Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        <---------ICU4     <---------YAB1    --------->ARR11(3)    <---------ARR11(3)   --------->YAB1                                            <---------------AtSPL8  <---------YAB1---------->DOF2 --------->ANAC46            --------->DAG2 -------->CCA1(2)               --------->ANAC58           --------->DAG2 ------->ARR14(2)               --------->ANAC58          ---------->DOF2 --------ARR14(2)             --------->AtMYB61 --------->At5g28300       <---------YAB1 ----RAV1(1)    <---------DOF5.7(2)            ----------->GT1 <----------ID1   ggatatgatcatttcagttaaagtctccaaaaccacaccattgtctaggcagtaaaaaaaaaaaggggacacaattgtgaaagtttttgaacacttattt  5647400                                                                 <<<<<<<ZML2                                       <---------TOE2(2)      --------->HSFC1(1)                                     --------->TOE2(2)        --------->HSFB2a(2)                                  --------->AHL20(2)  --------->ARR11(3)      ------>MYB83          <                           <---------PCF2             <---------ARR11(3)      ------>MYB46(1)--------                           <---------PCF5        <------ZmHOX2a(2) --------->ZAT6            <-------                           --------->TCP20      <---------ARR11(3)<---------ZAT18            --------    --------->ANAC58       --------->TCP15(1)   --------->ARR11(3)--------->ZAT18            --------    --------->ANAC58    --------->ALFIN1    ---------->DOF2   <---------HSFB2a(2)            --------   cagtcgaagcaagtttgagtttagatgtgggaccaataacataggtaaaagatcaacatctcgtctagaacactatgacctagccaaactatatcacgaa  5647500                                                   --------->TOE2(3)                                                  <---------ANAC55(2)                                                  ----------->GT1                                         --------->YAB1                                 <---------DAG2  <---------TOE2(3) -----------GT1                  <----------DOF2<---------DOF5.7(2) ->ANAC58                  ------>ZmHOX2a(1)  --------->DOF5.7(2)  ----------->GT1              ===== --ANAC55(2)           <-----------GT1  <---------YAB1          ------------------------>ANAC81 ----- ->ANAC46       <---------AHL20(2)    --------->YAB1          ---------->DOF2               --------- ->ANAC58       --------->AHL20(2)   <---------YAB1--------->TOE1(3)                       ---------- ->ANAC55(2)  --------->AHL20(2) --------------------->WRI1 --------->YAB1                 ==========   atttacatatgtccaaatttatatttctccttcccctttattatcatcgataacgtaaactatcaaaagcagaaaaatagagagacagagagaaaaagga  5647600                                          <---------MYB52(2)                                          --------->MYB46(3)                                        <---------DOF5.7(2)                                    <---------ANAC58                                    <---------ANAC46                                    <---------ANAC58                                    <------NtERF2                                   ------>NtERF2                                  <---------ANAC46                                 --------->ATERF1(1)                                 <------NtERF2                                <---------ERF1                                <---------RAP2.3(1)             <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           <---------TGA1a      <---------ATERF1(1)           --------->TGA1a      <---------DEAR4(2)    >>>>>>>>>WRKY6           --------->O2         <---------RRTF1(1)  --------->WRKY12           <---------O2         ------>NtERF2 --------->ANAC58           ===============================================MYC_MYB           <---------ANAC46    <---------RAP2.3(2)  --------->WRKY38(1)         --------->KAN4(2)    --------->MYB52(1)   ------->MYC3 --------->DOF5.7(2)                ----------->RAV1(2)    =================MYC_MYB   --------->DEAR3(1)   --------->WRKY45   --------->AtMYB61    -------->P--------->REM1(2)<---------DEAR3(1)  --------->DOF5.7(2) <---------ALFIN1 --------->At4g35610     <-------MYC3 ----------->HVH21             ------>NtERF2 ====================bZIP_DOF  <---------O2   --------->ANAC58     <---------ETT(1) ----->DOF2<---------ANAC55(2) <---------RAP2.3(3) <---------MYB52(1) --------->MYB46(3) >DAG2     <---------ANAC58    --------->O2  ------->TEIL          --------->LBD16           -------- >DOF2     <---------ANAC58 ----------->HVH21--------->SPL7  ------->TEIL--------->At4g35610 <------- ====================bZIP_DOF --------->ATERF1(1) <-------GAMYB ------>NtERF2  <---------KAN4(1)-----   aagagctaccgagacgtgaagagaccatatgcgacggcgcgtgaacgaacgccgttgactatgtgcctcccgaccacctgaatgttcttcgatttggctg  5647700                 --------->ANAC46                                     <---------AHL20(2)                --------->ZAT14                                      <---------YAB1                 <    --------->ZAT6                                                 <--------HAHB4                 <-- ->At4g35610    <---------ZAT18                                   <---------YAB1      <---------MYB46(3) --At4g35610    <---------ZAT14                           <------ZmHOX2a(1)          *TSS         <-- ->NtERF2   --------------->AtSPL8                      <---------TOE2(3) ----------->GT1         <--   ccattaactctatttctgtacacaatattgagggagagaagagtgagagagagttgtttaggatgagtattattaatggtgaattcagtagttgagagtt  5647800                    --------->AHL20(1)                                       --------->ALFIN1                   --------->YAB1                              <---------YAB1<-----------RAV1(1)                   --------->AHL20(2)                    ------------>CBF    <---------AtMYB61             --------->YAB1                            --------->ANAC46  <---------ZAT14            <---------YAB1                             --------->ANAC58  <-------GAMYB          --------->YAB1   <---------ANAC46            --------->ANAC58 <-----------RAV1(1)         -         <---------YAB1    <---------ZAT6           <-------TEIL        --------->ALFIN1            -        <-----------TBP<---------YAB1              --------->CCA1(2)<---------ANAC58              --- ---------ZAT6  --------->YAB1                    --------->ARR14(2)<---------ANAC46   <---------MYB52(1) -------ANAC58  <---------ICU4                    <---------ARR14(2)<---------ANAC58  <-----------HVH21 -------ANAC58 <---------YAB1            --------->CCA1(2)--------->AtMYB61<---------ANAC46  -------- -------ANAC46 --------->ICU4--------->ALFIN1    <------ZmHOX2a(1) <-------TEIL       <-------GAMYB -   gagtgtgagtttttataataataatattagtgtggaagagaagagatgggaggatacacaccaatacgattcgtgtgttgtggtgctccgttacacaacg  5647900                                                                                                    <                                                                                                   xx                                                                                                   <x                                                                                                  <xx                                                                                                  xxx                                                                                      <xxxxxxxxxxxxxx                                                                                   xxxxxxxxxxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                               <xxxxxxxxxxxxxxxxxxxxx                                                                               <---------AHL20(2)<xxx                                                                       <---------AHL20(1)        xxxx                                                                     <---------AHL20(1)          <xxx                                                                  --------->AHL20(2) xxxxxxxxxxxxxxxx                                                       <---------YAB1--------->AHL20(1)          