Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                            --------->LBD16                         --------->MYB52(1)              <---------HSFB2a(2)                    ------->MYC3                         --------->HSFB2a(2)                    <-------MYC3                        ------>ZmHOX2a(2)                   <---------At4g35610                  <---------LBD16                <-------TEIL                          --------->ARR14(2)             <---------At4g35610                      <---------ARR14(2)             <---------ZAT2                      <-------TEIL             --------->ZAT2                     <------ZmHOX2a(2)             --------->At4g35610                --------->CCA1(2)                                 ---  <---------ARR11(3)<-------MYC2               --------->ARR11(3)                              ------  --------->ARR11(3)------->MYC2<------NtERF2  <---------ARR14(2)     --------->ARR11(3)       ------ ->GLK1(1)  --------->ARR14(2) --------->ANAC58--------->ARR14(2)     <-----------HVH21      -------- ->ARR14(2) <---------ARR14(2) --------->ANAC58<---------ARR11(3)   --------->DAG2  <---------ANAC46 --ARR14(2)<------ZmHOX2a(1)------->GAMYB      --------->AGP1     ---------->DOF2   <---------ANAC55(2)   caaagatgtttgaggagctgcatatgccaacggaggcaactatgttcaagatccatgatccggaagggaaaaggtcatgggatgttatgtataagttcag  5986800                            --------->ARR14(2)                            <---------ARR14(2)                          <------MYB46(1)                          <------MYB83                        <--------P                       <-------GAMYB                      <---------MYB46(3)                                                      -------             --------->GLK1(2)                                                                -------            --------->ARR14(2)                                                                ------>MYB46(1)            <---------ARR14(2)                              ------>ZmHOX2a(2)                 ------>MYB83            <---------ARR11(3)                             <------ZmHOX2a(2)                 -------- <-----------GT1      --------->MYB55(2)    <---------ARR11(3)   --------->ARR11(3)         --------- ------>YAB1<---------GLK1(2)           ---------->DOF2   <---------ARR14(2)    --------->ANAC58 ----->GT1  --------->ARR11(3)<-------TEIL  --------->ARR11(3)   <---------ARR11(3)         <-------- --->ANAC55(2)     <---------ZAT2<---------MYB52(1)       --------->ARR14(2)    --------->ANAC58 ->ZAT14  ----------->ARR10 <---------GLK1(2)            <---------GLK1(1) <----------DOF2  <--------   taataaccagacaagattctgtgctggttggattcgtttggctaaagaacttggtttggagatcggagatgtttgcactttcacgctcatcaaacctacc  5986900                                                                                                  ---                                                                                                  <--                                                                                                  ---                                                                                                 ----                                         --------->ARR11(3)                                    <-----                                         <---------ARR11(3)                                   <------                                        --------->YAB1                                        -------   <---------ANAC46                    <---------YAB1                                        <-------   <---------ANAC58                  --------->CCA1(2)                                       <-------   <---------ANAC58                 --------->ARR11(1)                                       -------- -->MYB52(1)                        <---------ARR11(3)                                   <----------DOF2 ->P                                --------->ARR11(3)                                  <---------ICU4 ->MYB55(1)                         --------->ARR14(2)                            --------->MYB59<--- >AtMYB61                           <---------ARR14(2)            <---------ARR11(3)  --------->GLK1(2) -MYB111(1)                 --------->ICU4                        --------->ARR11(3) <---------GLK1(2) -MYB59                   --------->CCA1(2)        --------->YAB1 --------->GLK1(2) <------ZmHOX2a(1)   gagatgcttgttagagtctctaaataagagatgatgaagatatgatattagtttgataactctctcaaaatctagttaatgtgttaggaatctttactaa  5987000 ----->HAHB4 -------ICU4 ------>ATHB12 ----->ICU4<---------AHL20(2) ----ICU4  <-----------GT1 ---------AGL15 -------->AGL15           ---------->ID1 ----------AGL2         <-----------RAV1(1)        <---------------AtSPL8 ----------AGL3         <---------MYB46(3)      <---------YAB1                   --------->LBD16 --------->AGL3   <-----------GT1              <---------TOE2(3)               <---------LBD16  <---- ------ATHB51  ----------->GT1            <----------DOF2     <<<<<<<<<<<<<<<<<LFY         <---------   ttatgggtcttattaacttgttacatttgttgtttctcttaagactttttatgttagtacaagtatacaatggttcttctatccggtttggaattacaaa  5987100                               ----------->GT1                               <------MYB46(1)                     <---------YAB1                   ------>ZmHOX2a(2)                              --------->AHL20(2)                   <---------LBD16                           <---------YAB1                        --                  --------->ARR14(1)                   <---------AHL20(1)                          <-                  --------->CCA1(2)                    --------->AHL20(1)                          --                  <------ZmHOX2a(2)                    <---------ARR11(3)                          --                 --------->ARR14(2)                    <---------AHL20(2)                          <-                 --------->AGP1<------MYB83            --------->AHL20(2)                *TSS     ---                 --------->ARR11(1)               ------------>CBF<---------AHL20(2) --------->ARR11(3)                 --------->ARR11(3)               --------->MYB46(3)      --------->GLK1(2)       <--                 <---------ARR14(2)             <-----------GT1  --------->YAB1      <---------ARR11(3)    --------->MYB52(1)    --------->ATHB12   --------->YAB1 ------------>CBF        <---------GLK1(1) -----GLK1(2)  ----------->ARR10         <---------AHL20(2)<-----------GT1--------->ARR14(2)      <-- --GT1 ------->GAMYB --------->LBD16  ----------->GT1  --------->ARR11(3) <---------ARR14(2)    -----   ttctcttaaccgagtattagatccggtttgatttggtttatagttaattttaaccaatatattacaattttaatagaatccgatagaaatcttcacatca  5987200           --------->ANAC46                                     ------>NtERF2       ------>MYB83                   --------->GLK1(2)         --------->LBD16       ------>MYB46(1)                <---------ARR14(2)       --------->ATERF1(2)      XXXXXXXXXXXXXXXXXXXX>MIR837-3P --------->GLK1(1)         <---------DEAR3(1)     <---------MYB59                 <---------GLK1(1)         <---------ATERF1(2)     <---------MYB46(2)       <---------HSFB2a(2)              --------->DEAR3(1)  <-----------GT1             ------>ZmHOX2a(1)               <---------LBD16 ------->ATHB51               --------->HSFB2a(2)  <---------MYB46(3) -------HAHB4            <---------HSFB2a(1)       ------>NtERF2<---------ATERF1(1) ------->YAB1            <---------At4g35610       --------->ABI4(2) ------>ATHB1            --------->HSFB2a(1)      --------->ALFIN1 --------ICU4            <---------HSFC1(2)       <---------DEAR3(1)           <---------TOE1(1) ------>ICU4             <---------ZAT2         <---------MYB46(3)          <---------SPL7 -------ATHB51           --------->At4g35610   <---------DEAR3(1)           <-----------HVH21 -------ATHB12           --------->HSFC1(2)   <---------ZAT14 --------->ATERF1(1)              ------ ---->WOX13(1)--------->MYB52(1)   <------ZmHOX2a(1)<------NtERF2<------NtERF2 <---------TOE2(1)   attattaccaaacacaaaactgatggaagctcctagaggaaatctgagagcggtggctcttatcgccggcgataacaacgtccgaggctgtcttcaattc  5987300                <----------DOF2             <---------MYB52(1)            --------->LBD16          <---------LBD16        --------->ARR14(2)        <---------ARR14(2)                                             <---------At4g35610 <---------ANAC58       <---------GLK1(1)                                               --------->At4g35610 <---------ANAC58    <---------ARR11(3)            <---------AHL20(2)             --------->ATHB12          <---------ANAC46  --------->ANAC58        <---------DDF1                 --------->ARR11(3)            <----------DOF2  --------->ANAC58       --------->ETT(2)                <---------ARR11(3)            ==============  --------->ANAC46       <---------ETT(2)               <---------GLK1(1)      <---------DEAR3(1) --------->AtSPL3     <---------ANAC46       <------ZmHOX2a(1)  <---------ATHB12<-----------RAV1(1)   gtacaagacatttccggtctttctgcgtcgacatttttaatctctgaggacttgtttgatatctcactcattgagctctggtctgtggtctttgtgtgtt  5987400                                 ------>ZmHOX2a(2)                                <------ZmHOX2a(2)                                <---------GLK1(1)                                =======================HOX2a_HOX2a                                =============HOX2a_HOX2a                               <---------ARR14(2)                               --------->ARR14(2)                               <---------ARR11(3)                               <-----------ARR10                               --------->ARR14(3)                               --------->ARR11(3)                        <---------LBD16                       <---------LBD16                                                              -                    ----------->HVH21                                                              --                   <-----------HVH21                                                   --------------                  --------->TGA1a======================HOX2a_HOX2a                     <-------------                  <---------bZIP60(1)                                                 <--------------                  --------->bZIP60(1)                                                 <--------------                <---------ICU4 <---------ARR14(3)            --------->GLK1(1)        ---------------         <-----------ARR10     <---------AGP1                <---------GLK1(1)        ===============         --------->ARR14(2)  ----------->ARR10  ------>ZmHOX2a(1)                     ---------------        ================================HOX2a_HOX2a<---------ANAC58                 <---------bZIP60(1)        <------ZmHOX2a(1)--------->LBD16      ----------->RAV1(2)                   --------->bZIP60(1)        ===============================HOX2a_HOX2a <---------ANAC58   <-----------GT1 <-------------- ===========================bZIP_DOF  <------ZmHOX2a(1)<---------AtLEC2    <----------DOF2        <--   tttgtttacaggaactactcatgtcaccgggaagatctcaggactctctcctggcttccatggatttcatattcactcttttggtgataccacaaatggc  5987500 ------>TEIL ------->REM1(1) ->AGL15 --AGL15 ---AGL2 ---AGL1                            --------->At4g35610 -->AGL2              ----------------->AGL3 =======================================MADS_MADS                               <---------ANAC58 -->AGL3              <---------YAB1--------->ZAT2       --------->At4g35610    <---------ANAC58 ---AGL3         <---------MYB46(3) <---------ZAT2  <----------DOF2             <---------ANAC46 ----NtERF2  --------->MYB52(2)     <---------At4g35610  <---------At4g35610 <--------P   tgcatctctactggtttgtttgttatcaattttagttctgctgagtttgaattactttcagatggattgtttttttttggtagcttgtgctacttacaag  5987600                                                            --------->YAB1            --------->YAB1                                                           XXXXXXXXXXXXXXXXXXXX>MIR172A/B                                                           XXXXXXXXXXXXXXXXXXXX>MIR172E <---------YAB1                                                          --------->ARR14(2)         <------ZmHOX2a(2)                                                          XXXXXXXXXXXXXXXXXXXX>MIR172C/D--------->ICU4                              ---------->DOF2             <---------ARR14(2)         ================                      <----------DOF2                     ------->TEIL       <------MYB83<---------ICU4                     --------->TOE1(3)                   <---------CCA1(2)   <------MYB46(1)                  <-----------GT1                    ----------->GT1        <---------AtMYB61 <---------WRKY18(1) --------->TOE2(3)        <-------TEIL--------->GLK1(2)<---------WOX13(1)       <   tcttgactgtttctcttaaataacctttatctaaaagactgatacacatacagacatgtgaatcttgatgacactggattggtttggatcataattttag  5987700  Previous    Next  AGI:  At5g18090.1    Description:  transcriptional factor B3 family protein. similar to transcriptional factor B3 family protein [Arabidopsis thaliana] (TAIR:AT5G18000.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN82372.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340) Range:  from: 5985367    to: 5987167    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g18100.1    Description:  CSD3 (COPPER/ZINC SUPEROXIDE DISMUTASE 3). similar to CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1) [Arabidopsis thaliana] (TAIR:AT1G08830.2); similar to CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1), copper, zinc superoxide dismutase [Arabidopsis thaliana] (TAIR:AT1G08830.1); similar to putative CuZn-superoxide dismutase [Populus tremula x Populus tremuloides] (GB:CAC33847.1); similar to putative CuZn-superoxide dismutase [Populus tremula x Populus tremuloides] (GB:CAC33846.2); contains InterPro domain Superoxide dismutase, copper/zinc binding; (InterPro:IPR001424) Range:  from: 5987189    to: 5988887    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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