Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                       <-------GAMYB                                              -----                                    --------->LBD16                                             <----                                    ----------->GT1                                             <----              <----------DOF2      <---------ANAC46                                           -------             <---------DAG2      ------>NtERF2                                                <------          <-----------GT1    --------->ANAC46             ---------->DOF2                 <----------  <------ZmHOX2a(1)    --------->MYB46(3)          --------->ARR11(3)              ---------->ID1   agaaggagttgtttaccttttctcatccaacacgatgccggttaaaaatggaacatattgtaaagcttccttccattctttcttcgtcttcttgtcagta  5912700                         --------->LBD16                             --------->HSFB2a(2)       <---------ZAT2    --------->ANAC46                           --------->REM1(2)       --------->ZAT2   --------->LBD16                          <---------ANAC46       --------->At4g35610                             <---------bZIP60(2) ---->ZAT14             --------->HSFB2a(2)            <---------ANAC58 -----ZAT14             <---------HSFB2a(2)            <---------ANAC58 -----ZAT18--------------------->WRI1                  <---------ANAC46   --------->ATHB12 -->At4g35610          <---------LBD16              ----------->HVH21<---------HSFB2a(2)        <---- ---At4g35610--------->LBD16                     --------->ZAT6------->TEIL              <-------PIF5 -HVH21<---------At4g35610--------->LBD16   <----------DOF2 <----------DOF2              ------->PIF5   gacttcaccagctccctgaacttatccccgaagtctcccttcaattctttaacagtgacgggctgtaccttgtagaagattggaatcaccacgagctcct  5912800                                                                                            <--------                                                                                            ---------                                                                                            <--------                                                                                        --------->TOE1(1)                                                                                       ------>ZmHOX2a(1)                                     --------->MYB46(3)    <---------ANAC46            --------->HSFB2a(2)               XXXXXXXXXXXXXXXXXXXX>MIR4239                --------->TOE1(2)           <---------HSFB2a(2)         <----------DOF2   <---------At4g35610           ------->TEIL               <------ZmHOX2a(2)      <---------MYB52(1)   <---------ZAT2               <---------CCA1(2)          --------->ARR14(2)    <---------ANAC58      --------->ANAC58           --------->LBD16               <---------ARR14(2)    <---------ANAC58  --------->ANAC46              <---------ANAC58            <---------ZAT18   --------------->AtSPL8 --------->ANAC58          <---------ANAC46       <---------ANAC58 --------- ------DOF2  <----------DOF2    ------>ZmHOX2a(1)   <---------ANAC58       <---------ANAC58------->TEIL   tttgttccgttctttctttcatcttcgcaagctccttcaaacaccattttgactccgtgtaccttggagagaaaatggctagcgcgatcctcgaaccttc  5912900                --------->ANAC58                --------->ANAC58      --------->HSFB2a(2)                                                                       -----      <---------HSFB2a(2)                                                   <-----------GT1    ------  <----------DOF2                       ----------->RAV1(2)            <----------DOF2   <---------At4g35610 -HSFB2a(1)     --------->ANAC46        <---------At4g35610           --------------->AGL15    ------ >HSFC1(2)   <---------ZAT18            --------->At4g35610          ----------------->AGL3   <------ -HSFC1(2)   <---------ZAT14    <---------CCA1(2)                 <----------DOF2        --------->At4g35610 >HSFB2a(1)  --------->ZAT14  <---------ALFIN1                 ------>ZmHOX2a(2)       <-----------RAV1(2)   tattctttcgagcagaacactcaactcttggcccatctcttcatctgtgtctatgaaggcattgatccctttcctttttaagcccttctccagatgactg  5913000          --------->LBD16          <---------ZAT18        <---------TOE2(3)         <---------ANAC46      --------->AHL20(2)               --------->SPL7        <---------LBD16        <---------AHL20(2)            --------->DEAR3(1)        <---------ANAC58     <---------ANAC58   --------->ANAC58                   <---------At5g28300      <------ZmHOX2a(1)     <---------ANAC58   --------->ANAC46           <---------ANAC46            --------->ALFIN1   --------->ARR11(3)   --------->ANAC58           <---------ANAC58        <-----------RAV1(2)   <---------ARR11(3)  <---------LBD16             <---------ANAC58<---------MYB52(1)  <---------ANAC58 ---->MYB52(1)         --------->LBD16        ------>ZmHOX2a(2)<---------MYB52(1) --------->ALFIN1 ----->HVH21         <---------REM1(2)      --------->ARR11(3)--------->ORA47(1) <------ZmHOX2a(1) ----->TGA1          <---------ZAT14        <---------ARR11(3)<---------SPL7  <------ZmHOX2a(1) ---WOX13(1)       --------->ANAC46   --------->ZAT6 --------->ALFIN1    --------->ANAC46   acgaagttcttgcgcagttcgactccacggaaattaatgaacacttgatcttggggtgtctcaccgtccgttttcacccaggaggaggagcttgtcattt  5913100            <---------ZAT18            --------->ZAT18            --------->ZAT14                                                          <---------WRKY12            <---------ZAT14                   <---------ZAT14             ---------->DOF2      <----------DOF2           --------->ANAC58                       --------->TOE2(3)      <------     <---------ANAC58           --------->ANAC58            <----------DOF2   <------ZmHOX2a(1) *TSS<---------ANAC58    ---------->DOF2      --------->ZAT14    <------ZmHOX2a(1)  ------------>CBF   ctatctggctttagtgctctcaaaactgaaagactcgaaattagcctctgttctgccatcgactttaggactatctcaaaggataagtcaatggaacttt  5913200                                                                                                   <-                                                                                                   <-                 <-----------GT1                  --------->AHL20(2)                            <----              <---------ICU4             <---------ARR11(3)                                  --------              --------->AHL20(2)         --------->ARR11(3)                             --------->ANAC58      <---------ATHB12        <----------ID1 --------->AHL20(2)                         --------->ANAC58  --------->AHL20(2)       ---------->DOF2   <---------AHL20(2) ---------->DOF2         --------->ANAC46 ----DOF2     <---------AHL20(2)     ---------->DOF2      --------->YAB1                --------->ANAC55(1)   caaattcaataactaattttttctgtatcaaaagaacaaaaaagattttaaatgaaatattgataacaaagtaatagttcatggtattacaagtaactat  5913300    <------MYB46(1)               --------->ANAC58    ----------->GT1               --------->ANAC58                 <---------YAB1    <------MYB83                --------->ZAT6                   --------->YAB1 --------TOE2(3)       --------->ARR11(3)                       <---------YAB1 --------YAB1          <---------ARR11(3)                     --------->YAB1 -----YAB1        <-----------GT1 --------->ANAC46            <--------HAHB4                <-------- ->ICU4        <---------ICU4 <-----------GT1                <---------YAB1   <----------DOF2      <-   tatggatggtagtatgctaattacaaatcttttaacactcaagtttttagtaaacaatacagtattattatagttctaatcttttagtggctattttttt  5913400           --------->MYB52(1)          <---------ARR14(2)                                                    --------->AHL20(2)        --------->LBD16                                                         <---------ATHB51      ----------------->AG                       --------->YAB1                 <---------AHL20(2)      ==========================================================MADS_MADS ----------->GT1      ----------------->AGL1                    <---------------AGL15     <------ZmHOX2a(1)  <----------DOF2                               --------------->AGL15    ----------->GT1 -AHL20(2)--------->ARR14(2)   <---------At4g35610                    --------->ARR14(2) ----------GT1                 --------->At4g35610 <---------YAB1 <---------LBD16   ttttcttttccgaaaacggatgaatagtgagacagaagacaatttcattactcataatagaaaacaactcgggataggataaataattctcaaatttttg  5913500                 --------->LBD16                          ----------->GT1               ------>ZmHOX2a(2)                          <---------ANAC58              <------ZmHOX2a(2)                           <---------ANAC58             <---------ARR14(2)               <----------DOF2             --------->ARR14(2)            <-----------GT1<---------ANAC46           --------->AHL20(2)      ===============HOX2a_HOX2a------>MYB83  <---------DAG2                         <---------AHL20(2)      ================HOX2a_HOX2a<---------ATHB12    <---------bZIP60(2)   <---------At5g28300      -      ------>ZmHOX2a(1)         ------>MYB46(1)   ----------->HVH21       <-----------GT1           <   ttaatctccttctacgatccgagagaccgagaccaatctttgttaatactttatgacatggcgtaaaacattgtttttaccgaaaaattaaactagagaa  5913600  Previous    Next  AGI:  At5g17880.1    Description:  CSA1 (CONSTITUTIVE SHADE-AVOIDANCE1); ATP binding / protein binding / transmembrane receptor. similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT3G51570.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G36150.1); similar to RPS4 (RESISTANT TO P. SYRINGAE 4) [Arabidopsis thaliana] (TAIR:AT5G45250.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64653.1); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Gur Range:  from: 5908876    to: 5913101    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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