Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                           --------->WOX13(1)                      --------->ANAC58                      --------->ANAC58                                                     --------->At5g28300                     --------->DAG2                                      <---------At4g35610                    ---------->DOF2           --------->ARR11(3)         --------->At4g35610  -------                <---------HSFB2a(2)           <---------ARR11(3)       --------->YAB1   <---------ZAT14             --------->GLK1(2)              --------->MYB59       <----------DOF2       --------->ZAT14            <---------GLK1(2)           <---------ZAT6 --------->At4g35610         <---------GLK1(2)   ccttcttctctatagattctggtaaagcaattacccaaaccagtgtaaggtcttatgagatgtccagtctttatcatctccccttgattctgcagtaaaa  5730000                                                       --------->ANAC46                                                      --------->MYB46(3)                                                     --------->ANAC58                                                     --------->ANAC58                <----------TaMYB80                                                     ------>MYB83                    --------->GLK1(1)                                                   --------->AtMYB61                 <---------GLK1(1)                                                   --------->DEAR3(1)                --------->HSFB2a(1)                           --------->ARR14(2)      <---------ALFIN1                 --------->ARR14(2)                    <---------At4g35610         <---------ALFIN1                    <---------GLK1(2)                    --------->ZAT2<<<<<<<<<<<<<<<<<LFY<---------MYB55(2)        <---------LBD16  ----                    --------->At4g35610        <---------At4g35610         --------->GLK1(2)     ----                    <---------ZAT2----------->RAV1(1)------>MYB46(1)       <-----------ARR10     ----                  <-----------RAV1(2)       <------NtERF2                  <---------ARR14(2)  ------                  ============================RAV --------->MYB46(3)      <---------GLK1(2)  ========      <----------DOF2      <---------GLK1(2)--------->At4g35610     <---------At4g35610      <------ZmHOX2a(2) <---------ALFIN1<---------At4g35610        <---------At4g35610     --------->At4g35610<-----------GT1 --->DOF2 --------->ATHB12 <---------ARR14(2)  --------->At4g35610  --------->ZAT2  <---------ARR14(2)   gcttcaccctttcgattggagcagctgcagatttggcaacaatggctgcagcaccacccatcacaaaatcagcagagaatctctcggattttccgatcaa  5730100                    ------>MYB83                    ------>MYB46(1)                                                        ----------       <----------DOF2                                                                    ------>ZmHOX2a(1)     ------>ZmHOX2a(1)                                                                --------->ARR14(2) ----->ANAC58     <---------MYB46(2)        --------->ARR11(3)            >>>>>>>ZML2 <---------ARR14(2) ----->ANAC46     <---------MYB59 --------->YAB1                          <---------HSFC1(1) ----->ANAC58    --------->ANAC55(2)        <---------ARR11(3)            <---------HSFB2a(2) ---->DOF2     <---------ALFIN1  <---------ATHB12                         --------->HSFC1(1) ===========HOX2a_HOX2a          --------->AHL20(2)                       --------->HSFB2a(2)      --   agccatcctcttttccctcacctaattctataccaataaatatagagatgttatgggcaagagtttcttctgggttctagaaatatcaaatcctaaagct  5730200                                                                                                    -                                                                           <------NtERF2      <------NtERF2                                                                          <---------At4g35610 -------                                                                          <------NtERF2      <-------                                                                          ------>NtERF2      <-------                                                                          --------->At4g35610<-------                                                                          --------->LBD16    ------>NtERF2                                                                         ----------->RAV1(1) <-------                                                                         --------->RRTF1(2)  <-------                                                                         --------->RAP2.3(2)<--------                                                                         --------->DEAR3(1) ---------                                                                        --------->RAP2.3(1) ---------                                                                       <---------ATERF1(1)  <--------                                                                       --------->LBD16      <--------                                                                       ------>NtERF2        <--------                                                                       --------->At4g35610 --------->ATERF1(1)                                                                      --------->DEAR3(1)   <------NtERF2                     ---------->DOF2                                  --------->ANAC46     <---------ABI4(1)   <----------ID1   <---------AHL20(2)         <---------LBD16  <---------GLK1(2)        <---------DEAR3(1) <---------------AtSPL8     --------->DAG2    ----------->RAV1(2)    <---------LBD16 <---------ARR11(3) >DOF2           --------->YAB1        ----------->GT1       <---------WOX13(1)      --------->ARR11(3) -------->DOF2  <---------YAB1       ----------->GT1  <---------WOX13(1)--------->RRTF1(1)<---------ATERF1(1)   aaaaaggaacaaaatttgataataaaaggaaaggttttgaagtgaaaaacctggagattgctaattgattctccgccgcagagagaagaactcggcggcg  5730300      <---------GLK1(1)      --------->GLK1(1)    --------->ATHB12  <---------WOX13(1) -------->ATHB12 -->RAP2.3(1) --RAP2.3(1) --DEAR4(2) --ATERF1(1)                                                                ---------->DOF2 --ORA47(2)                                                         --------->AHL20(2) --ERF1                                                      ------------------------>ANAC81 -ATERF1(2)                       <---------DEAR3(1)         --------->ANAC58          <---------ICU4 >ATERF1(2)           <------ZmHOX2a(1)      <---------MYB52(1)     <---------AHL20(1) --------->YAB1 >DEAR3(1)          ------------------------>ANAC81<---------ANAC58 --------->AHL20(1) <--------HAHB4 -DEAR3(1)         <------ZmHOX2a(1)       ----------->GT1   --------->ANAC58 *TSS--------->ARR11(3) -RAP2.3(2)     <---------HSFB2a(2) <------NtERF2<-----------GT1    <---------AHL20(2)<---------YAB1 -RAP2.3(3)  <-----------HVH21   <------ZmHOX2a(1) <---------ANAC58<---------ATHB12   --------->ICU4   aaagattgatttccaggtcgaggaggagaagaagaggaggcgatttcgttatttcgttttgagaagccaataaaatagaaaagagataatcattttctgt  5730400                                         <------MYB83                                         <------MYB46(1)                                       <---------ANAC58                        ------>ZmHOX2a(1)                    <------ZmHOX2a(1)  <---------ANAC46                        ======================               --------->ALFIN1 ------------>CBF                               <----------DOF2            <---------AtMYB61 <------ZmHOX2a(1)       <----------DOF2          ======================       --------->ZAT2        --------->At4g35610  <----------DOF2           ---------->ID1       <---------ZAT2      <-----------RAV1(2) <-----------GT1  <---------AHL20(2)  --------->AHL20(2)    ---------->DOF2----------->HVH21   <---------ANAC58         --------->AHL20(2)  <---------AHL20(2)   gaatttcaaagctggaggtggaggacagggcaggagcaatggctggttttttctttctttacttaaaaaaatggttttgtccttttttaatttcgaattt  5730500              --------->HSFB2a(1)              <---------HSFC1(2)              <---------HSFB2a(1)              --------->HSFC1(2)          ----------->GT1         <---------HSFB2a(2)         --------->HSFB2a(2)        ------>ZmHOX2a(2)       <------ZmHOX2a(2)      <---------ARR14(3)                                            <---------ARR14(2)      --------->GLK1(2)                                          <------MYB46(1)      --------->ARR14(2)                                    <---------HSFB2a(1)      --------->ARR11(3)                                    <---------HSFC1(2)      <---------ARR14(2)                                    <---------MYB46(3)      --------->ARR14(3)                              --------->LBD16      <---------AGP1               --------->LBD16  <---------LBD16 --------->ARR14(2)      <---------ARR11(3)       <-----------GT1     --------->MYB52(1)     <---------GLK1(2)      --------->YAB1   <---------TOE1(3)   <------MYB83             ------>ZmHOX2a(2)     <------ZmHOX2a(1) ------------>CBF   <---------AHL20(2)--------->HSFC1(2)         <---------ZAT14 ==============HOX2a_HOX2a  --------->AHL20(2) <------ZmHOX2a(1) <---------ANAC46    <---------WOX13(1) =============HOX2a_HOX2a--------->WOX13(1)  <---------TOE2(3)  --------->MYB59   ----------->HVH21 <   gaaaccaggatctggaaatttctggttcaattaaaaccggacattttaaggaaaaccggagatggttcggtatatggtgactgtctgactgatctgtgtc  5730600                                                                          --------->ZAT18                                                                          <---------ZAT18                                                                       <---------ANAC58                                                                       <---------ANAC58                                                                   <---------ARR14(2)                                                               ------>NtERF2                                                              --------->ANAC58                                                              --------->ANAC58            *TSS                                              --------->ANAC46           ----------->GT1                                 ----------->HVH21    --------->ANAC46          <---------TOE2(3)   --------->LBD16--------->ANAC58 --------->bZIP60(1)                  --        ---------->DOF2      --------->HSFB2a(2)           <---------ATHB12    --------->SPL7      --     --------->YAB1          <---------HSFB2a(2)           ----------->TGA1  <---------SPL7<---------TOE1(2) ----------DOF2     <----------DOF2          --------->ANAC58 <---------bZIP60(1)      ------>ZmHOX2a(1)   ttctttttcataaaggtttaaacttttagttccagagactgggagcgaagcaatggaatcaatgacgccaatctcgtgccctacgactcctcgttggaac  5730700                                               --------->At4g35610                                          ------>ZmHOX2a(2)                                        <---------ARR14(2)                                        --------->ARR11(3)                                  --------->ALFIN1                                --------->At4g35610   <----------DOF2                                <---------At4g35610  <---------ANAC58                            <<<<                              <-----------RAV1(2)    <---------ANAC58                    --------->AHL20(2)                            <-----------HVH21  <---------At4g35610                       <---------AHL20(2) ------->ANAC58       <---------DEAR3(2)<---------ARR11(3)                              --------->AHL20(2) ------->ANAC58    <-----------HVH21    --------->ARR14(2)                        --------->GLK1(2)   caagacagaccatttctcactggtcgcttccatcaggtgctcgatcttcagatgtgcttgattttagttctctaattcgttcaaattctatttaattgtg  5730800                                                             --------->At4g35610                                                             <---------ZAT2                                                            --------->ANAC58                                                <------ZmHOX2a(1)   ----------->GT1           <<<<<<<<<<<<<<<<<LFY--------->ARR14(2)     --------->At4g35610   --------->YAB1  --------->DAG2            <-----------RAV1(2)        <---------At4g35610 <<<<<<<<<<<<<LFY ---------->DOF2            <---------LBD16--------->ANAC58                <--------   aacattggtaacttctgagaaaaagtagttttgacaatgggtttatctcaggaaacgagggcaagctccaagtttgctgattctaagaggtttactttag  5730900  Previous    Next  AGI:  At5g17400.1    Description:  ADP, ATP carrier protein, mitochondrial, putative / ADP/ATP translocase, putative / adenine nucleotide translocator, putative. similar to AAC3 (ADP/ATP CARRIER 3), ATP:ADP antiporter/ binding [Arabidopsis thaliana] (TAIR:AT4G28390.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62434.1); contains InterPro domain Adenine nucleotide translocator 1; (InterPro:IPR002113); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067) Range:  from: 5728791    to: 5730378    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g17410.1    Description:  tubulin family protein. similar to SPC98 (SPINDLE POLE BODY COMPONENT 98) [Arabidopsis thaliana] (TAIR:AT5G06680.1); similar to H0311C03.7 [Oryza sativa (indica cultivar-group)] (GB:CAH67553.1); similar to hypothetical protein OsI_015980 [Oryza sativa (indica cultivar-group)] (GB:EAY94747.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14746.1); contains InterPro domain Spc97/Spc98; (InterPro:IPR007259) Range:  from: 5730612    to: 5736697    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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