Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      <---------YAB1                                                                                <---------YAB1                                     <---------GLK1(1)                       <---------YAB1                                     --------->GLK1(1)                    <---------WOX13(1)                               --------->MYB52(1)                       <--------ATHB1 <------MYB46(1)           -------->HAHB4                               -------->HAHB4 <------MYB83              --------->ATHB12                             <---------ICU4 -------->MYB59--------->CCA1(2)     --------->CCA1(2)                  --------->YAB1            <-- --------MYB55(1)         --------->ICU4                                --------->ATHB12          --- -------MYB52(1)          <---------YAB1                               <---------ATHB12          <--- ---->ANAC58  <---------ARR11(3)    <---------ARR14(2)                 <---------YAB1  <---------WOX13(1) ---->ANAC58  --------->ARR11(3)    --------->ARR14(2)                 --------->ICU4--------->ATHB12   gttaggtttagtagaagatttagacaaaatgattaacggatatgtgtttgattaagagtattgaaactttgtaatgattgttattcttgattgaagtaga  5658100                                                                                    <-------GAMYB                                                                                   <---------MYB46(3)                                                                                   --------->MYB55(2)                                                                            --------->DAG2                   <-----------HVH21                                       ---------->DOF2                   <-----------TGA1                                   --------->ANAC58                  --------->bZIP60(2)                                 --------->ANAC58                  --------->ANAC58                             <---------YAB1      --------->MYB111(1)    --------->HSFB2a(2)                                     --------->AHL20(2)     --------->MYB111(2) -------ARR11(3)  --------->ANAC46                          <---------AHL20(2)    <--------P ------>ARR11(3)  --------->ANAC58               ------->TEIL<---------AHL20(2)--------->ALFIN1   <-- ------GLK1(1)   <-----------STF1---------->ID1 <---------CCA1(2) <---------YAB1<---------MYB46(3)---   aatctttgagaaccccaaaaacgtcacttagttttgtagtttttttctctgaatctttcttatttattatgcaagtcaaaagtggttgttgggaagagaa  5658200                                                               --------->MYB52(1)                                                          <---------------AGL15                                                   <---------AHL20(2)                                                   --------->AHL20(2)      <---------YAB1                                                  --------->AHL20(2)   <----------DOF2                                            --------->YAB1--------------->AGL15    ---------->ID1             --------------->AGL15     ----------------->AGL1 -------ZAT6                   <---------------AGL15     <-----------------AGL1 --------->YAB1------- ------>ALFIN1                 ===========================================MADS_MADS<---------MYB46(3)   gtgttcgtctcatttacaacaaaaattcgatagcgatatatagtaatcgaaattttattcccaaacaagggaactttgttattgatagttggaactaaaa  5658300                                                                         --------->MYB46(3)                                                               ------>MYB83                                                            --------->MYB46(3)                                                   ------->MYC3------>MYB46(1)                                                --------->AtMYB61        <---------MYB55(2)                                             --------->AtMYB61------>MYB83------->GAMYB                          --------->MYB46(3) ------->GAMYB  <---------MYB111(1)                        --------->ARR14(2)  <---------MYB55(2)------>MYB46(1)                        <---------ARR14(2)  --------->MYB46(3)<---------ALFIN1                     --------->ANAC55(2)   -------->P       <---------MYB59              --------->ARR11(3)                     <---------ANAC55(2) --------->MYB46(3) <---------MYB55(2)           <---------ARR14(2)                    <-------TEIL      <------ZmHOX2a(1)    --------->ANAC46-------->P   <---------CCA1(2)                 --------->YAB1<-----------HVH21<---------ALFIN1 ------->GAMYB  <---------GLK1(2) --->DOF2       <---------ATHB12<---------MYB52(1) <-------MYC3-------->P<---------MYB111(2)   gtttgtagagaaatttcaatgatacatatccaccgttagaggaacaaccaccacatgttctacccaaccctcacaacaaccagtttcttcaaatcttgag  5658400                                                               <---------CCA1(1)                                                               <---------RVE1(1)                                                              --------->AHL20(1)                                                              --------->ARR11(3)                                                              <---------AHL20(1)             <---------ALFIN1                                 *TSS    <---------ICU4           ----------->RAV1(1)                                <---------ARR11(3)                  ---   <---------AHL20(1)                      <-----------GT1  --------->ANAC58                 <-------   <---------AHL20(2)                  ----------->TBP      --------->ANAC58    ----------->GT1   ---   --------->AHL20(2)                  --------->YAB1 <---------WOX13(1)  <-------TEIL<---------ARR11(3)   --------->AHL20(1)      <---------CCA1(2)       <---------YAB1  --------->YAB1     --------->ARR11(3)   tctaataaaatgccaacacatctactctcatttcttctcatttataaaccagtttgatagacaagatattaataagtgcatatagtaaaatctttcttat  5658500                                                            <---------ANAC58                                                            <---------ANAC58                                                           --------->ZAT2                                                           <---------ZAT2                                                        --------->At4g35610                                                        <---------At4g35610                    ------                                                       ------->GAMYB                        <--------                                                    --------->MYB52(1)                      ---------                                                 <---------ANAC55(2)                      --------->HSFB2a(2)    ---------->DOF2                              --------->ANAC58--------->ZAT18 <----------DOF2 ------>ANAC46                                   --------->ANAC55(2)            <---------ANAC58 --YAB1 --------->ARR11(3)  <---------MYB46(3)   --------->ANAC58<---------ZAT18<---------ANAC58 ------>YAB1          --------->HSFB2a(2)        --------->ANAC55(1) ---------->DOF2      <---------HSFB2a(2)   tcgtaacaaagttattgtaaacttatagaatggttgtgaaactatatggacaggtaacagcagcttgtccacaaagagtcttgctttgttttctcgagaa  5658600                                                                        ----------->GT1                                                                        --------->At4g35610                                                                        <---------ANAC55(2)                          <---------ARR11(3)                          <-----------RAV1(2)                          --------->ARR11(3)                         <---------MYB52(1)                   --------->YAB1                                   <-----------HVH21 ---->DOF2     --------->KAN4(1)                                    <-----------TGA1 -HSFB2a(2)   <---------KAN4(2)   <-------TEIL             <---------ARR11(3)             --------->TOE2(3) >HSFB2a(2)<---------TOE2(3)------>ZmHOX2a(2)              --------->ARR11(3)   <----------ID1  -----   aggaattgaatttgagattattcatatcgatcttgatacatttgagcaaaaaaaaccagaacatcttcttcgtcaggtaaaaaaaacaaatttcttaaac  5658700                    -------->ATHB1                    <---------ICU4                    --------->ATHB51                    <---------AHL20(2)                    --------->ATHB12                    -------->HAHB4                   <---------ATHB51                   --------->ICU4                   <---------YAB1                 <---------ICU4                 --------->YAB1                --------->ICU4                <---------YAB1               <---------AHL20(2)               --------->AHL20(2)               <---------AHL20(1)              --------->YAB1             <---------AHL20(2)          --------->AHL20(2)          --------->AHL20(1)                  <<<<<<<<<<WRKY26          <---------AHL20(1)                  <<<<<<<<<<WRKY38          <---------AHL20(2)                  <<<<<<<<<<WRKY43          --------->ARR11(3)                  --------->WRKY18(1)          <---------ARR11(3)                <------MYB83                              ----------->GT1         --------->AHL20(2)                 <------MYB46(1)                      <----------DOF2    <    --------->TOE2(3)                    <---------MYB52(1)                      <---------DAG2     - ---->TOE2(3)<---------YAB1      --------->ALFIN1      --------->ANAC46  --------->GLK1(1)      -----   ttaaaacataaatatattataattattgttttcatgtgtagccatttggtcaagttccagccatagaagatggagatttcaagctttttggtaacatcct  5658800                                                              <---------ARR11(3)         <---------AHL20(2)                                <----------DOF2     --------->ANAC46  ---- -----------GT1            --------->YAB1<---------ZAT6---------->ID1          --------->ANAC58  ---- -------->YAB1            <---------ATHB12         >>>>>>>>>SARD1              --------->ANAC58  ---- ->ZmHOX2a(1) <-----------GT1     <----------DOF2  >>>>>>>>>CBP60g      <---------ICU4     <---------ARR11(3)   aataacaacattttataaacattcttctatcattttctttatagtgttttgaaatttggctctttatcttctaagaatcacgagccatcgcgagatacta  5658900                                                                              <---------O2                                                                              --------->O2                                                                              --------->TGA1a                                                                              <---------ANAC58                                                                              =======================                                                                              <---------ANAC46                                                                              <---------TGA1a                                                                              <---------ANAC58                                                                              <---------bZIP60(2)                            <---------DAG2                                 xxxxxxxxxxxxxxxxx>smallRNA(si3)                       --------->ANAC58                                    ----------->TGA1                       <---------MYB52(2)                                  ----------->HVH21                       --------->ANAC58                                  ----------->bZIP910(2)                  --------->ANAC58                                       --------->At4g35610            --------->DEAR3(1)                                           <---------At4g35610            --------->LBD16--------->HSFB2a(1)                         --------->ZAT14          --------->HSFB2a(2)                                          <---------ZAT14          <---------LBD16 ------->TEIL                                 --------->ZAT18          <---------HSFB2a(2)                       --------->DEAR3(1) <---------ZAT18          --------->At4g35610                   --------->ZAT14       --------->ALFIN1          <---------At4g35610<----------DOF2    --------->ZAT18--------->WRKY12  --------->REM1(2) ----->ANAC58     --------->ANAC58    --------->ANAC58         --------->WRKY38(1) ----->ANAC46     --------->ANAC46    --------->ANAC58      <---------ANAC46<---------TGA2(2) ----->ANAC58------>NtERF2<-----------------AGL1<---------ZAT14--------->WRKY45 --------->ALFIN1   cgctaccaagttcgcggaccaaggcacgaaccttttgggcaagtctctagagcaccgagccatcgtggaccagtgggctgacgtggagacctattacttc  5659000  Previous    Next  AGI:  At5g17210.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G13380.1); similar to Os06g0114700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056606.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62222.1); contains InterPro domain Protein of unknown function DUF1218 (InterPro:IPR009606) Range:  from: 5656385    to: 5658149    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g17220.1    Description:  ATGSTF12 (GLUTATHIONE S-TRANSFERASE 26); glutathione transferase. similar to ATGSTF11 (GLUTATHIONE S-TRANSFERASE F11), glutathione transferase [Arabidopsis thaliana] (TAIR:AT3G03190.1); similar to glutathione S-transferase [Citrus sinensis] (GB:ABA42223.1); contains InterPro domain Thioredoxin-like fold (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, C-terminal-like (InterPro:IPR010987); contains InterPro domain Thioredoxin fold (InterPro:IPR012335); contains InterPro domain Glutathione S-transferase, N-terminal (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal (InterPro:IPR004046) Range:  from: 5658462    to: 5659388    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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