Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                         --------->ARR11(3)                                       <---------ARR11(3)                                      --------->GLK1(1)                                      --------->CCA1(1)                                     --------->ARR14(2)               <---------ANAC58           <----------DOF2           <---------ARR14(2)               <---------ANAC58 ------>TOE2(3)              ------->GAMYB ------>ZmHOX2a(1)          <---------ANAC55(2) --->ARR14(2)             --------->MYB52(1)                ----------->RAV1(2) ----ARR14(2)        <------ZmHOX2a(1)--------->RVE1(1)   <---------ALFIN1 >GT1  <---------TOE2(3)  ----------->RAV1(1)        <---------At4g35610   ccttgaaataaggctttataagaggaatcaacagaggcaaatatcctattcttggtgctaacacctgataatgcgtgccaaacaaatagcaaattcagaa  5689500                                                                                         <---------ANAC55(2)                                                                                         --------->ANAC58                                                                                         --------->ANAC46                                                                                         --------->ANAC58      <---------CCA1(2)                       ------>ZmHOX2a(1)                <---------YAB1    ------>ZmHOX2a(2)          <---------ANAC46                  ----------->GT1         --------->ANAC55(2)  --------->ARR11(3)           <---------ANAC58        <---------ATHB12       <---------TOE2(2)     -  <---------ARR11(3)           <---------ANAC58      --------->WOX13(1)       <---------TOE1(2)     -   gtatgatcttatctcgacccagttacacaaatttcgtctaaattcttcctcgtttcaatcaatttgatggtcaaaaatcgtatgattcaatacgaaatgg  5689600                                                           <---------ALFIN1                                                           --------->DEAR3(1)                                                    --------->GLK1(1)                            <---------YAB1          --------->CCA1(2)                          --------->YAB1           --------->ARR14(2)                --------->ANAC58                   <---------ARR14(2)           ---------->DOF2<---------ICU4---------->DOF2    --------->AtMYB61          ---------->DOF2<------ZmHOX2a(2)    ----------->RAV1(1)                               ----- -------->ANAC58--------->ANAC46  ----------->RAV1(1)     --------->MYB46(3)                    <---- -------->ANAC58--------->ANAC58------>ZmHOX2a(2)  <---------GLK1(2)                    ---------->DOF2   aaacgaaacccctaaaacccgaaatcgatcatgatccaacaccaaagaccacagatttgcaccaccgatttgaaaaccagacatgagaaaaaaagcttgg  5689700                                                      <---------GLK1(1)                                                      --------->GLK1(1)                                                     --------->ARR14(2)                                                     <---------ARR14(2)                                                <-----------HVH21                                               --------->bZIP60(2)            --------->ARR14(2)                                               <---------bZIP60(1)            <---------ARR14(2)                                               --------->TGA1a               <------ZmHOX2a(1)                                               --------->bZIP60(1)     <---------ZAT14                               --------->ZAT2  <---------DEAR3(1)      --------->At4g35610            <-----------GT1  <------ZmHOX2a(1) <---------ANAC46        --------->ZAT14     ----------->GT1       --------->ALFIN1    --------->O2        ------->TEIL    --------->DAG2        <------ZmHOX2a(1)    <---------TGA1a     --------->ARR14(2)  ---------->DOF2       --------->ALFIN1       <---------O2   --------->At4g35610 ---->HSFB2a(2)        <------ZmHOX2a(1)       <---------bZIP60(2) <---------ARR14(2) -----HSFB2a(2)     <-----------RAV1(2)     ----------->HVH21 <---------At4g35610      ------>ZmHOX2a(1)   agaagaaaggtgatttacaagagcaggaggaggagcagggtgagaagcgacgtcggatttgtggagatgaatctgcagaggaattgctccttcccataca  5689800                                  <---------ALFIN1              --------->ANAC46 ----------->HVH21      <---------At4g35610     <-----------TGA1      --------->At4g35610     <-----------HVH21                           <----------DOF2           <    -------->ZAP1            --------->bZIP60(2)                        --------->ZAT2              -  <---------WRKY18(1)        --------->O2   --------->ANAC58            --------->At4g35610        <- --------->WRKY12            --------->ANAC46                           <---------At4g35610       --- ----------->HVH21          --------->LBD16 --------->ANAC58            <---------ZAT2            ---   tacttgaccgcttccttcgccattctcttccccgtcacaccttctcacgctcgctcgcttcacaaaaaaaactcagctttcaaaacgacgctgtttctgt  5689900                                                                              ----------->HVH21   --------->TGA2(2)                                                         --------->TOE1(3)  <-----------TGA1                                                          <---------ANAC58  *TSS<---------At4g35610                     <---------MYB52(1)            <---------ANAC58 <<<<<<<<<<HY5                               --------->TOE2(3)              <---------ANAC46 --------->TGA2(1)                          --------->ANAC58              <---------DOF5.7(2) <---------O2                               --------->ANAC58           <------NtERF2 <---------TGA2(1)                         <---------TOE1(2)          <---------MYB46(3) --------->bZIP60(1)                       <-------TEIL              <---------RAP2.6(2) >>>>>>>>>>HY5                             <---------TOE2(2)       <---------MYB46(3) <---------bZIP60(1)                    <---------ANAC58           --------->MYB52(2) --------->O2                           <---------ANAC58           <------MYB46(1) --------->ANAC55(2)       ----------->GT1 ------->TEIL            <------MYB83 ---------->DOF2 <---------ANAC55(2)    <-----------RAV1(1)--------->SPL7         <---------AtMYB61 -----------STF1    <----------DOF2     <---------ANAC46          <---------MYB46(3) ---------->STF1    <---------------AGL15<---------SPL7           --------->MYB55(2) --------TGA2(2)<---------ANAC58       <---------------AtSPL3    <---------MYB52(1)       <---------- -------->HVH21 <---------ANAC58     --------->DAG2            <-----------RAV1(1)     <-------GAMYB -------->TGA1  <---------ANAC46 --------->YAB1          <----------DOF2  --------->MYB52(1)   atgacgtcatcttctcttgcgtctttatgtggtattaataaggcgtacgttagacactgcttaatctgttggtggctaacgtgaaagggtgttaaccggt  5690000                                                                  <-----------RAV1(1)                                                                  <---------MYB46(3)                                                               --------->MYB52(2)                                                             <---------MYB52(1)                                               ----------------->AG                                               ----------------->AGL1  <------MYB46(1)                                          <------MYB83     <------MYB46(1)                                          <---------MYB46(3)<-------GAMYB                                          <------MYB46(1)  <------MYB83<---------ANAC58                                         <---------AtMYB61 ----------->GT1                               <---------TOE1(3)          --------->MYB59    <------MYB83--------->GLK1(2)       <--------P <---------ARR14(2)  <------MYB83    <------MYB46(1)            <---------TOE2(3)   --------->GLK1(2)   <---------ANAC46             <   --------->MYB59    --------->YAB1  <---------ZAT6    <---------MYB52(1)      <----------DOF2     < -GT1    ----------->GT1      <-----------RAV1(2)  --------->ARR14(2)  <---------ANAC58   <---------ALFIN1   ctaatttggtctggtcaaattctatcaaaatttcaggttagagttggtttccgaatcggttcggttatttgttgggtttgaactttgaacacacacttgt  5690100            --------->TOE2(3)      <---------MYB46(3)                                             <---------AHL20(2)    <---------ANAC46                                                <---------AHL20(2)   <------MYB83                                                  ------>MYB83   <------MYB46(1)                                               ------>MYB46(1)  --------->MYB111(1)                                          <---------MYB59  <---------MYB46(3)                                           --------->TOE2(3)              <------  --------->MYB111(2)                                     <---------MYB46(2)                  -------  <---------AtMYB61                                    <-----------GT1                        -------  --------->MYB55(2)                        --------->ANAC58------>MYB46(1)   <---------ARR11(3) <---------MYB52(1)         <----------DOF2 --------->ANAC58------>MYB83      <---------ARR14(2) -------GAMYB     <------------------------ANAC81    <----------DOF2--------->AHL20(2)      <-------- ---------At4g35610   <-----------GT1     ---------->DOF2 <---------MYB59     --------->ARR11(3)-----   tcagttggtggtaacctcactgtttttcttctttgccttcatttcaaagcaaactctttaccaaacctaatttaatcggagatattgaagagagacacct  5690200                                          --------->ATHB12                                          <---------ICU4                                          --------->YAB1                                          <--------HAHB4                                         <---------YAB1                                         <---------ATHB12                                       <---------ICU4                                      --------->ICU4                                    --------->YAB1                                 <------ZmHOX2a(2)      <----------DOF2           <---------AGP1     <---------ANAC58           <---------ARR11(3)     <---------ANAC58           --------->ARR11(3) ---At4g35610               ---------->DOF2 -->At4g35610             <---------YAB1 --------->ICU4 ---->RAV1(2)             <---------TOE2(3)--------->TOE2(3)                              <----------DOF2 -ALFIN1             --------->WOX13(1)--------->YAB1 --------->ZAT6          <---------At5g28300 ------>HVH21   --------->MYB46(3)------>ZmHOX2a(2) <-----------GT1          <-----------GT1   gaaacttgcttttgttgaaccatcaattaagaaagatctcataatcattagatttaactgtataaattgtacacgagttttacagttacaaacttttgca  5690300                                                                                                   --                                                                                                  <--                                                               --------->YAB1             --------->YAB1                     <---------ALFIN1                 <---------ICU4                      -----------                 --------->MYB46(3)             ----------->RAV1(1)         ---------->DOF2  <-------   gaaaattttagcctagagaacaaacacctcaagagaaaacaatgaaacaacaacaaaaattacattgatgaaaacttagaaagtcgaatgaatagtaaat  5690400  Previous    Next  AGI:  At5g17290.1    Description:  APG5/ATG5 (AUTOPHAGY 5); transporter. Identical to Autophagy protein 5 (ATG5) [Arabidopsis Thaliana] (GB:Q9FFI2); similar to hypothetical protein [Vitis vinifera] (GB:CAN83659.1); contains InterPro domain Autophagy protein 5; (InterPro:IPR007239) Range:  from: 5686947    to: 5689902    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g17300.1    Description:  myb family transcription factor. similar to EPR1 (EARLY-PHYTOCHROME-RESPONSIVE1) [Arabidopsis thaliana] (TAIR:AT1G18330.2); similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT3G10113.1); similar to EPR1 (EARLY-PHYTOCHROME-RESPONSIVE1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G18330.1); similar to putative At5g37260-like protein [Solanum chilense] (GB:ABW22160.1); contains InterPro domain SANT, DNA-binding; (InterPro:IPR001005); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding (InterPro:IPR014778); contains InterPro domain Myb-like DNA-bi Range:  from: 5690229    to: 5692904    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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