Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     <-     <---------ANAC58                                                                  <---------ATHB12     <---------ANAC58                                                          --------->YAB1    ---- ---MYB52(1)                                                                   ----------->GT1   <--- -ANAC58        <---------ZAT18                                           <---------DAG2 ----------->GT1 >ANAC55(2)     --------->ZAT14                                           --------->TOE2(3)     ----- -ANAC58    <---------------AtSPL8                                        --------->TOE1(3)  -------- -ANAC46    --------------->AtSPL8             <-------TEIL     --------->MYB52(1)   --------->WOX13(1) -GT1<---------ANAC46    <---------YAB1<-----------GT1---------->DOF2   ------->TEIL--------->MYB46(3)   tgtcattgtgtgtaatagtactctcttgttatagtttatatttactatatacatgtaaaagaaaaaaaacgatgaaccttattgtaacaatcagttaaat  5568000                           <---------AHL20(1)                           <---------AHL20(2)                          --------->YAB1                         <---------YAB1                         ----------->HVH21                       --------->YAB1                   --------->AHL20(2) --------YAB1        <----------DOF2                    <---------AHL20(2)                          - ----->YAB1         --------->TOE2(3)                   --------->ATHB12        --------->ZAT14   --- ------ICU4  <---------AHL20(2)                         --------->ATHB51    XXXXXXXXXXXXXXXXXXXXX>MIR833-5P ---->ICU4  <---------AHL20(2)                  ------>ZmHOX2a(1)  --------->MYB46(3)  ------>NtERF2< ->AHL20(2) --------->AHL20(2)    <----------DOF2      <---------AHL20(2)<----------DOF2     <-------   tatgagtttagtttttaaatttcctttataatatttctttagagactttcctccaaaattatttgtctgacaaccctttcattgtactcggcctggttag  5568100                                                                                    --------->AHL20(2)                                                                         <---------YAB1                                                        <---------AHL20(2)   --------->AHL20(2)                                                        --------->AHL20(2)   <---------AHL20(2)                                                     --------->AHL20(1) <---------AHL20(1)                                                ----------->GT1       <---------YAB1<---------AHL20(2)     --------->YAB1                            <---------TOE2(3)     --------->AHL20(2) -------->AHL20(2)                             <---------YAB1--------->AHL20(2)    --------->AHL20(2) ------>CCA1(2)<---------YAB1                --------->YAB1  <---------AHL20(2)  --------->YAB1 ---------AHL20(2)            --------->ANAC55(2)    <---------ARR11(3) --------->AHL20(1) -P <---------AHL20(2)      <-----------GT1 <---------YAB1--------->YAB1<---------AHL20(2)       ----   atataaataataaacttatgcttacaagttttacatgatactatctattatggtatatattaataaaacaatattatatttaaaaataaatcacacaaat  5568200                         <---------AHL20(2)                        --------->AHL20(2)                                                <---------AHL20(2)                   <---------DAG2                                                     <---------AHL20(2)         --------->AHL20(2)                                     ----------->GT1       --------->AHL20(2)         <---------AHL20(2)                                  <----------DOF2         <---------AHL20(2)        --------->AHL20(2)   --------->YAB1               <-----------GT1  --------->ANAC58        <---------AHL20(2)  <---------YAB1             --------->YAB1      --------->ANAC46 ----->AHL20(2)    <----------DOF2                    --------->ICU4       --------->ANAC58        --   tatacactaaaaaaatttgaactttataaaatgataacttatttttctaaaatgaaattataacttttgttaaaaacaagaaacaaaattatttaaaacg  5568300                                                               ---------->DOF2                                                             ------>ZmHOX2a(2)                                                            --------->CCA1(2)                                                            <------ZmHOX2a(2)                                                           <---------ARR11(3)                                          <---------ANAC46 --------->ARR11(3)                             <---------ARR14(2)            <---------ARR14(2)                          <---------ANAC55(2)       ------>MYB46(1)                          --------->ANAC55(2)     --------->DEAR3(1)                       --------->WRKY18(1)----------->GT1  --------->ARR14(2)                <---------ARR14(2)    <------------CBF     --------->AGP1                --------->ARR14(2) ------------>CBF ------>MYB83                                -----           <---------ANAC46  --------->ARR14(2)  --------->DEAR3(2)  <----------DOF2 <----------DOF2 ------->WOX13(1)     <-----------HVH21  --------->MYB59   <---------AGP1       <----------DOF2 *TSS   tctatcaaatgagtcgggtattcgggtcaagtatccagacaattgggtaaaaccgacccaagatctaaagtcttttgttttcctttcctttcgcagagaa  5568400                                                                              ------>ZmHOX2a(1)                                                                --------->ANAC58                                                     <---------ANAC58      ---------->ID1                                                     <---------ANAC58    <---------ANAC58     <------                              ------>NtERF2        --------->ARR11(3)    <---------ANAC58     -------                           ------>NtERF2   --------->ARR14(2)   --------->ANAC58          <----------DOF2 ---->GLK1(1)       <----------DOF2        <---------ARR14(2)   --------->ANAC46        ------>ZmHOX2a(1)   accctactaaaacctttggcaactttctctgcctccatttctatggattcgaatttcttgttcatcaagccaatttcgtcctcttaaatcctctttacac  5568500                                                                       <----------ID1               <                                                                      <------ZmHOX2a(1)           <--                                                                   --------->HSFB2a(2)            <--    <-----------GT1                                                <---------HSFB2a(2)           <--- -----GT1                                                          <---------LBD16               <--- -->ANAC46            ----------->GT1                          <----------DOF2               <-------   caatttttaaaatccccttaaaatcggtaagaaccctagtctattctctcttcatttctcattccctttcgaggagacaaatggctcagaaaattgcgat  5568600                                                    <---------At4g35610                                        <------NtERF2                                      <---------ANAC46                                      --------->RAP2.3(3)                                      --------->RRTF1(3)                                      --------->RAP2.3(2)                                     --------->RAP2.3(1)                    --------->ATERF1(1)------>NtERF2<---------ZAT2      ------>ZmHOX2a(2)              --------->DEAR4(2)   <---------At4g35610    <---------ARR11(3)   <---------At4g35610 --------->ARR14(2)------->TEIL    --------->ARR11(3)------>NtERF2  <------NtERF2  --------->At4g35610 ---------ANAC46   <---------ATERF1(1)--------->DEAR3(1)  --------->At4g35610 ----MYB46(1)      ------>NtERF2     --------->ATERF1(1)<-----------RAV1(2) ----MYB83      --------->ZAT2       --------->ERF1 --------->ZAT2<----------DOF2<---------ANAC58   < ------MYB46(3) <---------ZAT2       --------->RRTF1(1)<---------At4g35610       <---------ANAC58   - ------AtMYB61  --------->At4g35610 ------>NtERF2  =================RAV <---------DAG2           <--- --YAB1         <---------At4g35610--------->ANAC46<-----------RAV1(1)  <----------DOF2<---------ALFIN1   tggtgtgatctcagccctagctgcctccgcttctctcgcgccgtcgaaattcgctgctgcagatggacctttcactttctctggcttctccacttctccg  5568700                                      ------>NtERF2                                     --------->DEAR3(1)                                     <---------DEAR3(1)                                     <---------ANAC46                                    --------->RAP2.3(1)                                    --------->ATERF1(1)                                    <------NtERF2                                   <---------RAP2.3(1)                                   --------->LBD16                                   ------>NtERF2                                   <---------ATERF1(1)                                  <---------DEAR3(1)                                  --------->DEAR3(1)                         --------->ARR14(2)                                  <---------ATERF1(2)                     ----------->ARR10                                  --------->ATERF1(2)                  <---------ANAC46                                  --------->RAP2.3(2)                 <------NtERF2                                 --------->ATERF1(1)                 ------>NtERF2                                 --------->ERF1                     --------->ATERF1(2)                                 --------->RAP2.3(1)                <---------ATERF1(2)                                <---------ATERF1(1)                <---------ANAC46                                ------>NtERF2                      <---------ANAC58                     --------->HSFC1(2)     --------->GLK1(2)      <---------ANAC58              <---------At4g35610--------->ORA47(2)           <---------DEAR3(2)              <---------ZAT2    --------->LBD16               <-----------RAV1(1)               <----              --------->At4g35610<---------LBD16         <---------HSFC1(2)  <---------ARR14(2) -----              --------->ZAT2   --------->DEAR3(1)  ---------->DOF2<---------At4g35610       ------>ZmHOX2a(1)           ------>ZmHOX2a(1)   --------->ANAC46 --------->LBD16<-------GAMYB --------->GLK1(2)  <----          --------->TOE2(3)   <---------LBD16 --------->TOE1(2)<---------At4g35610          <--------       --------->ARR14(2)   --------->ANAC46--------->ARR14(2)--------->MYB52(2)            --------- ---------At4g35610  --------->HSFB2a(1)    <---------ARR14(2)<---------MYB46(3)         ------>ZmHOX2a(1) -------->At4g35610  <---------HSFB2a(1)   <---------GLK1(2)<---------MYB52(1)          <---------ALFIN1 ------MYB52(1)      <---------HSFC1(2)<------NtERF2     --------->HSFC1(2) <---------GLK1(2)--------   tctgcttcgattcctcagcagcaaggttctactccgccggcgtcggaatctgggaaagaaccgtctgttgctggcgaagaatctgatgctcctcctcgga  5568800                                       --------->HSFB2a(2)                                       <---------HSFB2a(2)                                      ==========================HOX2a_HOX2a                          --------->At4g35610                                                 -------                          --------->ZAT2                                                      -------     --------->YAB1       <---------ZAT2--------->LBD16                                  <---------At4g35610 -----GLK1(2)--------->LBD16          ------>ZmHOX2a(2)                                  --------->At4g35610 ---->ARR14(2)            ----------->RAV1(2)                          ---------->DOF2   <---------ZAT2 -----ARR14(2)            <---------At4g35610                ---------->DOF2      --------->MYB46(3) -LBD16      --------->HSFB2a(2)      <---------LBD16    ============================HOX2a_HOX2a >LBD16 --------->YAB1  <-----------RAV1(2)     --------->ALFIN1     ----------->HVH21   --------->ZAT2 ->TOE1(1)   <---------HSFB2a(2)  ----------->ARR10      <------ZmHOX2a(1)    <------ZmHOX2a(2)     -   ttcggaacaataatccgagaacaacttcagctgggtttgatccggaagcgttggagcgaggagcaaaggccttgaaagggatcaacaactcagctcatgc  5568900  Previous    Next  AGI:  At5g16920.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G26730.1); similar to hypothetical protein OsI_036632 [Oryza sativa (indica cultivar-group)] (GB:EAY82673.1); similar to Os12g0233900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066453.1); contains InterPro domain Beta-Ig-H3/fasciclin (InterPro:IPR000782) Range:  from: 5567014    to: 5568131    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g16930.1    Description:  AAA-type ATPase family protein. similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT4G36580.1); similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT2G18330.1); similar to ATPase [Arabidopsis thaliana] (TAIR:AT3G03060.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN78021.1); similar to hypothetical protein OsI_008403 [Oryza sativa (indica cultivar-group)] (GB:EAY87170.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62189.1); contains InterPro domain AAA+ ATPase, core; (InterPro:IPR003593); contains InterPro domain AAA ATPase, core; (InterPro:IPR003959) Range:  from: 5568396    to: 5571862    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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