----------->GT1--------->AHL20(1) <---------ALFIN1 ----->YAB1   <---------ICU4               --------->ICU4<---------YAB1     <---------ATHB12   <----- ------->GT1  --------->YAB1        <-------GAMYB   <---------ICU4<---------AHL20(2)   <-----------GT1 -----ATHB12<---------AHL20(2)  --------->GLK1(2)  --------->ICU4--------->AHL20(2)<---------DAG2----   ggttatatgaatataaaaatgatttctgtaaacaattctgttgaaattatgtaattatcattatatattaaatcactaatcaacactttatactttttaa  5995400                                                                                  *TSS                                                                            ------>ZmHOX2a(2)                                                                           <------ZmHOX2a(2)                                                                          <---------AGP1                                                                          --------->GLK1(2)                                                                          <---------ARR14(2)                                                                          --------->ARR14(2)                                                                          --------->ARR11(3)      --------->ZAT6                                                      <---------ARR11(3)     <---------ZAT14                      <---------CCA1(2)            <---------TOE2(3)   <---------bZIP60(1)                  <---------ANAC58        <-----------------AGL3   --------->bZIP60(1)                  <---------ANAC58  --------->YAB1 <------ZmHOX2a(1)      ----- ------GT1     <---------ANAC58    <---------DAG2      <----------DOF2 <---------TOE1(3)   --------->ANAC46 ----->ZAT6    <---------ANAC58    <----------DOF2<<<<<<<<<TBF1 =====================================   cagtgacaacactaaatgcgtccatttaagagtttcgcttttccgtctcttcttcttctttgatcatctatttaaggatctagagaaaccacttcgcaac  5995500                                                          --------->MYB46(3)                                                        ----------->RAV1(1)                                                       <----------ID1                                                  <---------ICU4                                                  --------->ATHB12                                                  --------->ATHB51                                                  <------------ATHB5                                                  -------->ATHB1                                                  <--------ATHB1                               ------>MYB83       --------->YAB1                   ------>ZmHOX2a(1)             <---------ATHB12            <---------ZAT18    ------>MYB46(1)   <---------ATHB51           <-----------HVH21 <---------MYB59  ------------>ATHB5       --------->ANAC46          <------MYB83 <---------ICU4        ----------------->AGL3    --------->ANAC58         --------->MYB59     <---------MYB46(2)  --------->ICU4        --------->ANAC58 ---->ICU4<------MYB46(1) <-----------GT1 --------->At4g35610 <---------ATHB12 ==============================================================MADS_MADS                 ---------->DOF2   gatgagggagataggtcactcctcaaaattaccaaacacaaattagctccaataattgcaacaaatcactctcacccaaacaaaacttttcaaaagccct  5995600                                       <---------HSFC1(1)                                       --------->HSFB2a(2)                                       <---------HSFB2a(2)                                    --------->ARR11(3)                                    <---------AGP1                                    ------->TEIL                                    <---------ARR14(2)                                           ----         --------->ATHB12           --------->ARR14(2)                                          <----        <---------ATHB12     <------ZmHOX2a(1)  ----------->GT1                             ------>ZmHOX2a(2)        --------->ICU4       ================HOX2a_HOX2a                                    =========      --------->GLK1(1) --------->ANAC46     --------->ARR14(2)                           --------->ARR11(3)  <---------HSFB2a(2)   --------->ANAC58     <---------ARR14(2)                           <---------ARR11(3)  --------->HSFB2a(2)   --------->ANAC58    --------->ATHB12                     --------->HSFB2a(2)  --------->LBD16  --------->MYB46(3) ------>ZmHOX2a(2)     --------->LBD16      <---------HSFB2a(2)-   aatccgagaaatcattcgacaacaacacgaaggagatggatctagaagattgggaaatactccccaaaatcaactacaagggtctcgaacttgatctcgg  5995700                                                                                             --------          --------->YAB1                                                            --------->GLK1(2)         <------ZmHOX2a(2)                                                         <---------ARR11(3)        <---------ARR14(2)                                                         <---------ARR14(2)        <---------ARR11(3)                         ----------->HVH21               --------->ARR14(2)        --------->ARR11(3)                     <---------HSFC1(2)                  <---------GLK1(2)       <------ZmHOX2a(1)                       --------->HSFC1(2)                  --------->ARR11(3) ----->WRKY18(1)                             --------->DAG2         --------->At4g35610   <---------ANAC46 -------HVH21                           --------->LBD16             <---------At4g35610   --------->ETT(1) =============HOX2a_HOX2a           <---------ALFIN1                ----------->RAV1(2)<-----------RAV1(1) -------->ICU4               <---------YAB1 ---------->DOF2         ===============================RAV   tcatgaagaggatcatgaagttacgaagatgatgagaaacaccgcaaaaagcttcgacagtgattacttcatctgcccaattcaagattctgtcggaaag  5995800                             --------->PCF2                            --------->PCF5                            --------->TCP16(1)                            <---------PCF2                         --------->ALFIN1                       <---------ANAC46                       <---------ANAC58                                            <----------ID1                       <---------ANAC58                                            --------->ANAC58                   ------>ZmHOX2a(2)                                               --------->ANAC58                   ===============================HOX2a_HOX2a                     --------->SPL7                  --------->CCA1(2)                                             --------->WRKY12                  <------ZmHOX2a(2)              --------->GLK1(2)             --------->ALFIN1                  ================================HOX2a_HOX2a                 <-------PIF5                 >>>>>>>>>GATA-1                <---------GLK1(2)             --------->LBD16                 >>>>>>>>>GATA-3  --------->ANAC58                            ------->PIF5                 >>>>>>>>>GATA-2  --------->ANAC58                           <---------O2          --                 --------->AGP1   <---------ALFIN1                           <---------ANAC46      <-                 <---------ARR11(3)             <---------ARR14(2)           --------->O2   <------ZmHOX2a(2)                 >>>>>>>>>GATA-4<---------ALFIN1--------->ARR14(2) --------->TOE2(3)       --------->ARR11(3)                 --------->ARR11(3)        ------>ZmHOX2a(1)      --------->HSFB2a(1)      <---------ARR11(3)                --------->GLK1(1) --------->ANAC46                <---------HSFB2a(1)  ---------->DOF2 -->DOF2   <---------At4g35610  ----------->RAV1(1)    <---------ATHB12<-----------HVH21  --------->YAB1   acagagtttcttcatcagagatctagcgtggtccccacacaactcctccagattccaataacttgggaacctttgtcccccgtggacgacaaagatcaca  5995900                        --------->ARR14(2)                     --------->ANAC46                                 <-----------GT1                    --------->HSFB2a(2)                             <---------KAN4(2)                    <---------LBD16         <---------LBD16     ------>NtERF2                --------->GLK1(1)   --------->ARR14(2)          --------->LBD16                <---------GLK1(1)   <---------ARR14(2)         --------->DEAR3(1)           ------>ZmHOX2a(2)      --------->LBD16             <------NtERF2           <---------LBD16       --------->ANAC46            ------>NtERF2          <------ZmHOX2a(2)      --------->ANAC58           --------->DEAR3(1)         <---------ARR14(2)     <---------LBD16             <---------DEAR3(1)         --------->ARR14(2)   --------->ARR14(2)          <-----------HVH21   --------->ANAC58     <---------LBD16<---------HSFB2a(2)<----------DOF2   --------->ANAC46     --------->ANAC58    ----------->RAV1(2) <---------ARR14(2)----------->HVH21--------->ATERF1(1)--------->ANAC46   ------->TEIL<---------ARR14(2)--------->ANAC58        <---------ANAC58--------->TOE1(3) ------->YAB1  --------->ARR14(2)--------->ANAC55(1)     <---------ANAC58--------->TOE2(3)       ---- --------ICU4--------->LBD16  <---------ARR14(2)    <----------DOF2--------->YAB1                <---   ataagtacctggatccggatttctcggaaccagacccggaacttttgacggagtcttttccgtcgccgagaataaccttcaagaaatcgaaggaaaccga  5996000  Previous    Next  AGI:  At5g18130.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G03870.2); similar to unknown [Medicago truncatula] (GB:ABK28852.1) Range:  from: 5995482    to: 5997500    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version