Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        <-----------HVH21                                                             <---------ICU4     --------->ANAC46                                                               -------->HAHB4 ------->GAMYB                                                                     <---------YAB1 ---------ALFIN1                                              --------->TOE1(3)    <---------ATHB51 ---->MYB46(1)                                   <---------AHL20(2)                --------->ICU4 ------>P                                   <---------AHL20(2)--------->TOE2(3)  --------->YAB1 ---->MYB83                          --------->YAB1  <---------ICU4             --------->AHL20(2) ----->AtMYB61             <---------AHL20(1)   --------->AHL20(2)          --------->MYB46(3) ----->MYB46(3) <-----------GT1     <---------YAB1   --------->ATHB12      -------->P   <---------ICU4 ->SPL7   --------->ANAC55(2)  <----------DOF2  <---------AHL20(2)    --------->ZAT6<---------AHL20(2)   caactccccttcacgttttaatctcttaatatacttttattataagttaattaaatgatttcaaccttagtaatactaaccattaattattcatttctaa  5934600                                                         ------>ZmHOX2a(2)                                                        <------ZmHOX2a(2)                                                       <---------ARR14(3)                                                       <-----------ARR10                                                       --------->ARR14(3)                                                       --------->ARR11(3)                                                       <---------AGP1                                                  <---------ATHB12                                                --------->WOX13(1)                                               --------->AHL20(2)                                               <---------AHL20(2)                                              <---------ATHB12        --------->AHL20(2)                                            --------->WOX13(1)        <---------AHL20(2)                      <----------DOF2    --------->TOE2(3)     --------->YAB1        <---------AHL20(2)        <---------CCA1(1)    <---------ARR14(2)     <---------ARR11(3)           <---------RVE1(1)    <---------ARR11(3)                  --------->ANAC58     --------->AHL20(1)          <---------ARR11(3)    --------->ARR14(2)      <----------ID1     <---------AHL20(1)          --------->ARR11(3)--------->YAB1 --------->AHL20(2)       --------->ANAC58   tctccaatattttttttgaaaaacctttctgttcagatattttcgtcaattaatcaagatctcattcataaattaaaaaaaaaaacaaaattcaagctaa  5934700                                 <---------ANAC58                                 <---------ANAC55(2)                                 <---------ANAC58             --------------->AGL15                    --------->TOE2(3)                 <---------AHL20(2)         ------>MYB83------>ZmHOX2a(1)                --------->AHL20(2)         ------>MYB46(1)       --------->AHL20(2)    <---------AHL20(1)         ----------->RAV1(1)<---------ICU4           --------->AHL20(2)        --------->TOE2(3)       <---------MYB59     --------->AHL20(1)        <---------AHL20(2)        --------->YAB1       --------->MYB46(3)  --------->AHL20(2)   <---------MYB52(1)       ----------->GT1      --------->ANAC58     <---------AHL20(2)  ----------->GT1<---------------AGL15      --------->ANAC46    <---------AHL20(2)--------->At4g35610    ---------->DOF2<---------AHL20(2)      --------->ANAC58    --------->AHL20(2)<---------At4g35610------>ZmHOX2a(1) --------->AHL20(2)-- <-------TEIL       --------->TOE1(3)<-----------RAV1(1)     ----------------->AGL3                <-   aaatacatacccaacaaaaattccttaaaaaaattacttatggggcatctggtaatttaattttcctataaaagatggcaatattaattcagtttttttt  5934800                               <---------ANAC58                               <---------ANAC58                         --------->AHL20(1)                         <---------AHL20(2)                         <---------AHL20(1)                        --------->YAB1                        <---------AHL20(2)                        --------->AHL20(2)                     --------->YAB1                    --------->AHL20(2)     --------->ZAT6            <---------YAB1<---------YAB1  --------->At4g35610                                <-------    <-----------GT1 <---------AHL20(2)    <---------At4g35610                                -------- ------->AHL20(2) --------->TOE2(3)<---------ANAC58             <---------ICU4               <------- --------AHL20(2) <----------DOF2  <---------ANAC58  <---------ZAT18                 --------->AHL20(2)   tttaatttaccaatatgatactttaattatatttcttacttgttagctctactaatgcacacatacttatttctacgaatataagaaaaaaatactgaac  5934900                                         ----------->GT1                                       <-------GAMYB                                      --------->ALFIN1                                      <--------                                  <---------TGA1a                                           ---------                                  --------->TGA1a                                       ----------->TBP                                  =============MYC_MYB                                  <---------AHL20(2)                              --------->ANAC58                                      --------->YAB1                              --------->ANAC46                                     <---------ATHB12                           --------->ZAT14                                         <---------ATHB51                          ------>ZmHOX2a(1)                                    ------------>CBF    -- --ZAT18       ----------->GT1--------->ANAC58                               --------->ANAC46<------- ->ZAT14     ===============================bZIP_DOF--------->TOE2(3)       <-------TEIL--------->AHL20(2) --ZAT14     ---------->DOF2<---------ALFIN1  --------->YAB1            ------->TEIL--------->AHL20(2)   tcaaacaatagacaaaaaagaaataatcctacactcaagtgtgttgaaaaataacatcaaattcagagaaaatgcacatacaccaataatataaataaat  5935000                                                  ------>ZmHOX2a(2)                      <------------CBF           <------ZmHOX2a(2)                    <---------AHL20(2)          --------->ARR11(3)               --------->AHL20(2)               <-----------ARR10         --------->YAB1                         <---------ARR14(2)       --------->AHL20(2)                       --------->ARR14(2)      --------->AHL20(2)                        <---------ARR11(3)      <---------AHL20(2)                        <---------AGP1  <---------RVE1(1)<---------AHL20(2)           --------->AGP1  <---------CCA1(1)--------->AHL20(2)      ----------->RAV1(1) <---------ARR11(3)<---------AHL20(1)     <---------ALFIN1 --------->ARR11(3)--------->AHL20(1)     --------->DEAR3(1)                       ------->TEIL -AHL20(2)     <---------AHL20(2)         --------->AtMYB61                --------->YAB1 >AHL20(2)--------->AHL20(2)             --------->MYB46(3)----------->HVH21      <---------CCA1(2) --------->GT1--------->AHL20(2)        *TSS   <---------CCA1(2)          <---------ATHB12 --AHL20(2) --------->YAB1      --------->RVE1(1)--------->CCA1(2)      --------->MYB52(1)     <-----   agggatatttaaaataataaataaaattgcgaaaatatcgagcaccaccagatctacagaaatgacacagagcccaacgatgatgtatctcgtttatttt  5935100                                                                                                   <-                                                                                                  <--                       <---------ALFIN1                                                          <---                     <---------ALFIN1                                                   --------->HSFC1(2)                    <---------ZAT18                                                     --------->HSFB2a(1)                    --------->ZAT14                               <----------DOF2      --------->ARR14(2)                  --------->ANAC46                                <---------DAG2      <---------GLK1(2)                 --------->DEAR3(1)                           ------>MYB83      ------>ZmHOX2a(1)<---              --------->ANAC46             <----------DOF2    ------>MYB46(1)  <---------ALFIN1 ----- ------GT1    <---------ALFIN1   ------>ZmHOX2a(1)            -------->P     ------>ZmHOX2a(1)------>ZmHOX2a(1)   cgctataaataaactcacacagcccactcttcttcctcgctctctctttcgccttctcttagcctaccctttttccttcctcctctccgattcttcctcc  5935200                                                                              <-----------GT1                                                                             <---------YAB1                                                                           --------->YAB1                                <---------ANAC55(2)                        <---------ICU4                                <---------ANAC58                          <---------YAB1    <-------TEIL                --------->ANAC55(2)                       --------->ICU4 ----------RAV1(2)              <---------ANAC58     <----------DOF2 --------->ANAC46 -------MYB52(1)             ------>ZmHOX2a(1) <---------At4g35610   --------->ANAC58 --------TGA1               <---------ANAC58   --------->At4g35610   --------->ANAC58          <----- --------HVH21 <----------DOF2  <---------ANAC55(1) <---------DAG2   --------->bZIP60(2) <---------DAG2 ---->ANAC46------>NtERF2   <---------ANAC58 <-----------GT1       <---------ALFIN1      <----------DOF2   gtcaggttcgtctccgactttctatgtcttccttacgtctctcttatttagctccctttccttccttctccacgttattattactacttcgcttttagtg  5935300                                                                                                  <--                                                                                                  <--                                                                                                  <--                                                                                                  <--                                                                                             <-------                                                                                            <--------                                                                                        ------>ZmHOX2a(2)                                                                                       <------ZmHOX2a(2)                                        <---------At4g35610                            --------->CCA1(2)                                     <---------MYB52(1) ------>ZmHOX2a(2)             <---------ARR11(3)                                  ------>ZmHOX2a(2)    <------ZmHOX2a(2)              --------->ARR11(3)                                <---------AGP1        --------->AGP1                  --------->ARR14(2)                                <---------ARR14(2)    <---------ARR11(3)              <---------ARR14(2)                                --------->ARR14(2)    --------->ARR11(3)              --------->AGP1                             ------>ZmHOX2a(1) <---------MYB46(3)                     <---------AGP1                             =================================HOX2a_HOX2a<-------TEIL<---------CCA1(2) ----ZAT6                    ==================================HOX2a_HOX2a          ----------->ARR10   tgattcgtttcattctcgtttttttatattcctcgatctgtttgctcatttgttgagatctattcgctatgtgagttcatttgactcagatctggatatt  5935400                              --------->ARR14(2)                              <---------ARR14(2)                              <---------ARR11(3)                              <---------AGP1                           --------->HSFB2a(2)                           <---------HSFB2a(2)                          <---------LBD16                   ------>ZmHOX2a(2)                  <------ZmHOX2a(2)                                     <------MYB46(1)                  --------->CCA1(2)             <-----------TGA1        <------MYB83                < -------ANAC58   --------->AGP1                --------->YAB1       -------->HAHB4                 -- -------ANAC55(1)--------->ARR11(3)       <------ZmHOX2a(2)         --------->ATHB12               -- -------ANAC58   <---------AGP1 ------>ZmHOX2a(2)     <----------DOF2 <---------WOX13(1)           <- -------ANAC46   --------->ARR14(2)      --------->ARR11(3)        --------->ICU4                  <- --CCA1(1)       <---------ARR11(3)      <---------ARR11(3)<----------DOF2               --------->ARR14(2) -ARR11(3)       <---------ARR14(2)  <-----------GT1 <---------ICU4<---------YAB1        <---------ARR14(2)   tcgtgttgttcgatttatagatctggtttctggatctgtttacgatctatcgtcatctttcctttgaaaatgattggtgtttctgtgttcgtattcgttt  5935500  Previous    Next  AGI:  At5g17920.1    Description:  ATCIMS (COBALAMIN-INDEPENDENT METHIONINE SYNTHASE); 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase/ methionine synthase. Identical to 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (CIMS) [Arabidopsis Thaliana] (GB:O50008); similar to AtMS2 (Arabidopsis thaliana methionine synthase 2) [Arabidopsis thaliana] (TAIR:AT3G03780.3); similar to AtMS2 (Arabidopsis thaliana methionine synthase 2), 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase [Arabidopsis thaliana] (TAIR:AT3G03780.2); similar to AtMS2 (Arabidopsis thaliana methionine synthase 2), 5-methyltetrahydropteroyltrigluta Range:  from: 5935040    to: 5939489    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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