Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           <---------ANAC58         <---------ANAC58      <------MYB83      <------MYB46(1)                                                                          <-----    <--------P                                                                            --------->LBD16  <------MYB46(1)                                                                        --------->ANAC46  <------MYB83                                                                           --------->HSFB2a(2)  <---------MYB46(3)                                                                     --------->ANAC58 <---------AtMYB61              <---------ICU4                                           --------->ANAC58 --------P                      --------->YAB1<---------ALFIN1      <---------GLK1(1)    --------->ANAC55(2) -------REM1(1)           <----------DOF2<----------DOF2            --------->GLK1(1)   <---------LBD16 -------ZAT6--------->ZAT18  --------->YAB1<-----------GT1 <------ZmHOX2a(1)          <-----------GT1   gtgtaggttgggagtgccatagctactgctttgatcatcacttctttaccaccttgagacaggaatttggaactccaagagttgattttttccgcaactt  5850100                                                                          <------NtERF2                                                                         <---------RAP2.6(3)                                                                         ------>NtERF2                                                                        --------->RAP2.3(2)                                                                        --------->ATERF1(2)                                                                        --------->DEAR3(1)                                                                        --------->RAP2.3(3)                                                                        --------->RAP2.6(2)                                                                       --------->ORA47(2)                                                                       <---------RAP2.6(2)                                              --------->HSFB2a(2)      --------->RAP2.3(1)               <---------TOE2(3)         --------->HSFC1(2)            --------->ATERF1(1)               <---------TOE1(3)      ---------->DOF2                 <---------ATERF1(1)         <---------ARR11(3)          --------->YAB1                  --------->ALFIN1               <         --------->ARR11(3)         <---------ATHB12      <---------ARR11(3)                     ====         --------->GLK1(2)     <------ZmHOX2a(2)          --------->ARR11(3)                     ----    <---------HSFB2a(2)  --------->YAB1  <---------HSFC1(2)--------->CCA1(2)                   ------    --------->HSFB2a(2)  --------->TOE2(3) --------->GLK1(2)  <-----------GT1  <----------DOF2 <----- -----DOF2 --------->TOE2(3)  --------->AGP1  <---------HSFB2a(2)   <-----------HVH21         -------   tctcttccaaaaatcttaaggtttcaatcttagatccaatgaaagcttctgggagaccgagatataaccctgtgccgccttctttagtgattccagtgat  5850200                                                               <---------At4g35610                                                               --------->At4g35610                                                              <-----------ARR10                                                          --------->HSFC1(1)    <---------ARR14(2) ----------DOF2                                  <---------ANAC58               --------->ARR14(2) ====================HOX2a_HOX2a       <------NtERF2      <---------HSFC1(1)    <---------GLK1(2) -->ZmHOX2a(2)                        --------->RAP2.6(2) <---------HSFB2a(2) --------->ANAC58 --->ARR11(3)                     <---------RAP2.6(2)     --------->HSFB2a(2) --------->ANAC58 ----ARR11(3)                 <----------DOF2    <---------ANAC58     <----------DOF2            ---- -->ZAT14     ------>ZmHOX2a(1) <-----------RAV1(1) --------->ATHB12 <---------DAG2              ----   ctctttgatcaaattcctagtctctgtttcaactttgtggccgaaaacaatgcttgatttcgagaagctcaccttttggccagaaactctactatattcc  5850300                                                                             <---------ANAC58         <---------WOX13(1)                                                  <---------ANAC58       --------->ATHB12                                                     <-------TEIL      <---------YAB1                                                       --------->ALFIN1        <-   --------->GLK1(2)                                                      --------->TOE1(2)        <-   <---------ARR14(2)                                                   --------->DAG2      <--------   --------->ARR14(2)                                                 ---------->DOF2       <--------  <---------GLK1(2)                                               --------->ANAC58        <---------At4g35610 ----->LBD16                                                      --------->ANAC58        --------->At4g35610 -->ZmHOX2a(1)                          --------->AtLEC2    --------->At4g35610   --------->GLK1(2)--   tgaagaatctgattgatcacatcaacttcttgtttctcagccttgcaaaaaaacagtgtatcatcggcaaacaaaaggtgcgagactcttggagctgttg  5850400                                      ------>NtERF2                                     <---------ALFIN1                                     --------->RAP2.6(2)                                    --------->MYB46(3)        <---------GLK1(1)          <---------At4g35610 --------At4g35610                 --------->At4g35610                                             <- --------ZAT2                  <-----------HVH21                                       <------------- -MYB46(3)     <---------MYB52(1) --------->ANAC46                     --------->AHL20(2)   --------- ---RAV1(1)  ------>ZmHOX2a(1)<----------DOF2                    <---------ZAT18  ---------->DOF2---- ------->At4g35610       <-----------GT1   ---------->DOF2<------ZmHOX2a(1)--------->AHL20(2)--------   cagctacttgaactcctgttattctattttctctttcagccaccttgaagctatttgccaggacttctgcacataaaataaacacaaagggcgataaagt  5850500                                                  <-------TEIL                                      --------->ANAC58                                      <---------ANAC55(2)                                      --------->ANAC58      ------------>CBF                --------->ANAC55(2)                           ---------->DOF2   <---------WOX13(1)               --------->CCA1(2)                        <-----------HVH21   *TSS                            --------->ARR14(2)                        <-----------TGA1 --------WOX13(1)                  --------->ARR11(1)                   <-----------GT1 --------WRI1                      <---------ARR14(2)                 <---------AHL20(2) ->DOF2                    <-------GAMYB  --------->ANAC58         --------->AHL20(2)         ------- ----->ATHB12             ----------->GT1 --------->ANAC58      --------->TOE2(3)--------->AtLEC2   - ->DAG2                   <---------MYB46(3)   ----------->TBP  --------->YAB1   <---------YAB1     <   cattgatagacaatttagaatggcaagatggttaatggatacgcactctatatacatcgactacaacgataatttaactcgtcatgaaaaggaatcagca  5850600                                                               <---------ANAC46                                                           <-------MYC4                                                           <-------MYC3                                                           ------->PIF4                                                           ------->MYC4                                                           ------->MYC3                                                           <-------MYC2                                                           ------->PIF5                                                           <-------PIF5                                                           ------->MYC2                                                           <-------PIF4                                                          <---------ANAC55(2)                                                          --------->ANAC55(2)                                                          <---------TGA1a                                                          --------->ANAC58             --------->ATHB12 ======================================bZIP_DOF             ----------->GT1  <----------DOF2             --------->TGA1a -------->HAHB4            ---------->ID1                 --------->ANAC46             <------------- --------->ATHB12--------->ATHB12                         ===========================bZIP_DOF   ----- -->At4g35610<---------MYB46(3)                           --------->ANAC58             -------------- -------->ICU4 <---------WOX13(1)                   --------->At4g35610             --------->AHL20(2) ---------YAB1 <--------P <-----------GT1       --------->MYB52(1)        <----------DOF2       <----   aaatgattcaaagaatggttgatttgtttttcctttagcaatgtctaaacaaacagttgcacgtgatgtacaaatgcttttttcgataaattgtacattt  5850700                                                                                                    -                                                                                                    -                                                                                                    -                                                                                                    -                                                                                                    <                                                                                                <----                                                                           <------MYB46(1)     <-----                                                       <----------DOF2     <------MYB83 --------->WOX13(1) --AtSPL8    ----------->GT1       ------>MYB83    <------MYB83           <---------AtMYB61--------->YAB1 ---->AHL20(2)     ---------->DOF2 ------>MYB46(1) <------MYB46(1)       <--------P  <--------------- ->AtSPL8--------->AHL20(2)      <---------MYB59  <---------AtMYB61    <-----------RAV1(1)<---------ATHB12 -----AHL20(2)----------->GT1 <---------WRKY18(1) --------->MYB59    <---------ANAC46----------------   tattcaaaaaaaaaaatgtttaaaagaattcttgacctaatttcaacttggtttggtctttggacttctcttcgtgttggtcttatggcccaatcaggtt  5850800     <------MYB46(1)   <--------P <------MYB83 <------MYB46(1) -------->MYB111(2) -------->MYB111(1)                                                                 <-----------GT1 -------->MYB46(2)                                                                 --------->AHL20(2) -------->MYB59                                              --------->ARR14(2) --------->YAB1 ---------MYB46(3)                 <---------RVE1(1)       <---------YAB1      <---------YAB1 -----MYB46(3)          <---------AHL20(2)               <-----------GT1       <---------AHL20(2) ---P<------MYB83       --------->AHL20(2)               --------->YAB1      --------->YAB1 --AGL1             --------->AHL20(2)                  <---------ATHB12 --------->ATHB12 ->AGL1             <---------AHL20(2)           --------->WOX13(1)    <---------WOX13(1)  <---------   gtttggtaggcttctattgtatttatttatatatgtgatattttctataatccatcaaatcacgattcgattgaatgatttataattaactttcaactct  5850900                                                                                                    <                                                                                                <----            <---------TOE2(3)                                                                   <----            <---------YAB1                                                                      -----      <---------AHL20(2)                                                                       ------     --------->AHL20(1)                               --------->GLK1(2)      --------------->AGL15  -     <---------AHL20(1)                          ----------->GT1             <---------------AGL15 --     --------->AHL20(2)                        ---------->DOF2              ----------------->AGL2 <-     <---------AHL20(2)                   --------->YAB1                    ----------------->AGL3 -- <---------AHL20(2) <----------DOF2       --------->AHL20(2) --------->GLK1(2)                 <----- --GT1--------->AHL20(2)                ------------------------>ANAC81   <-----------GT1    --------   tcttaaatttaattaagataaacttttaagacccaaaacaacaattaaaaaaagaaaatccaaattctatcagttttcaccaatattagaatcactcata  5851000  Previous    Next  AGI:  At5g17725.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 1.9e-07 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element) Range:  from: 5848298    to: 5850503    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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