Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                              --------->AHL20(2)                                    --------->YAB1                                   <<<<<<<<<ARR2                                 --------->WOX13(1)                                --------->MYB46(3)                                        <---------AHL20(1)          --------->LBD16     --------->MYB52(1)     --------->AHL20(2)                   --------->AHL20(2)        --------->ANAC46<---------AHL20(2)  <---------AHL20(2)                            <---------AHL20(2)       xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------AHL20(2)                    <---------AHL20(2)       <---------At5g28300  <---------MYB52(2)  --------->AHL20(2)                    --------->AHL20(2) -->CCA1(2)        --------->AHL20(1)   <---------AHL20(2)                    --------->TOE2(3) --AHL20(1)        <---------AHL20(1)   --------->AHL20(2)       --------->AHL20(2)  --------->AHL20(2) ->AHL20(1)     --------->AHL20(2) <---------ATHB12  <---------AHL20(2)      ----------->GT1   aagacgatataccgcagaaaaaatattaaaactaacaatcaaaaaattatataatttaaacacaaaataaaacaatacaacgtaaaatttaaaaaattta  5916600                                                                                <---------AHL20(2)                                                                                <---------AHL20(1)                                                                                --------->AHL20(1)                                                                           <---------AHL20(2)               <----------DOF2                                             --------->AHL20(2)            <---------ARR11(1)                                         <---------AHL20(2)            <---------ARR14(2)                                         --------->AHL20(2)           -            --------->GLK1(2)                                      --------->AHL20(2)     <---------ICU4            --------->ARR14(2)   <---------ICU4                    <---------AHL20(2)    --------->ICU4            ------->TEIL<---------ZAT6                       --------->ARR11(3)--------->YAB1<-------           <---------CCA1(2)<---------AHL20(2)               <---------ARR11(3)--------->AHL20(2) ---           <---------ARR14(1)---------->DOF2   <-----------GT1  <----------DOF2<---------AHL20(2) ---   gtaacccaaactcgaatcttttagtagtattaaaagaattacacatatttttctcaccaaaattatcttttaattttttaattatattctacttattacc  5916700      --------->AHL20(2)      <---------AHL20(2)      --------->ATHB51      <---------ICU4                                                     <---------YAB1     <---------YAB1                    <---------ICU4                    <---------AHL20(2)     --------->ICU4                  --------->ANAC55(2)           <---------YAB1   --------->YAB1                --------->ANAC55(2)           --------->KAN4(2)   <--------HAHB4                <---------ANAC58  <---------ANAC55(2)  --------->AHL20(2)  <---------YAB1                 <---------ANAC58  --------->ANAC55(2) --------->YAB1 -------->YAB1                   <---------ANAC55(2)          <---------KAN4(1)                <----- ----GT1                       <-----------GT1   <-----------GT1<---------YAB1                 ------ --->MYB83            <---------MYB52(1)      <---------ICU4 <---------YAB1                    <----- --->MYB46(1)       <---------MYB46(3)--------->ICU4      <---------YAB1<---------AHL20(2)     ------   aactataattatttccaagtagtcgttagtaagttacttacttattagttattacatgttttgattattctaattttaattgtcaaacacattagaatat  5916800                                                                                       <---------GLK1(1)                                                                               <---------AHL20(2)                       <-----------GT1                                        --------->AHL20(2)    -                      <-----------GT1                                         <---------AHL20(2)    <       <---------HSFB2a(2)                                                   <---------YAB1       <--       --------->HSFB2a(2)  <----------DOF2                               <---------YAB1  --------->TOE2(3) ----ARR11(3)     <---------YAB1                                          <---------AHL20(2)      <-- --->ARR11(3)    <---------AHL20(2)                                      --------->YAB1--------->GLK1(1) ----AHL20(1)  <---------YAB1                <---------YAB1              <---------AHL20(1)       --- --->AHL20(1)  <---------AHL20(2)          <-----------GT1               --------->AHL20(2)      ----   ttttaaactctagaaatattattttaaacactttagttttgaattttaccattgcatttgaacaacttgtttcaatattattaaataagaaatctcaaat  5916900                                                     ------------>CBF                                                   --------->TOE1(3)                                                   --------->TOE2(3)                                            --------->LBD16          --------->DAG2                --------->GLK1(2)         ---------->DOF2               --------->ARR14(2)      --------->ANAC46                 <---------ARR14(2)      --------->ANAC58                 --------->KAN4(2)      --------->ANAC58                --------->KAN4(1)    --------->CCA1(2)                 <----------TaMYB80                  <---------TOE2(3) -------->AHL20(2)                    <---------KAN4(1)                 *TSS ---------AHL20(2)                   ---------->TaMYB80      <----------DOF2 -------YAB1           <---------AHL20(2)  --------->HSFB2a(2)     <---------ANAC58 -------AHL20(2)       --------->AHL20(2)  <---------HSFB2a(2)     <---------ANAC58             ----- ------>AHL20(2)       --------->AHL20(1) <---------LBD16 <---------ARR11(3)                   <----- ----->TOE2(3)  ----------->GT1<------------CBF --------->GLK1(1)  <---------ANAC46            ------   attaatatacgaaaaggagagaaaataaaatagtattggcatattctgggaaaccttcaatttctttttgtgtgttaagaatagatagatgagagtgatg  5917000                         --------->ZAT2                         <---------At4g35610                         <---------ZAT2                         --------->At4g35610                       <-----------RAV1(2)                                                          <                       --------->MYB46(3)                                                          <-                     --------->MYB52(1)    <------NtERF2                                    <--------     ---------->DOF2--------->AtMYB61     ------>NtERF2          <---------At5g28300    <------ZmHOX2a(1) ---->ATHB12       --------->MYB46(3)    --------->DEAR3(1)<---------ZAT14      <---------At4g35610<- ----YAB1          <---------MYB55(2)    <---------ANAC46  --------->ZAT14      --------->At4g35610-- --->ICU4   --------->CCA1(2)      ----------->HVH21   ------>NtERF2            ----------->RAV1(2)--   atttggagaaagagagatggaaccaccagctgctcgtgtaacgccgtcgattaaggccgactgtagtcacagcgtcaacatcatctgcgaggaaacagta  5917100                                               --------->ARR14(2)                                               <---------ARR14(2)                                               <---------ARR11(3)                                               <---------ARR11(1)                                      <------NtERF2                                     --------->LBD16                           <------NtERF2       <-----------ARR10                        ------>NtERF2<---------HSFB2a(2)             <---------At4g35610     --------->HSFB2a(2)                      <------ZmHOX2a(1)             --------->At4g35610     ------>NtERF2                           --------->ANAC46            --------->ANAC46        <---------ANAC46                         --------->ANAC58         <-----------HVH21--------->RAP2.6(2) --------->GLK1(1)        <---------ARR14(2) ---------ALFIN1  --------->AtMYB61 <---------LBD16                <---------LBD16 --------ZAT14   --------->O2<---------DAG2   <---------GLK1(1)   --------->ALFIN1 -------AtSPL3  ------>NtERF2<----------DOF2  <---------CCA1(2) <---------ANAC58 --------ZAT18 --------->RAP2.6(2)  --------->LBD16             <---------ANAC46       <---------ARR11(3) ------->ZAT18 <---------ALFIN1    <---------LBD16              <---------ANAC58       --------->ARR11(3) ------->ZAT14--------->MYB46(3) --------->ANAC46              <-------TEIL  --------->ANAC58     ---   ctgcactcccttgtcagccacctctcggccgctttacgccgggaaggcatatctgtgtttgtggatgcgtgcggattgcaggaaaccaagttcttctcca  5917200                                                    ----------->HVH21                           <----               ----------->HVH21            <-------GAMYB                                <---------ARR11(3)               --------->WRKY38(1)         ----------->GT1                               --------->ARR11(3)               --------->WRKY12            <---------MYB46(3)                         <---------TOE1(2)              <---------MYB52(1)          <---------ANAC46                           ------>ZmHOX2a(1)             --------->At4g35610          <---------AtMYB61                         --------->TOE2(3)            <---------MYB46(3)          <---------MYB46(3)                   <---------TOE2(2)  <----      --------->GLK1(2)                --------->ALFIN1                  <------ZmHOX2a(2)    =======  --------->YAB1                    <---------AtMYB61       --------->ALFIN1 <---------TOE1(2)------- ------>AHL20(2)      --------->ALFIN1 <---------AtMYB61 --------->ALFIN1===================HOX2a_HOX2a   ttaaacagaatcagccgttgacagatggggctagggttttggtggtggttatttccgacgaggtggagttctacgatccttggtttcctaagttcttaaa  5917300                                 <---------MYB46(3)                                 --------->MYB55(2)                                <---------AtMYB61                             --------->ALFIN1                            <-------MYC2                            <-------MYC3                            ------->MYC2                            ------->MYC3                            ------->PIF5                            <-------PIF5                            <-------MYC4                            ------->MYC4                           --------->bZIP60(2)                           <---------TGA1a                           <---------ANAC46                    <---------WRKY18(1)                           --------->O2                       --------->WRKY12                           <---------PIF3(3)                  --------->WRKY45                           <---------O2                       ----------->HVH21                           --------->PIF3(3)              <-------TEIL                           --------->TGA1a              <---------ARR14(2)                         <---------ALFIN1              <---------DEAR3(2)         <---------PCF2           <------MYB83<-----------HVH21              ----------->ARR10        --------->ALFIN1           <------MYB46(1)<<<<<<<<<<AtbZIP1         ------>NtERF2          <---------ANAC58         ============================MYC_MYB       --------->DEAR3(1)      <---------ANAC58     --------->LBD16   <----------------PIF3(2)    <---------ANAC46        <---------ANAC46    <---------LBD16   ------->GAMYB<---------ARR14(2)<------NtERF2        <---------LBD16    <------- -----TOE1(3)         ===============MYC_MYB       <---------DEAR3(1)   <---------ARR14(2)  <-------- -----TOE2(3)        --------->MYB46(3)         --------->ANAC46        <---------ZAT14<---------ATHB51 ====================================bZIP_DOF   <---------DEAR3(1)  --------->LBD16    <---------ATHB12 --->DOF2<--------P--------->MYB52(1)          <---------LBD16--------->WRKY38(1)----------->TCP11(1)   ggttatccagggttggcaaaacaacggccacgtggtggttccagtcttctacggcgtcgattcgttgacccgagtttacgggtgggccaatagttggctg  5917400                         --------->YAB1                        <---------ATHB12                       ------>MYB83                       ------>MYB46(1)                      --------->WOX13(1)                     --------->MYB46(3)                   ------>NtERF2                  --------->RAP2.6(2)                 --------->MYB46(3)                ------>MYB46(1)                                                   --------->YAB1               --------->ANAC46                                                  <---------ATHB12               --------->ANAC58                                                --------->YAB1               --------->ANAC58                                               --------->ICU4   <------NtERF2------>MYB83    <---------ANAC46     <----------DOF2    <---------------AtSPL8  --------->RAP2.6(2)--------->AtMYB61            <-----------GT1       --------------->AtSPL8  ----------->GT1<---------MYB55(2)           <---------DAG2         --------->AHL20(2) --ANAC46    --------->MYB46(3)<-------TEIL   <----------DOF2      --------->ANAC58 -MYB46(3) <-----------GT1---------->DOF2  <-----------GT1         --------->ANAC58   gaggccgaaaaattaaccagccaccaatcaaagttcgtatacattatacttttttcttttgtcaaaaacaagtaaatgtactaatcatataaaccgctag  5917500  Previous    Next  AGI:  At5g17890.1    Description:  LIM domain-containing protein / disease resistance protein-related. similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G36140.1); similar to TTR1 (WRKY domain family protein 16), transcription factor [Arabidopsis thaliana] (TAIR:AT5G45050.2); similar to TTR1 (WRKY domain family protein 16), transcription factor [Arabidopsis thaliana] (TAIR:AT5G45050.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22922.1); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Zi Range:  from: 5916972    to: 5923357    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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