Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                               <---------ICU4                                                                            <---------YAB1                                                                          --------->YAB1                                    <---------KAN4(2)                    <---------YAB1                                --------->HSFB2a(2)                 ------>ZmHOX2a(1)                               <---------LBD16                    <---------ZAT18       ------>ZmHOX2a(1)  --------->ETT(2)            <---------LBD16                    ---------->ID1       ----------->RAV1(2) >ARR11(3)               <-----------GT1                     --------->ZAT14--------->ICU4 -ARR11(3)  <-----------GT1--------->ZAT6             <----------DOF2  <---------At4g35610   cttgttgacagaaataacattgccatttaactctcgggaataaactagcttcaatgcttttagtttagtcctcttctgataattagtttcctgatgcaat  5724300                                                                       <---------AtLEC2                                                                 <---------GLK1(2)                                                           <---------YAB1                                                       <---------ARR14(2)                                              --------->ATHB12<---------WOX13(1)                  <---------WOX13(1)--------->ANAC46   --------->GLK1(1)           <---------ATHB12         --------->ANAC58   --------->ARR14(2)     <-----------GT1                --------->ANAC58   <---------GLK1(1)           <----------DOF2   ttccatataactaatcactgatttacataaacaagttcaagctagagaagattggagaattctcattgattctgcaagactcgacctttactacataaac  5724400                                                                                                   <-                                                                                                   <-                                                                                                  <--                                                                                                  ---                          <-----------------AGL1                                                 ----                       ----------->HVH21                               >>>>>>>>>TBF1             <---                     <---------At4g35610                            >>>>>>>>>TBF1                ----                     --------->At4g35610                      <---------HSFB2a(2)                <---   --------->DAG2  --------->ZAT14                       <---------ANAC58                      <-----  ---------->DOF2  <---------ZAT14   <----------DOF2     <---------ANAC58             <-----------RAV1(2)   ttgaaaaagttgaatttgtagtaaactgacctgttcaggctttggctcgggtttttgtttcgttcttgaagaagaagaagactttgcaccagggatagga  5724500             <---------ARR11(3)             --------->ARR11(3)            --------->CCA1(1)      ----------->GT1 --------------AGL15                                 --------->HSFB2a(2) ---------DOF2                                       <---------HSFB2a(2) -------------AGL15                                  ----------->GT1                                < ------------>AGL15                               <---------ARR14(2)                             ---- ------------->AGL1                        <---------LBD16                         --------->ARR14(2) --------------AGL1                        <-----------RAV1(2)                    ------>MYB83   ---- ------------->AGL2                       --------->TOE1(2)              --------->YAB1         <---- --------------AGL3        ------>ZmHOX2a(1)  <------ZmHOX2a(1)       ---------->DOF2   <---------ALFIN1 -ZmHOX2a(1)--------->RVE1(1) ---------->ID1--------->LBD16     --------->AHL20(2)------>MYB46(1)<---   cctttaatgggaaaatatctgttcttctcctcgtcgtaataaaacccaggaagttctgaaaaaaaaaaaaatcaaagataaaccaaattcccacatcaaa  5724600       --------->ANAC58       <---------ANAC55(2)       --------->ANAC58       --------->ANAC55(1)       --------->ANAC55(2)       --------->ANAC46     --------->GLK1(1)     --------->CCA1(2)    <---------ARR14(2)                                                          --------->ZAT18    --------->ARR14(2)                     <---------ARR14(2)                   <---------ZAT18 ---------LBD16                     <------ZmHOX2a(1)                          --------->ATERF1(1) ----->GLK1(2)                <-----------HVH21                     <---------ANAC46 ----->ARR11(3)           --------->GLK1(2)--------->ARR14(2)       --------->ETT(1) -----GLK1(2)             <---------ARR14(2) <-------TEIL        <---------ANAC46                   < ------ARR11(3)           --------->ARR14(2)--------->CCA1(2)    <-----------RAV1(1)   --------->ZAT14   atctcggatacgcaatcgaaaatagaagaatccgtcgaggaagaagattcagacctggtttcatgttgtgtcggacttggagtcgactctgttctctgtg  5724700                                                                                            <--------                                                                                            <--------                                                                                            <--------                                                                                          --------->YAB1                                                                           <-------MYC3   <---------ICU4                                                                          <---------ANAC55(1)                                --------->ANAC46                          --------->ANAC55(2)--------                   ---------->DOF2             <----------DOF2         --------->ARR14(2)<---------ATHB51               --------------->AGL15   ----------->TBP                 <---------ARR14(2)<---------ATHB12              ----------------->AGL3   <---------AHL20(2)            --------->LBD16  <---------AHL20(2)       --------->At4g35610      --------->ANAC58             <------------CBF    <---------YAB1       <---------At4g35610      --------->ANAC58  <---------TOE2(3)<---------LBD16   ------------>CBF ----------DOF2<---------------AGL15   --------->AHL20(2) <---------TOE2(3)------->MYC3  --------->ICU4   ttctttctcatcagacaccattaaaggctaacatgcgccatataaatagctttaggttttaagaattgaaccggaaacgtgtttttattcaattatggtt  5724800                                                             ------>ZmHOX2a(1)                                                             <---------DAG2                                                             <----------DOF2                                                         <-----------GT1                                                         --------->ARR14(2)                                ----------->GT1          <---------ARR11(3)                                <---------ZAT6           <---------ARR14(2)                              --------->YAB1            <---------CCA1(2)                          <---------YAB1                <---------GLK1(1)                         ------------>CBF               --------->GLK1(1)                 --------->AHL20(2)     ------->TEIL   --------->LBD16                    ---------->TaMYB80              <---------ICU4 -TOE1(3)         <---------LBD16                      ------->TEIL         --------->ANAC46 -YAB1            ------>ZmHOX2a(2)                    --------->ARR14(2)  ------->GAMYB--------->TOE2(3) -TOE2(3)        --------->ARR14(1)                    <---------ARR14(2) --------->MYB46(3)   ------ --->GT1      <---------YAB1  ----------->GT1       ----------->GT1       <---------MYB52(2)  <------   taaaatggaccggtttatgatccggtttacaatagtgaaaaacagaaaactaaaacgtatatcctttttgttcacaacaaacaacttcaacattatttaa  5724900                                                                     --------->YAB1                <-                                                                     <---------ICU4                --                                                                ------------>CBF              <------                                                                <------ZmHOX2a(2)      --------->LBD16                                                              <------ZmHOX2a(1)       <---------ANAC46                                                      --------->ANAC58               <---------LBD16-                                                      --------->ANAC58           --------->AtMYB61<--                        <---------ANAC58              --------->ANAC46           <---------ALFIN1<---                        <---------ANAC58              ----------->RAV1(1)       --------->MYB46(3)<--                      --------->ARR11(3)           ----------->RAV1(1)         <---------At5g28300<--         --------->ANAC46                        <---------At4g35610<---------ATHB12 --------->LBD16< ---->DOF2---------->DOF2                        --------->At4g35610<---------ATHB51--------->DEAR3(1) ---AHL20(2)   <----------DOF2           <---------ALFIN1 ---------->DOF2     <-----------GT1 <------   agggactctccacaaagctttttagttcttgtgctgtaatctcccactctcagcaccagcaaaaggatcaataataacatttaccaccgcgggttttctt  5725000     --------->MYB46(3)    --------->SPL7  <---------SPL7 --------RAP2.3(1) ------->LBD16 ---ANAC58 ----->NtERF2                       <---------ANAC46                                      <---------ANAC58 -------ANAC46                 ---------->CDC5                                            <---------ANAC46 ------LBD16          <-----------ARR10                                                   <---------ANAC58 -------DEAR3(1)      --------->ARR14(2)                         ---------->DOF2       <--------P   < -------RAP2.3(2)     <---------ARR14(2)                      ------>NtERF2         <---------AtMYB61 ------NtERF2     <---------At4g35610 --------->ALFIN1 --------->TOE2(3)        <---------ANAC58    < ---ANAC58---------->CDC5   <---------At4g35610     <-----------GT1             <---------ANAC58    =   gcggcgaacgactcagcgagagcggatttaagctcatcgggtgtttccacaatataacctttgcctccaaaggcttcaatgagcttgtggtagcctgcat  5725100                                                                                 --------->AtMYB61                                                                                --------->MYB46(3)                                                                              --------->ANAC46                        ===================HOX2a_HOX2a                     <---------ETT(2)                      --------->ARR11(3)                                 --------->LBD16                      <---------ARR14(2)                              --------->ABI4(1)                      <---------AGP1                                  ------>NtERF2                      <---------ARR11(3)                             --------->DEAR3(1)              <------MYB83  <----------DOF2                          --------->ANAC46          <-----------RAV1(1)       <------ZmHOX2a(1)--------->At4g35610--------->DEAR3(1)       <---------ATHB12 ------>ZmHOX2a(2)    <---------GLK1(1)      --------->MYB46(3)   --------->MYB46(3) --------->ARR14(2)--------->LBD16            <---------At5g28300 ------ZmHOX2a(1)    <---------CCA1(2)<---------LBD16<---------At4g35610<---------ANAC46 ----------ID1<------MYB46(1)       ====================================HOX2a_HOX2a                 - ==============================HOX2a_HOX2a   --------->GLK1(1)   <------ZmHOX2a(2)                 <-   taggaacaaatgatgttggtgctggatcttctttatgaggaccggagatttcttcaggtccccttcgatcaccgccgtagacaccaccattgttgaagac  5725200  Previous    Next  AGI:  At5g17370.1    Description:  WD-40 repeat family protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO15316.1); similar to Os07g0108000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058713.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 5721803    to: 5724721    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g17380.1    Description:  pyruvate decarboxylase family protein. similar to CSR1 (CHLORSULFURON/IMIDAZOLINONE RESISTANT 1) [Arabidopsis thaliana] (TAIR:AT3G48560.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN69570.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68769.1); similar to hypothetical protein OsI_002072 [Oryza sativa (indica cultivar-group)] (GB:EAY74225.1); contains InterPro domain Thiamine pyrophosphate enzyme, N-terminal TPP binding region; (InterPro:IPR012001); contains InterPro domain Thiamine pyrophosphate enzyme, C-terminal TPP-binding; (InterPro:IPR011766); contains InterPro domain Thiamine pyrophosphate enzyme, central r Range:  from: 5724761    to: 5726748    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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