Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100            --------->MYB46(3)          <---------ATHB12         ------>MYB46(1)         ------>MYB83       ------->GAMYB       --------->AtMYB61                                                            <---------MYB52(1)       --------->MYB46(3)                                                  ------>ZmHOX2a(2)      --------->DEAR3(2)                                                  <------ZmHOX2a(2)      <---------MYB52(2)                                                 --------->ARR14(2)      <---------MYB55(2)                                                 <---------AGP1<---------ANAC55(2)      --------->MYB46(3)                                                 --------->ARR11(3)     --------->ANAC58                                                    <---------ARR14(2)     --------->ANAC58                                                    --------->AGP1--------->ANAC55(2)     --------->ANAC46                                            ------>ZmHOX2a(1) --------->TOE2(3) ------->At4g35610                                               =================HOX2a_HOX2a --------At4g35610                                               ================HOX2a_HOX2a --------->RAV1(2)                                <---------ANAC58       <---------ARR11(3) ---bZIP60(1)                             <---------ZAT6      ------>ZmHOX2a(1)   ----------->GT1 <-- -->bZIP60(1)                       ----------->RAV1(2)       ====================HOX2a_HOX2a  <----- ->HVH21 -------->P     >>>>>>>>>MYB2--------->TOE2(2)        ===================HOX2a_HOX2a   ------ -HVH21<---------MYB111(1)    --------->YAB1      <---------ANAC58      <---------CCA1(2)  ----------   catctgcaaccaaccagtctatggaaaaccaaaaataaacctgagtgttcgttcttgcattatcctcctaaatcagatctaaaatcgttaagtaaaagtt  5615700                                                                                           <---------ATHB12                         ------>ZmHOX2a(1)                                                ------>MYB83    --------->ANAC58    --------->TOE2(3)                                                 ------>MYB46(1)    --------->ANAC58   ------>ZmHOX2a(2)                                          --------->ANAC46    --------->ANAC46  <------ZmHOX2a(2)             <------NtERF2                 --------->ANAC58  --------->MYB52(1) --------->ARR14(2)           --------->ALFIN1                --------->ANAC58 -------HSFB2a(2)    --------->ARR11(3)        <---------AtMYB61           --------->ARR11(3) ----ARR14(2)        <---------ARR11(3)        --------->DAG2              <---------ARR11(3) --->ARR14(2)        <---------ARR14(2)       --------->SPL7               --------->AHL20(1) >DOF2             ----------->ARR10   --------->At4g35610                --------->AHL20(2)   ctgcaaacggaagaacacacctagatcctaaaaacaacatcagaagcgtaaggtggctcatcgattcgaaactcaaatatatccaagaaaccaatcgttt  5615800                                                                --------->AHL20(2)                                                                --------->AHL20(1)                                                               <---------AHL20(2)                 <-----------GT1                               <---------ATHB51   --------->ANAC46                 --------->YAB1                                --------->AHL20(2) --------->ANAC58              --------->YAB1                                   --------->ICU4 --------->ANAC58         <------NtERF2                                  <------MYB83---------->DOF2     --------->ANAC58   --------->CCA1(2)               ----------->GT1       --------->ANAC58     --------->ANAC46  --------->AHL20(1)               <------MYB46(1)     ---------->DOF2  <-------     --------->ANAC58  <---------ARR11(3)     --------->MYB52(1)<---------AHL20(2)--------->ANAC58   tgcacacaggcctcaagaataacaatatatgaactactagcattaacttaacagagattggtgaaataatttaagcgcaaaagcaagcaagagtgatgaa  5615900                                                                                             <-------                                                                                            <--------                                                                                           --------->RAP2.6(2)                                                                                           --------->RAP2.3(2)                                                                                           --------->RRTF1(3)                                                                                 <---------ANAC58                                                                                 <---------ANAC46                                                                                 XXXXXXXXXXXXXXXXXXXX                                                                            ----------->RAV1(2)                                                                      <---------ANAC46     --------->RAP2.3(3)                                                                      <---------ANAC58     --------->DEAR3(1)                                                                      <---------ANAC58  --------->ANAC58                                                                     <------NtERF2  --------->WRKY38(1)                                                                   <---------DEAR3(1)   --------->ANAC46                                                                  <---------ORA47(1)--------->WRKY12                                            --------->ARR14(2)    --------->RAP2.6(3)   --------->ANAC58                                            <---------ARR14(2)   <------ZmHOX2a(1)<-------GAMYB      <---------GLK1(1)                     <---------GLK1(2)    ==================HOX2a_HOX2a-------      --------->GLK1(1)                 <---------LBD16    <---------HSFB2a(2)   <---------ANAC58      --------->CCA1(2)                --------->MYB52(1)  --------->HSFB2a(2)------>ZmHOX2a(1)------     --------->ARR11(3)               --------->TOE2(2)   <---------LBD16   ------>ZmHOX2a(2)<------NtERF2     <---------ARR11(3)        --------->ANAC58          <---------LBD16  --------->ARR11(3)------>NtERF2 ---------->DOF2               --------->ANAC58      <---------ARR11(3)   <---------ARR11(3)<-------- --YAB1        --------->MYB52(1)    --------->YAB1  --------->ARR11(3) ----------->HVH21 --------->RAP2.3(1)   aatcaaagatatcagagtaacgagaagagaaggaagcaaacatacggatgctcaagaacttcgggaaggacggcgtgatcctggcgttgaacgccgtcat  5616000             --------------------->WRI1            --------->ATHB12          <-----------HVH21   --------->ATHB12          ------>NtERF2    --------->RAP2.3(2)         --------->DEAR3(1)--------->RAP2.6(2)                                 <---------ARR14(2)         --------->RAP2.6(2)<---------RAP2.6(3)                                <---------GLK1(2)         --------->RRTF1(3)--------->RAP2.3(3)                                 --------->ARR14(2)        --------->RAP2.3(1)--------->DEAR3(1)                               <---------ANAC46      --------->ANAC46     --------->RRTF1(3)                            ----------->TGA1      --------->ANAC58    --------->RAP2.3(1)                 --------->HSFC1(2)      --------->ANAC58  --------->ANAC58                <---------LBD16--------->YAB1     ------->TEIL       --------->ANAC46             --------->ARR11(3)<---------ICU4<---------------AGL15 --MYB52(1)<------NtERF2--------->ANAC58            <---------GLK1(1) --------->ICU4 --------------->AGL15 -RAP2.6(3)<---------MYB52(1)<------NtERF2  <---------LBD16   <---------HSFC1(2)    ----------------- >MIR4228--------->RAP2.3(3)------>NtERF2  --------->MYB52(1) <---------HSFB2a(1)   <---------------- -->ATHB12<---------RAP2.6(3)<---------MYB52(1)     --------->GLK1(1) <---------ATHB12 --------------->WRI1  ------->TEIL       ----------->HVH21   --------->HSFB2a(1) <-----------GT1 ---HVH21--------->RAP2.3(2)<-----------HVH21     <------ZmHOX2a(1) <---------At4g35610   tgggatgaacgccgtcattgggatgaacgccgtcattgggatgaacgacggaggaaatctcggaagtttccgatgatgacggattctccatttttggttt  5616100                                            ----------->GT1                                          <---------LBD16        <---------ARR14(2)                                         *TSS                    --------->ARR14(2)                                  --------->LBD16                <---------ARR11(3)                                 --------->ANAC46                --------->ARR11(3)                                 --------->ANAC58         ---------->DOF2                   ---------                                 --------->ANAC58      ----------->GT1                  <---------ETT(1)                                <---------LBD16       --------->MYB59  ------------>CBF ----------->HVH21                              <---------ARR14(2) <---------AHL20(2)   <-----------GT1  --------->DEAR3(2) >AGL3                        --------->ARR14(2)--------->AHL20(2)<---------RVE1(1)    --------->MYB46(3) -AGL3 <-----------GT1   --------->At4g35610--------->LBD16     <------ZmHOX2a(1)  ----------->HVH21   cagagcgattttcaattttgctcaaatagctgaatccgcaattcgccggataaaattcggtaaagaggattttttcaattttgctctgacccgacccgac  5616200                     <---------ARR14(2)                  ------>ZmHOX2a(2)                 <------ZmHOX2a(2)                --------->ARR14(2)                                                              <----                <---------ARR14(2)                                                              <----        --------->ANAC55(2)                                                               <---------AHL20(2)        <---------ANAC55(2)                                                           <---------RVE1(1)      <-----------------AGL1          ---------->DOF2                                 <---------CCA1(1)   ----------->HVH21 --------->ARR14(2)                        <---------ANAC55(2)   --------->ARR11(3) >DEAR3(2) <------------CBF   --------->LBD16   <---------AHL20(2)--------->REM1(2)  <---------ARR11(3)   tcgactcgacccgtattggatccgattcgacccgagcatgtaatgcgcattttatatgcgagaaaacgtgaagaccaaaatatagtagatattttttggc  5616300                                     -------->ATHB1                                     --------->ATHB51                                     --------->ATHB12                                     <---------ICU4              <---------ZAT6        --------->ICU4          <<<<<<<<<MYB98  --------->AHL20(2)                                                   <-----   --------->ATHB12      --------->AHL20(2)    <---------TOE2(3)                         ---------->DOF2 <----------DOF2       --------->TOE2(3)    <<<<<<<<<MYB98  --------->KAN4(1)         --------->TOE2(3) -----ANAC58 <---------TOE2(3)      <---------YAB1         <---------YAB1      --------->REM1(1)----- -----ANAC58 <---------TOE1(3)---------->DOF2  <---------TOE1(3)--------->ATHB12--------->TOE2(3) <--   ctgcgttattgggttagggttagaacattaaaaaaagaattattgggttagggtttagaagattattcatttgtttggcctacattaaacttaaagtatg  5616400                                         <---------ZAT6                                      -------->ATHB1    <---------AHL20(2)                --------->ATHB51  <---------RVE1(1)                   <---------ICU4 --------->ARR11(3)                  <---------YAB1                                                 - <---------ARR11(3)                  --------->ICU4                                   ----------->GT1 <---------GLK1(2)           --------->ANAC46                                   --------------->AGL15 ----YAB1               <---------------AtSPL8                                  <----------DOF2   --- ------>GT1             <---------------AtSPL3       ---------->DOF2---------->DOF2   <---------TOE2(3) ------P  <-----------GT1 <---------SPL7<---------YAB1    ----------->GT1       <---------------AGL15   gtagattttttttttctggtcttgtagttgtacgagaccattattgttagaaaataaaagttgaaaaaactaaagacgttttctttttaagttaaaaaca  5616500          --------->YAB1                                                                   ------>NtERF2        --------->AHL20(2)             <---------ALFIN1                                   --------->WRKY45       --------->YAB1                 <---------REM1(2) ------>ZmHOX2a(1)                 --------->WRKY12      --------->AHL20(2)        <----------DOF2         <----------DOF2                   -----------  --------->AHL20(2)         <-----------GT1        <---------ARR14(2)  --------->ANAC46  --------->WRKY38(1) ---------->GT1        <---------GLK1(2)            <-----------GT1     --------->ANAC58<---------At4g35610 ------->DOF2---------->DOF2 <---------AHL20(2)     --------->ARR14(2)  --------->ANAC58--------->At4g35610   aaaagaaaataaaaataaagtttcagattattttcttttctacacacttgatagtatccttttcattttgtctcacaccatttgtccagtcgctgaccaa  5616600  Previous    Next  AGI:  At5g17070.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO62204.1); contains domain PTHR16487 (PTHR16487) Range:  from: 5613371    to: 5616141    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version