xxxx            --------->AHL20(2)                        <---------AHL20(1)  <---------AHL20(1)   <-----            --------->ATHB51  ----------->GT1         <---------AHL20(2)  <---------AHL20(2) --------      ------->GAMYB      <---------TOE1(3)            --------->AHL20(1)  --------->AHL20(2) --------   --------->MYB52(1)   ---------->DOF2              --------->YAB1  <---------AHL20(2)     <xxxxxxxx -------->ANAC46      <---------AHL20(2)             --------->AHL20(2)--------->AHL20(2)   <xxxxxxxx -------->ANAC58--------->AHL20(2)                   <---------AHL20(2)--------->AHL20(1)<---------YAB1 ------>CCA1(2)<---------AHL20(2)       <---------AHL20(2) <---------AHL20(2) <xxxxxxxxxxxxxxxxxxxxxx ->MYB52(1)--------->ICU4<---------TOE2(3)    ----------->GT1  --------->YAB1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) -------->ANAC58<---------AHL20(2)     --------->AHL20(2)  --------->AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)   atacacaacgggaataatttatattttaaagttagtatatataaaattttgtaaattatatttatttataaaatattttattttatagtttacaattgtt  5648000                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                           <xxxxxxxxxxxxxxxxsmallRNA(s)                           <xxxxxxxxxxxxxxxxsmallRNA(i)                           >>>>>>>>>E2Fc                           >>>>>>>>>E2Fd                          <xxxxxxxxxxxxxxxxsmallRNA(s)                          ------>NtERF2                          <xxxxxxxxxxxxxxxxsmallRNA(i)                         --------->ANAC58                         <xxxxxxxxxxxxxxxxsmallRNA(i)                         --------->ANAC46                        <xxxxxxxxxxxxxxxxsmallRNA(i)                       --------->SPL7                   <xxxxxxxxxxxxxxxxsmallRNA(s)                   xxxxxxxxxxxxxxxx>smallRNA(s)                  xxxxxxxxxxxxxxxx>smallRNA(s)                  <xxxxxxxxxxxxxxxxsmallRNA(i)                  xxxxxxxxxxxxxxxx>smallRNA(i)             <xxxxxxxxxxxxxxxxsmallRNA(se3)             <xxxxxxxxxxxxxxxxsmallRNA(s)             <xxxxxxxxxxxxxxxxsmallRNA(i)             <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            <xxxxxxxxxxxxxxxxxsmallRNA(si3)            <-----------HVH21           ------>ZmHOX2a(1)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          <xxxxxxxxxxxxxxxxsmallRNA(s)         <xxxxxxxxxxxxxxxxsmallRNA(i)        xxxxxxxxxxxxxxxx>smallRNA(i)       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      xxxxxxxxxxxxxxxx>smallRNA(s)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    xxxxxxxxxxxxxxxx>smallRNA(s)<xxxxxxxxxxxxxxxxsmallRNA(s)    <-----------GT1xxxxxxxxxxxxxxxx>smallRNA(i)    --------->MYB52(1) <xxxxxxxxxxxxxxxxsmallRNA(s)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  xxxxxxxxxxxxxxxx>smallRNA(s)<xxxxxxxxxxxxxxxxsmallRNA(s)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxx>smallRNA(s) <---------ALFIN1 --------->ANAC55(2) <xxxxxxxxxxxxxxxxsmallRNA(i) <---------ANAC55(2) <-----------HVH21 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)   --------->LBD16 xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    <---------ANAC46 xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   <---------ANAC55(2) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   ----------->GT1 xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <-----------HVH21 xxxxxxxxxxxxx>smallRNA(i)--------->LBD16 xxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxsmallRNA(i) xxxxx>smallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxx>smallRNA(i2) <xxxxxxxxxxxxxxxxsmallRNA(s)                         --------->YAB1 xxxsmallRNA(i2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        <---------TOE2(3)               ------ xxsmallRNA(l2)  <xxxxxxxxxxxxxxxxsmallRNA(s)                  <---------YAB1                  <----- xxxsmallRNA(si3)<xxxxxxxxxxxxxxxxsmallRNA(i)                 <---------AHL20(2)               ------ xsmallRNA(i2)xxxxxxxxxxxxxxxx>smallRNA(s)                    --------->AHL20(2)               ------ xxxxxxxxxxxxxxxxxxxxsmallRNA(i2) --------->ANAC46       --------->AHL20(1)           <xxxxxxxxxxxxxx xxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxsmallRNA(s)    <---------AHL20(1)          xxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxsmallRNA(i) --------->YAB1       <xxxxxxxxxxxxxxxxx xxxxx>smallRNA(se3)--------->ANAC46 <xxxxxxxxxxxxxxxxsmallRNA(i)      --------->TOE2(3)  <---------YAB1 xxxxxxxxxxxx>smallRNA(s)--------->ANAC58                <---------AHL20(2)        xxxxxxxxxxxxxxxxxx ----YAB1<xxxxxxxxxxxxxxxxsmallRNA(s)--------->SPL7   <---------AHL20(2)        --------->YAB1------- ->YAB1<xxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->ANAC55(2)  <---------YAB1<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --->GT1xxxxxxxxxxxxxxxx>smallRNA(s)<xxxxxxxxxxxxxxxxsmallRNA(s) --------->YAB1<---------YAB1 <------ xxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)--------->TOE2(3)xxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxsmallRNA(s)--------->AHL20(2)  --------->YAB1 xxxxxxxxx xsmallRNA(si3) <xxxxxxxxxxxxxxxxsmallRNA(i)        <---------YAB1    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   attaagtaacgtcctgtcaaacccgtcccgccaaacccgtcccgtaaaaaaactattattttattaatattaatcttatttatgatatgtttatgaatta  5648100       <---------AHL20(1)       --------->AHL20(2)       --------->AHL20(1)      <---------AHL20(2) -->ATHB1                        ------->GAMYB ----ICU4                      --------->ANAC46 --->ATHB12               <---------SPL7 --->ATHB51              <---------ANAC46 xxxxxxxsmallRNA(si3)   --------------->AtSPL8 xxxxxx>smallRNA(le3)   <---------------AtSPL8                                                      - xxxxxxsmallRNA(se3)    --------------->AtSPL3                                     <xxxxxxxxxxxxxxxxx xxxx>smallRNA(se3)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                    <---------ANAC58 <--- -->ICU4            --------->ALFIN1<---------ALFIN1                            <---------ANAC58 <--- ---ATHB51        <-----------RAV1(1)                  >>>>>>>>>GT-1      <---------AHL20(2)    <---- xxxx>smallRNA(se3) <---------------AtSPL8          ----------->GT1      --------->AHL20(2)    ------ xxxxxxxxxxxxx>smallRNA(si3)<-------TEIL     --------->TOE2(3)           <---------AHL20(2)   -------   ttgtctaaatattttagttgatgtgggacgtacaactcacacattttcgtcaattggttaatatatgctcattttttaaatttcgagtcacaaaatatga  5648200                                         ----------->GT1                                         <---------YAB1         <-----------GT1            <---------RVE1(1)          --------->YAB1     <---------AHL20(1)               <---------TOE2(3)            <---------CCA1(1)         --------->ICU4      --------->AHL20(2)              <---------ICU4         <---------TOE2(3)          --------->YAB1        --------->AHL20(1)              --------->YAB1 --------->DOF2            <---------ARR11(3)          --------->YAB1                  --------->YAB1 xxxxxxsmallRNA(si3)       --------->AHL20(2)       --------->YAB1                   <---------YAB1 ------ANAC55(2)           <---------AHL20(1)   <---------AHL20(2)                   --------->AHL20(2) ------ANAC46              --------->AHL20(1)   --------->AHL20(2)                   <---------AHL20(2) -----LBD16<---------ARR11(3)   <---------AHL20(2)  <---------ICU4             <---------AHL20(2) --->MYB52(1)      <-----------GT1 <---------AHL20(2) <---------YAB1           --------->AHL20(2)   - ---->HVH21--------->ARR11(3)  --------->AHL20(2)  --------->ICU4  <----------DOF2  --------->TOE2(3)   cggaaagaattgagattttttaaactctatatattatataatgatgttaaaaaattatgatatattaaactttttataagtttaaatattaataatgttt  5648300  Previous    Next  AGI:  At5g17165.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G03150.1); similar to seed specific protein Bn15D1B [Brassica napus] (GB:AAP37967.1) Range:  from: 5643120    to: 5647785    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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