Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                         --------->ATHB12                                                      <---------YAB1                                                     <---------TOE2(3)                                               <---------YAB1                                             -------->ATHB1 <---------ANAC58                               --------->ARR14(2)   --------->MYB52(1)                               <---------GLK1(2)<-----------GT1                    --------->CCA1(2)        --------->ATHB51                           --------->TOE2(3)                   --------->ARR14(2)        <---------ICU4 <---------ANAC58<---------RVE1(1)                   <---------ARR14(2)       <---------ATHB51<---------ANAC46<---------CCA1(1)        <------MYB46(1)<-------TEIL         --------->ICU4 <---------MYB46(3)        <---------ALFIN1       <---------TOE1(2)       <---------ARR14(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)  --------->TOE1(3) -->TEIL<------MYB83--------->GLK1(1)       --------->AHL20(2)             <---------ARR11(3)      <- ------>AtSPL8    <------ZmHOX2a(1)         <---------AHL20(2)             --------->ARR11(3)      --   cttaaattgtaggtatgttaggatatacattcggatactggttcaaattattactaacgattgggtgttcaaattcagatattatgcacaccttaaattc  5610400                                                              --------->YAB1                                                   --------->TOE2(3)                                                  --------->ATHB12                                                  --------->YAB1               <---------YAB1  <---------AHL20(2) <---------ICU4 --------ARR14(2)    ---------->DOF2             <---------ATHB12                     <-----------GT1 ------->ARR14(2)   --------->YAB1               --------->ICU4 --------->ZAT6    <----------DOF2   aaatccacaaattgtttatcaataaaagtatattttaagatggattttgaaatcattagttcaataacactgaatttcatgagactttttaaaatccatg  5610500                                                                                   <-----------GT1                                                                               <---------YAB1                                                                         <---------YAB1                                                                        --------->AHL20(2)                                                                    <---------RVE1(1)                                                                    <---------CCA1(1)                                                                   <---------AHL20(1)                                                                   --------->AHL20(1)                                                         <---------At5g28300 ----------->GT1                  <---------AHL20(2)                    <-----------GT1 <---------AHL20(2)                  --------->AHL20(2)            <----------DOF2    --------->ARR11(3)       --------->TOE2(3)<-----------GT1      <-----------GT1       <---------ARR11(3)    <---------YAB1   tttgaataacattagatttataaattttacacaaatctcttaaaatttcactttcaatttaccccctaagatattaaaattgttattacttctgattttt  5610600                               <------MYB83                               <------MYB46(1)                               ----------->GT1                              --------->MYB55(2)                              --------->MYB111(2)                              <---------MYB46(3)                              --------->MYB46(2)                              --------->MYB111(1)                             <--------P                             <---------MYB55(1)                           <------MYB46(1)                           <------MYB83                          --------->MYB46(2)                          --------->MYB55(2)                          --------->MYB59                          --------->MYB111(2)                          --------->MYB111(1)                                                --------                          <---------MYB46(3)                                                 ------>MYB83                          <---------AtMYB61                                                  ------>MYB46(1)                         <---------MYB55(1)                                                  <-------                        <---------MYB52(1)                                  --------->AHL20(2)                      <---------ANAC58                                ------->GAMYB         ---------                      <---------ANAC46           ----------->GT1    ------>MYB83--------->DAG2      -                      <---------ANAC58           <---------ZAT6     ------>MYB46(1)        --------->AtMYB61                   <---------MYB52(1)   <-----------RAV1(1)         -------->P ---------->DOF2  <----   gactcaatactcactgaattcgtttcgtttggtaggtgatatatgtggctattgttaaaccgagcctgccaacccaaaataaaaagttagaaaccaatcc  5610700                                                                          --------->AHL20(1)                                                                       --------->AHL20(2)                                                                       <---------AHL20(2)                                                                     --------->AHL20(2)                                                                  <---------AHL20(1)        ----------->GT1                                           <---------AHL20(2)    --------->ATHB12                       <-----------GT1        --------->AHL20(2)    --------->ATHB51                  <---------AHL20(1)         <---------AHL20(2) ->ARR14(2)          <------NtERF2 --------->AHL20(2)            --------->AHL20(2) --ARR14(2)       --------->At4g35610 --------->AHL20(1)        <---------YAB1 >WOX13(1)        <---------At4g35610 <---------ARR11(3)      <--------HAHB4 ---------------->AGL3 ---------->DOF2--------->ARR11(3)     <---------YAB1<---------AHL20(2) -----ETT(1) <------------CBF ----------->GT1              <---------ZAT6 <---------AHL20(1)   gacccattatttgtaaattgggctgcaaagcctagaaaaaaatattcactattttgcgatagtattattaaatttatatatttgagaaaatgagagaatg  5610800          --------->AHL20(2)       <-------GAMYB          <---------AHL20(2)       --------->LBD16          --------->AHL20(1)  --------->KAN4(2)                                        <-----------GT1         *TSS   ---------->DOF2   <---------ANAC46            ------>ZmHOX2a(1)     --------->ATHB51         --------->AHL20(2)  <---------KAN4(1)           <---------GLK1(1)          <---------ICU4         <---------AHL20(2)  <----------TaMYB80          --------->GLK1(1)          --------->AHL20(2)        <---------AHL20(1)   --------->KAN4(1)        ------>ZmHOX2a(1)             <---------AHL20(2)       --------->YAB1       ------->TEIL              --------->LBD16              <---------AHL20(2)  ----------->GT1        <---------YAB1             ----------->RAV1(2)     ----------->GT1   gtggaagtaaaataatttgaaaggaatatgaatattccgttgaagaagacttgctcctgaaatcctttggaccgaaactcgtaaaattatttcccttcaa  5610900                                                              <---------At4g35610                                                           <------NtERF2                                                --------->KAN4(2)                                               --------->HSFB2a(1)                                               --------->HSFC1(2)                                               ------>ZmHOX2a(2)                                               <---------HSFB2a(1)                 <----------DOF2                                 ------>ZmHOX2a(1)       <---------DEAR3(1)        <---------DAG2                            ---------->ID1     =============HOX2a_HOX2a           <---------ANAC58                 --------->DEAR3(1) ------>ZmHOX2a(1)------>ZmHOX2a(1)            <---------ANAC58               <---------At5g28300  ==================HOX2a_HOX2a            --------->ATHB12              <-----------GT1    =====================HOX2a_HOX2a           <---------YAB1      --------->GLK1(1) <----------DOF2        <---------MYB46(3)    <-----------GT1   tttctctgaaatctattcaccgtctcctttgtctcctcctccaaatcgatcgttcctcgtcgtcgtctgattttctctacgattgctttttctgtctagc  5611000                                                                          --------->ANAC58                                                                          --------->ANAC58                                                                      <---------ANAC58                                                                      <---------ANAC58                                                                  <---------DAG2                    -                                                                  <----------DOF2                  <-                                                            --------->WRKY18(1)                   ---                                                           <-----------HVH21                      ---                                                         <---------MYB46(3)                      ----   tcgataagataaaacaaaactaatttttgaagagtttttttttttgggtttgggagcgatgggtcaagcttttcgtaagctattcgatactttcttcggc  5611100                                                      <---------ANAC46                                                      <---------ANAC58                                                      <---------ANAC58                                                    ------>ZmHOX2a(2)     --------->CCA1(2)                             <------ZmHOX2a(2)  --------->ANAC58                                 <---------GLK1(1)  --------->ANAC58                                 --------->GLK1(1)                               == -------->YAB1                                    <---------ARR14(2)      --------->ATHB12         <- --------ATHB12              <---------ANAC58     --------->ARR11(3)   ============================== ------>ANAC58               <---------ANAC58     <---------ARR11(3)   <----------DOF2        ------- ------>ANAC58          --------->At4g35610       --------->ARR14(2) <---------YAB1          -------- ----->WOX13(1)       <---------ICU4     <---------LBD16          ---------->ID1   <---------AtMYB61   aatcaagaaatgagggtaatctcatcatctctcgtgctatttatctggatgggatctcgtgtaattttgtcatctttgatttgttttggttttagtcata  5611200                                                                                 <---------ARR14(2)                        <---------TOE2(3)                                        --------->ARR14(2)           ====================bZIP_DOF                                          <---------GLK1(2) ====================bZIP_DOF                                                 --------->HSFB2a(2)   - ---------DOF2 ----------->HVH21                      <----------DOF2         <---------HSFB2a(2)  <- ====================bZIP_DOF            <---------ARR14(2)                  <---------LBD16   ------ -------------->WRI1<----------DOF2      --------->ARR14(2)        <---------ANAC58            <----- ->YAB1    --------->TGA1a   <---------LBD16    ---------->DOF2    <---------ANAC58            <-----   gcttttatcgcccatgtctgacctttgatgtttcggaattttggatttggaaaagactttataactcaagcttgtgttttctggattcttctctattacg  5611300  Previous    Next  AGI:  At5g17060.1    Description:  ATARFB1B; GTP binding. similar to ATARFB1C (ADP-ribosylation factor B1C), GTP binding [Arabidopsis thaliana] (TAIR:AT3G03120.1); similar to ADP-ribosylation factor [Daucus carota] (GB:AAW67545.1); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Small GTP-binding protein; (InterPro:IPR005225); contains InterPro domain ARF/SAR superfamily; (InterPro:IPR006689); contains InterPro domain ADP-ribosylation factor; (InterPro:IPR006688) Range:  from: 5610809    to: 5613068    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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