Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         --------->bZIP60(2)       --------->ANAC55(2)       --------->ANAC55(1)       --------->ANAC46       --------->O2       --------->ANAC58     <---------ALFIN1    <---------REM1(2)                                   --------->HSFC1(2)  --------->ANAC46        <-----------GT1          --------->HSFB2a(2)                       ------>ZmHOX2a(1) ------>ZmHOX2a(1)     --------->GLK1(1)           <---------HSFB2a(2)                ==============HOX2a_HOX2a ------DOF2          <------ZmHOX2a(1)         <---------ANAC46                       ------>ZmHOX2a(2) ----ANAC58--------->ANAC58           <----------DOF2   <---------HSFC1(2)           <------ZmHOX2a(2) ----ANAC58--------->ANAC58 --------->MYB46(3) <---------ANAC58                      ===============HOX2a_HOX2a -DOF2 --------->ANAC58<---------GLK1(1)       <---------ANAC58                  <---------TOE2(3)   ttcctctccacgtaagctatataggatttcaccaccaagtctttgtgtttcttgtcgaagcttagctcgaagcattgccaattgacgatcgcttcctctg  5859600                                                      <---------At4g35610                                                      --------->At4g35610                                                 --------->O2                                                 ==========================bZIP_DOF             ==============================================MYC_MYB             ------->GAMYB                       <---------O2         <---------MYB55(2)                      --------->TGA1a         --------->REM1(1)                       <---------TGA1a         --------->MYB46(3)                    <---------ALFIN1        ------>MYB46(1)          --------------------->WRI1                                        <-        ------>MYB83  <---------ANAC58       ------>NtERF2                                        <--        -------->P    <---------ANAC58      --------->ANAC46    <----------DOF2      --------->AtMYB61   tctcttcacctacaaccgtggttttcttgtttctgccttctaaataccgccacttgagctcaatgcctttatagacatcggagacaacctctccttggct  5859700           <---------ANAC58           <---------ANAC58          <---------TOE2(3)         <---------DOF5.7(2)        --------->WRKY12                                              <---------ANAC58    -----------      <---------At4g35610                                             <---------ANAC58  <---------ZAT2      --------->At4g35610                             ------->TEIL    <---------ANAC46  <---------At4g35610 --------->ALFIN1                        ------>ZmHOX2a(1)     <---------CCA1(2)        --------->ZAT2 <---------REM1(1)  <---------ZAT6      --------->TOE2(3)    <---------ANAC58  --------->CCA1(2)    - --------ANAC46    <---------YAB1       --------->TOE1(3)    <---------ANAC58--------->CCA1(2)  ----- -------AtMYB61 <---------YAB1        --------->ICU4<-------TEIL--------->ARR11(3)      --------->At4g35610   gaggtgtaagttgacgttcttattgttagggtctctagtcatccttagcttcgatgcatcggggcttatcttgcttgagagataagcttgagctgacaaa  5859800                                                                                         --------->ANAC58                                                                                         --------->ANAC58                                                <-----------HVH21                       <------NtERF2                                             <---------ICU4                            ------>NtERF2                                         --------->WRKY38(1)                          --------->RAP2.3(3)                   <---------ARR14(2)    --------->WRKY12                             ----------->HVH21                  --------->GLK1(1)     <---------MYB52(1)     <---------ANAC58       --------->DEAR3(1)            <---------ANAC58           <-------GAMYB           <---------ANAC58      --------->RAP2.3(1) >HVH21     <---------ANAC58   <---------ATHB12--------->bZIP60(1)                   --------->DEAR3(2) -------->ARR11(3)<---------GLK1(1)   <---------ANAC46--------->YAB1                <---------At4g35610 ----->DOF2 <---------ANAC46 ------>ZmHOX2a(1) <---------bZIP60(1)                  --------->At4g35610   aagagctcgttttttcttggaaatcccgttcctatcagtcccgttgatcatgtcattgatcacaagcgtgagagtcgatgaacgagagccgacgaaagac  5859900                                         <---------ANAC58                ------->TEIL                                         <---------ANAC58                <---------ARR14(2)                                         <---------ANAC46          <---------YAB1     <---------ANAC46                              <---------ANAC46                   <---------ICU4       --------->ANAC58                              <---------ANAC58    --------->ATHB12 --------->ICU4     --------->ANAC58                              <---------ANAC58    <---------ICU4<---------YAB1     ----------->TGA1                              <---------MYB46(3)  -------->ATHB1--------->ICU4     ----------->HVH21                            <-----------HVH21    <---------ATHB12--------->YAB1<---------MYB52(1)                        --------->ARR14(2) <---------ANAC46   <---------ICU4 --------->ANAC46                  --------->ARR14(2)  --------->YAB1          --------->YAB1<---------LBD16 <---------REM1(1)<---------ARR14(2) --------->ICU4   <---------MYB46(3) --------->ARR14(2)   ttgatgtaagagaaaacgaagttctgtatcggtcgtggaattatcgtgtgaatcattggtttgatcatcatgatgtatcccgctagtgacgcataggtag  5860000                         <----------DOF2                       <------ZmHOX2a(2)                      --------->ARR14(3)                      --------->ARR14(2)                      <---------ARR14(2)                      <---------ARR11(3)                      <---------ARR14(3)                      --------->ARR11(3)                     <---------GLK1(1)                               <----------DOF2                     --------->GLK1(1)                           <-----------------AGL1                    ----------->ARR10                        <------MYB46(1)            <------ZmHOX2a(1)                                <------MYB83                 <---------AHL20(2)            ===================HOX2a_HOX2a                  <---------AtMYB61     <---------ANAC46            ==================HOX2a_HOX2a                   --------->MYB59       ----------->GT1         <-----------RAV1(2)                           <---------TOE1(3)      <------------CBF    <-----------RAV1(1)<---------RVE1(1)               <---------TOE2(3) ----------->GT1 --------->AHL20(2)    =================RAV------>ZmHOX2a(2)         <----------DOF2<-----------------AG   <---------YAB1   agaacattgttgcaggagaagggagatctttagagaacaccattgttttcgacttttagggtttggtttctcttttggtaaattgggtttattatataga  5860100                                                                                            ------->TEIL                                                                                         <---------ANAC58                                                                                         <---------ANAC58                                                                                         --------->ANAC58                                                                                         --------->ANAC58                                                                                         --------->ANAC55(2)                                                                                         <---------ANAC55(2)                                           <---------ICU4                           <---------------AtSPL3                                           --------->ATHB12                        ---------->DOF2                                          <---------YAB1            <---------MYB52(1)  <-------TEIL            <---------ARR11(3)     <----------DOF2  ----------->RAV1(1)         --------->ANAC58-----    <------------CBF     <----------DOF2--------->YAB1 ---------->DOF2          --------->ANAC58-----   gatttgtattgggagataattctctctctttattcatctttttcatcatttgggccacaaaggccagcccattaggctaataacgcaaagtacgtatcaa  5860200                    --------->YAB1                   <-------TEIL                --------->KAN4(1)                --------->GLK1(1)               <---------ARR11(3)               --------->ARR11(3)           --------->CCA1(2)               <---------ARR14(2)           --------->GLK1(1)    --------->ANAC46<---------ICU4         --------->ARR11(3)    --------->ANAC55(2)   --------------->AGL15            <---------ARR11(3)                 -------    <---------ANAC55(2)<-----------GT1     <---------ARR11(3)  <-----------GT1                ------- ---->ANAC58   <---------KAN4(2)    ---------->DOF2        --------->ARR11(3)            --------->ANAC58 ---->ANAC58   --------->ARR14(2)  --------->AHL20(2)  ---------->DOF2    ---------->DOF2--------->ANAC58   gctattacgcagtttgggatattcattaccacataaataaaagaagatatcaacacttaaagattttactcttctcaaaagtctctgtaacaaggcaaga  5860300                                                                             <---------------AtSPL3                                                                             <---------------AtSPL8                                                                             --------------->AtSPL8                                         --------->AHL20(2)                  --------------->AtSPL3                                       <---------------AGL15             <------MYB46(1)                                       <----------DOF2                   <------MYB83                                       --------------->AGL15          <-------GAMYB                                      --------->TOE2(3)              --------->MYB111(1)                                      ----------------->AGL3         <---------MYB46(3)      --------->ANAC46       <---------TOE1(2)                       --------->MYB46(2)    <---------ALFIN1       <----------DOF2          ----------->GT1  --------->MYB55(2)   --------->ZAT14    <---------AHL20(2) <-----------TBP             --------->MYB52(2)---------->DOF2 -->ANAC58          <------------------------ANAC81 <---------ANAC46 --------->MYB111(2) -->ANAC58      <----------DOF2       <-----------------AGL3        <--------P   ------->TEIL   -----   gactctccactctatatgctttattttttctttggttcttcctttatataggtagagtataacatacttggtagttggtaatgtacctccaaagactatc  5860400                                         <-----------------AGL3                                         <-----------------AGL2                               -------                                       --------->ARR11(3)                                     <------           <---------ANAC58   --------->DAG2                                                  <------           <---------ANAC58  ---------->DOF2                                                  -------  --------->AHL20(1)  <------ZmHOX2a(1)<---------ARR11(3)                                   <--------  --------->ARR11(3) ----------->GT1   <---------ARR11(1)                                 --------->ANAC58  <---------AHL20(1)<---------TOE2(3)  --------->ARR14(2)                                 --------->ANAC46  <---------ARR11(3)<---------TOE1(3)  <---------ARR14(2)              ------->GAMYB      --------->ANAC58 ---->TOE2(3)   <----------DOF2       <---------CCA1(2)      <---------MYB46(3) --------->AHL20(2) <-   tcaatatatagtttcttactttaaggaaaaataaagttccatatctcttaatgggtcttacaatggttcacaaccctagaaaataaacatacaagaaatt  5860500  Previous    Next  AGI:  At5g17750.1    Description:  AAA-type ATPase family protein. similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT5G17740.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46634.1); contains InterPro domain AAA+ ATPase, core; (InterPro:IPR003593); contains InterPro domain AAA ATPase, core; (InterPro:IPR003959) Range:  from: 5858697    to: 5860043    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g17760.1    Description:  AAA-type ATPase family protein. similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT5G17740.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46634.1); contains InterPro domain AAA+ ATPase, core; (InterPro:IPR003593); contains InterPro domain AAA ATPase, core; (InterPro:IPR003959) Range:  from: 5860423    to: 5862424    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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