Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                            --------->GLK1(2)                                  ----------->GT1                                  --------->ANAC58                                  --------->ANAC58               --------->ANAC46 -------AHL20(2)             --------->MYB59                   <-----------GT1 ------>AHL20(2)             <---------TOE1(3)            <---------AHL20(2)                     <--- -MYB52(1)  ---------->ID1   <---------TOE2(3)        <----------DOF2                            ----   ttaaacaaacatttggccttataagaaattttaggtaagaaaaaattctgagaagtcttttttattcacatcacatagtcaatattcaattcaatgcata  5710600                                       <---------YAB1                                       --------->ICU4                                     --------->YAB1                               ------>ZmHOX2a(2)                              <------ZmHOX2a(2)                                    --------->HSFB2a(2)                             <---------ARR14(2)    <---------YAB1                  <---------HSFB2a(2)                             --------->ARR14(2)   -------->P                 <---------------AGL15                          --------->TOE1(1)    <---------ANAC58              --------------->AGL15                          --------->TOE2(1)    <---------ANAC58              <----------DOF2                         <---------LBD16     <-----------GT1           <---------ZAT14         ---------->DOF2 --------->LBD16<---------ICU4                 --------->ZAT14      --------->AtLEC2   ------>ZmHOX2a(1)<---------YAB1               --------->REM1(2) ------AHL20(2)          =============HOX2a_HOX2a<-----------GT1    <---------ANAC46 ----->AHL20(2)  <----------DOF2    <---------ATHB12              <---------At5g28300   taaatttcatgtaaagcttcttttttcctcggatcccattcattattttacttaccattgaatactttcaccgtgtagtctttttttagaaatcgttgaa  5710700                                                        ----------->HVH21                                                      --------->YAB1                                                     <-------TEIL                                              <---------SPL7                                           <-----------HVH21         ------->TEIL                                          --------->bZIP60(1)     <---------YAB1                  ---------->DOF2         <---------bZIP60(1) <----------DOF2             >>>>>>>>>TBF1              --------->At4g35610   <---------DAG2             --------->YAB1   tatcaaaaacaagaagaagaaaaagaaaccgtgttttcaatgtgctgtcatacgattcatgaccctttatgaatctaatacagagtttgaaacataaact  5710800                                                                      <---------WRKY45                                                                      <---------WRKY38(1)                                                                      <---------WRKY12                   xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         --------->CCA1(2)                  xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        <---------ARR11(3)                  xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     ---------->DOF2                 --------->ANAC46       <---------HSFC1(2)                      --------->ZAT6--------->AHL20(1)          --------->ANAC58       --------->HSFC1(2)                    <-----------GT1 --------->ARR11(3)          --------->ANAC58   aaacttggaagtttgccaaaaaaaaaaaaaaaaaaaaaacttggaaataacacttctcaaaaagatattgggtcaaagtctaaaactgaaaacgaaacta  5710900                                                                          <----------DOF2                                                                     --------->HSFC1(2)                                                                     <---------HSFB2a(1)                                                                  --------->LBD16                                                            --------->HSFC1(2)                                                            --------->HSFB2a(1)            --------->ANAC58                                       --------->ANAC58     <---------HSFC1(2)   <---------YAB1                                <---------ANAC58      --------->DAG2 <---------HSFC1(2)    --------->ANAC58                                <---------ANAC58     ---------->DOF2 --------->HSFB2a(1)   --------->ANAC46   --------->ICU4    ---------->DOF2   --------->ANAC58     <---------HSFB2a(1)  <---------AHL20(2)   gaggcattattctctaattcaaacaaagtttagggcttgggaagaaatattcacaaaaaggaagtttccgaaaattcttttatattattccccaagcaaa  5711000               --------->ATHB12              <---------YAB1              *TSS              --------->ICU4            --------->YAB1         <------------CBF        --------->ATHB12                                                                <---------DAG2       <---------YAB1                                                              ==================      --------->ARR11(3)                       --------->YAB1                 ------>ZmHOX2a(1)      <---------ARR11(3)                --------->ALFIN1           --------->ANAC46------>ZmHOX2a(2) ------------>CBF                  ---------->DOF2     ===================================HOX2a_HOX2a <---------ATHB12            ----------------->AGL3    ------>ZmHOX2a(1) <----------DOF2<----------DOF2   ccattcaatatcattgattattgatataaaacccatataaaggtgtctctcatcatcctccattcccatacatcactttcctcgatctcactttctctct  5711100                                                                                 <---------ALFIN1                                                                  <---------------AtSPL3                                                     --------->ANAC58           --------->ZAT14                                            <---------ZAT18       --------->ATERF1(1)               <                                            --------->ZAT14--------->ARR14(2)   <---------ZAT18    --            ------>ZmHOX2a(1)               --------->ZAT18<---------ARR14(2) <-----------HVH21    --            --------->LBD16             <---------AtMYB61<---------SPL7<---------O2--------->ANAC46--          ----------->RAV1(2)        ----------->HVH21------>NtERF2    --------->O2--------->ANAC58--     <---------ICU4                 --------->LBD16  --------->ANAC46  --------->TGA1a             --  --------->YAB1                  <---------LBD16    --------->ANAC58  <---------TGA1a             -- <---------YAB1                --------->At4g35610   <---------ALFIN1 --------->SPL7  <---------ALFIN1 ==================HOX2a_HOX2a <---------At4g35610 <---------ALFIN1 <---------SPL7 --------->ANAC58<-   cttatcatcatctcctggtattctctctctctcatctccgtgatggtgctctcccacgccgtatcggagtcggacgtctccgtccactccacattcgcat  5711200              <---------ZAT14       --------------->AtSPL3       <-------TEIL    <---------ANAC55(2)    <---------ANAC58    <---------ANAC58    <---------ANAC46 <---------MYB52(1) -----------HVH21 ------->ANAC55(1) ------->O2--------->SPL7             <-----------GT1 ------->ANAC58                  --------->AHL20(2) ------->ANAC58            <-------TEIL ------->ANAC46        <---------TOE2(2)      --------->YAB1                            ----------->GT1 ------->ANAC55(2)     <---------TOE1(2)    --------->GLK1(2)                          ----------->GT1 --------ANAC55(2)    ------>ZmHOX2a(1) --------->ZAT6     <---------YAB1    --------->YAB1   cacgttacgtccgtacttcacttcctaggtacaaaaaatataacacaatcttgatcacattatacttctatattttcgataaaaatggagggctaaaaac  5711300                                                       <------ZmHOX2a(2)                                                 <---------ARR14(2)                                              <---------ANAC58                                              <---------ANAC46                       --------->ARR14(2)                                              <---------ANAC58                       <---------ARR14(2)                                             <------NtERF2          <---------At4g35610                                           <---------DEAR3(1)       --------->At4g35610                                          --------->At4g35610       --------->ZAT2  <---------GLK1(1)                     <------NtERF2        <---------At4g35610       <---------ZAT2  --------->GLK1(1)                  <---------LBD16         --------->ATERF1(1)  ------->GAMYB  <---------WRKY18(1)          <-------TEIL                 =======================HOX2a_HOX2a    ----------->HVH21  --------->CCA1(2) --------->LBD16  <---------TOE2(3)--------->ARR11(3)   <---------ANAC58  <---------GLK1(1)<---------ANAC46===========================HOX2a_HOX2a  <---------ANAC58 <-------GAMYB --------->ARR11(3)--------->RAP2.6(2) <------ZmHOX2a(1)      --------->MYB46(3)<---------ANAC46 <---------ARR11(3)--------->LBD16 ------>ZmHOX2a(1)  <---------ARR11(3) <---------YAB1  <---------LBD16   gtagatatcaggttcaagatgccggaaaactcgattcctaaggaagcggcgtatcagatcatcaacgacgagctgatgcttgacgggaatccacggttga  5711400                                                                                                    <                                                                                                    -                                                                                                    -                                                                                                   --               --------->bZIP60(1)                                                             <-----               <---------bZIP60(1)                                                             <-----               --------->TGA2(1)                                                              -------               <---------TGA2(1)                                                              -------            ----------->HVH21                                                                 -------            ----------->TGA1                            ------>ZmHOX2a(1)                 --------->SPL7        <----------DOF2                          <---------ICU4     <---------ARR11(3)    --------->ZAT18   acttagcctcctttgtgacgacatggatggagcctgagtgtgataaactcatcatgtcctccatcaacaagaactatgttgacatggacgagtaccccgt  5711500  Previous    Next  AGI:  At5g17330.1    Description:  GAD (Glutamate decarboxylase 1); calmodulin binding. Identical to Glutamate decarboxylase 1 (GAD1) [Arabidopsis Thaliana] (GB:Q42521;GB:Q9FFH9); similar to GAD3 (GLUTAMATE DECARBOXYLASE 3), calmodulin binding [Arabidopsis thaliana] (TAIR:AT2G02000.1); similar to GAD4 (GLUTAMATE DECARBOXYLASE 4), calmodulin binding [Arabidopsis thaliana] (TAIR:AT2G02010.1); similar to GAD2 (GLUTAMATE DECARBOXYLASE 2) [Arabidopsis thaliana] (TAIR:AT1G65960.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO42441.1); similar to Glutamate decarboxylase (GAD) (GB:Q07346); similar to glutamate decarboxylase [Populus tremula x Populus alba] (GB:ABA18652 Range:  from: 5711014    to: 5715077    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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