Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                 <-----                                                                                               <-----                                                                                               <-----                                                                                               <-----                                                     --------->YAB1                        <---------                                                     <---------ICU4                     --------->GLK1(2)                                                    --------->ICU4                     <---------ARR14(2)                      <----------DOF2               <---------ATHB12                   <---------GLK1(2)          <---------ARR14(2)                     <---------AHL20(2)                  ----------->ARR10          ------->TEIL<---------DAG2            --------->AHL20(2)               <---------LBD16 -------->MYB46(3) <---------ALFIN1          --------->ATHB12                   <---------ANAC58 --->YAB1 --------->ARR14(2)               <---------WOX13(1)                   <---------ANAC46 >WOX13(1)--------->GLK1(2)              --------->ATHB12    --------->ATHB12   <---------ANAC58 ----   gaaccatcaacgaatccatctccacttttatacttataaacagtgattgatttaatcatggactcattgagtccatctccattcgtggagattctttgcg  5800800                                                                 <---------ANAC46                                                                <------NtERF2                                                              <---------DEAR3(1)                                                              <---------ANAC46                                                              --------->ALFIN1                                                             --------->ATERF1(1)                                                            <---------MYB46(3)                                                           <---------AtMYB61                                                           --------->ALFIN1                        --                                                         <---------ANAC46                          --                                                         <------MYB46(1)                         ----    ---------->DOF2          --------->MYB59            --------->MYB46(2)                       ----  <------ZmHOX2a(1)          <---------TOE2(3)          --------->MYB111(2)                      <--- ----ANAC58                  <---------TOE1(3)          <---------AtMYB61                  --------->ZAT18 ----ANAC46             --------->ATHB12                --------->MYB55(2)                 <---------ZAT14 ----ANAC58            <---------YAB1                   --------->MYB111(1)                --------->ZAT14 ----AtLEC2            --------->ICU4                   <---------MYB46(3)        <---------At4g35610 -DOF2              <---------MYB52(1)            <------ZmHOX2a(1) ----------->HVH21     --------->ALFIN1 ----->ALFIN1  <---------ALFIN1         --------->GLK1(2)<------MYB83             --------->At4g35610   tggaggaaaagaaaccctcaccgttatgatttaggttaagagtttctgaagaggaggtttggtggtggcgatgacagtattttgagatgagagtgtagta  5800900             <---------ZAT14      <------ZmHOX2a(1)  <---------bZIP60(2)                                                 <------ZmHOX2a(1)  <---------ANAC46        --------->CCA1(2)                         --------->ALFIN1          ------- --------->TGA1          --------->ARR11(3)                      --------->ALFIN1  <---------DEAR3(1) --------->HVH21       <---------TOE2(3)                --------->GLK1(2)<------ZmHOX2a(1)<------ZmHOX2a(1) ----->ZAT2  --------->ZAT18                            <---------ARR14(2)  <---------HSFB2a(1) ----->At4g35610       <---------YAB1             <------ZmHOX2a(1)<------ZmHOX2a(1) <------NtERF2 ------At4g35610  <---------MYB46(3)         <------ZmHOX2a(1)  <------ZmHOX2a(1) <------NtERF2   gctgacgaggatgagagcgctggttaagataccgatgagagcgatgaggagaggagagaaactggaggaggaggaggaagagtcgtcgtcgaggaagaaa  5801000                                                                      <--------ATHB1                                                                      -------->ATHB1                                                                      --------->YAB1                                                                      --------->ATHB12                                                                      <---------ICU4                                                                     <---------YAB1                      --------->ANAC55(2)                            <---------ATHB12                      <------MYB83                        <---------ANAC58                      <------MYB46(1)                     <---------ANAC58                ----------->ARR10                      --------->GLK1(2)        --------->ALFIN1                              <---------GLK1(2)       <------ZmHOX2a(1)                              <---------ARR14(2)     --------->ALFIN1 ----------->GT1                <---------At4g35610    <------ZmHOX2a(1) <---------ANAC55(2)     <---------REM1(1)      --------->ICU4  --------->ALFIN1   --------->MYB59 <------ZmHOX2a(1)--------->ARR14(2)        ------->TEIL <------ZmHOX2a(1)   --------->MYB46(2)       <-----------RAV1(1)  --------->WOX13(1) --->DOF2 <------ZmHOX2a(1)--------->ZAT6    --------->ARR11(3)  <---------KAN4(2)                 <<   gaaggaggaggaggagggaagattaggtaacaccattgaggacagtagatgttgcagattccttgagaacaatcattgtatgaatcgtatggtgaccatg  5801100                       <------MYB46(1)                       <------MYB83           <---------DDF1          --------->ETT(2)          <---------ETT(2)                                                                          <         ---------->ID1<---------MYB46(3)                                                           <  <---------TOE1(3)  <---------WOX13(1)                    ---------->DOF2 >>>>>>>>>TBF1            <  <---------TOE2(3)--------->ATHB12             <---------HSFB2a(2)    <------ZmHOX2a(1)         <--- <<<<<<<MYB98     <---------YAB1           <-----------RAV1(1)   ---------->DOF2             <------ZmHOX2a(1)   ggttagggtttgtcgacattttgattggttctcaatggtgtttttgtgttgcagaaacagagaaagagaaagaggaagaagaagagggagagagaggaga  5801200                                                                                                   <-                                                                                                   <-                                                                                                   <-                                                                                              <------                                                                                             --------                                                                                            ---------                                                                                     xxxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                          --------->AHL20(2)---------           <-----------HVH21                                              <---------ICU4 <---------ARR14(2)        <---------ANAC46                                              --------->AHL20(2) --------->ARR14(2)        <---------bZIP60(2)                                           <---------AHL20(2) xxxxxxxxxxxx      <---------ZAT14                                              <----------DOF2  <xxxxxxxxxxxxxxxx   ----------->GT1                                              ------->TEIL        xxxxxxxxxxxxxxxxx   <---------ANAC46                           *TSS           ----------->GT1        xxxxxxxxxxxxxxxxx  <---------AtMYB61                          <----------DOF2 <---------ANAC55(2)    xxxxxxxxxxxxxxxxx  --------->ALFIN1                  <----------DOF2          --------->ANAC55(2)   xxxxxxxxxxxxxxxxxx ---------ANAC46                  <---------YAB1           --------->CCA1(2)      <xxxxxxxxxxxxxxxxxx ---------ANAC58                <---------CCA1(2)         --------->ARR11(3)      xxxxxxxxxxxxxxxxxxx ---------ANAC58               ------>ZmHOX2a(1)        <---------TOE2(3) <---------AHL20(2)--------- ------AtMYB61        <----------DOF2      <----------DOF2<---------ARR11(3) --------->ZAT6<---------LBD16   tggtgtggtgaagtgtcactctctctttctctccttatctttgggctctttgtgatttaagatatgtaacttttaattaatactagatgagtacccgcac  5801300           <---------ANAC58           <---------ANAC55(2)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    --------->LBD16   <---------ANAC58   <---------ANAC58   <---------ANAC46  <---------LBD16 --------->ALFIN1 --------ANAC46 --------ANAC58 --------ANAC58 ---ALFIN1 <---------ANAC46 ->LBD16   <---------ANAC55(1) >ANAC58   <---------ANAC58                <---------ARR11(3) >smallRNA(i)   <-----------GT1            --------->ARR11(3) xxxxxxsmallRNA(le3)                      --------->CCA1(1) >ANAC46   --------->ANAC55(2)            --------->RVE1(1) xxxx>smallRNA(i) <---------YAB1       <---------AHL20(2)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxsmallRNA(si3)               <---------AHL20(2)           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxx>smallRNA(i2)           --------->AHL20(1)              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxx>smallRNA(le3)          <---------AHL20(2)             --------->DAG2 xxxxxx>smallRNA(si3)         --------->AHL20(2)            ---------->DOF2                       <-- xxxxx>smallRNA(i2)          --------->AHL20(2)          ----------->GT1                     <------- xxxxxsmallRNA(le3)          <---------AHL20(2)        ---------->DOF2                --------->TOE2(3) xxxx>smallRNA(fl3)    <-----------GT1--------->AHL20(2)--------->DAG2               --------->YAB1 < >ANAC58  <---------TOE2(3)  <---------AHL20(1)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->ICU4   tacgtgcgggtttacgtattactatttacaaattattttatataatatctgttcatataaagtaaagttgaatgcatcagtattgaaacataaatatgat  5801400                                   <---------At4g35610                                   --------->At4g35610             ---------->DOF2    <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <---------YAB1     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         ------->TEIL   <---------AHL20(2) -------AHL20(2)        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)       <---------YAB1 <---------GLK1(2) --YAB1 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   ------->TEIL <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ---------YAB1        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   ttaaaattgtttttgaaaagtccaactatattagttcatctgaaaaacgaatgtacttgagttgtttttttattgttgttttagattctcagtttttttt  5801500                                                                                                    <                                                                                                    <                                             <---------DEAR3(1)                  --------->AHL20(2) x                                        <---------YAB1           --------->AHL20(2)               <xx                                    <---------GLK1(2)            <---------AHL20(2)            ------                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)        --------->ZAT6       <xxxxx                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      --------->AHL20(1)            <xxxxxx                    <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <---------AHL20(1)            <------            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)               <---------AHL20(2)    <-----------GT1    <---------AHL20(2)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)      <-----------GT1     xxxxxxxxx    --------->AHL20(2)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)--------->AHL20(2)  xxxxxxxxxxxxxxxxx   ttgaatttatatatccttgtttttttgttatatgtatagattatgagacggtggaattttagaaaatttattttttacactaaaaatataacatgtcttt  5801600                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                          xxxxxxxx        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                xxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                     xxxxxxxxxxx <<<<<<<<GT-1            <-----------GT1                                                 <---------ANAC55(1) -----------GT1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                     <---------ANAC55(2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                    <---------ANAC58 xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                             --------->TOE2(3) --->ICU4       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                       --------->YAB1--------->ANAC55(2) xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                        --------->YAB1   <---------ANAC46 xxxxxxxxxxxxxxxxxsmallRNA(fl3)             --------->GLK1(2)    --------->ARR11(3)     <---------TOE2(3) ----DOF2    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------ANAC58 xxxxxxxxxxxxx>smallRNA(le3)--------->YAB1  <---------YAB1       <---------ARR11(3)    <-----------GT1 xxxx>smallRNA(si3)<---------AHL20(2)    <---------ARR11(3) xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxx   attaaccatgtctctgcatattcaatttaagcatattcaacttgatattcttggaaagtttagttaagttcttgttataatcttatattttacgtattag  5801700  Previous    Next  AGI:  At5g17600.1    Description:  zinc finger (C3HC4-type RING finger) family protein. Identical to Probable RING-H2 finger protein ATL5G (ATL5G) [Arabidopsis Thaliana] (GB:Q9LF64); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G03550.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63399.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 5799907    to: 5801246    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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