Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                         <---------ICU4                                                      <---------ATHB12         ----------->GT1                       --------->At4g35610    --------->AHL20(2)                         --------->ZAT2                          --------->MYB46(3)  ==================================================================================MADS_MADS  <---------------AGL15 --------->ATHB12       <---------ZAT2               <---------ARR11(3)  --------------->AGL15<---------YAB1          <---------At4g35610----------------->AGL3   --------->AtMYB61 --->AHL20(2)          --------->ICU4----------->RAV1(2)     <----------DOF2--------->ARR11(3)   ---- ----AHL20(2)---------->DOF2         --------->At4g35610    --------->TOE2(3)<------ZmHOX2a(2)  -----   aacacttaaaatagtaaaagagagcatgattagtttatcacctgcattgagctgcaatctttcctttacccattttaagatcatttctcaccaccaaaac  5548300                                                                  -------->P                                                                 <-----------GT1                                                                <---------MYB111(2)                                                                <---------MYB46(2)                                                                <---------MYB111(1)                                                            <---------MYB59                                                           <---------At4g35610                                                           --------->At4g35610      --------->ANAC46                          ----------->GT1 --------->MYB46(3) --------->HSFB2a(2)   <---------ZAT14                      --------->ZAT6 <---------REM1(1)           <---------HSFB2a(2) ----->TOE2(2)                        --------->MYB52(1)  ------->TEIL        <---------ATHB12 ------>RAV1(2)              <---------YAB1   ----------->GT1   <------------MYB.PH3(2)   ctgagtatacaaaactcaattcaacaattttgtgattccataacagtagagagaaaaatgtagctaactaccatcttgaaatcatcgagaatatcagcga  5548400                                                       --------->RAP2.6(2)                                                     <---------At4g35610                                                     --------->At4g35610                                                    ------->GAMYB                                                   --------->MYB46(3)                                            ------>ZmHOX2a(1)                          <------ZmHOX2a(1)--------->TOE2(3)              <---------DEAR3(1)                  <----------DOF2          --------->TOE1(3)             --------->SPL7             -              <---------ZAT18           <---------ARR11(3)   ----------->RAV1(1)             <-------              <---------ZAT14           --------->ARR11(3)  --------->MYB46(3)          <---------ZAT14              --------->ZAT18          <---------GLK1(1)  ----------->RAV1(1)           --------->ZAT14           <---------ANAC46            --------->GLK1(1)--------->At4g35610  <---------ANAC46--------   gtttctcaatctcgagtggacttttggaggattgagttttgatatccttatcaacagcagcaacaacaggtttggaacggcgagtgccaatgcagtatcc  5548500                               <-----------HVH21                              <---------O2         ----------->RAV1(1)  --------->ANAC58    <---------At4g35610       --------->O2    <---------ZAT2            --------->bZIP60(2)    --------->At4g35610       --------->TGA1a    --------->ZAT2            --------->ANAC46 <---------ZAT14            <---------ALFIN1                                      -------->HAHB4 <---------ZAT18           --------->MYB46(3)                                     --------->ATHB12 --------->ZAT18      --------->ANAC58                                           <---------YAB1 --------->ZAT14      --------->ANAC58                                    ----------->RAV1(1)   <---- -------->ALFIN1   --------->ZAT18                 <-------TEIL        --------->ANAC46         ----- --ARR14(2)        <---------ZAT18     --------->ATHB12   <---------ANAC55(2)    --------->ICU4 ----- ->ARR14(2)    <---------ICU4 --------->ANAC58    --------->CCA1(2)------>ZmHOX2a(1)<---------WOX13(1)   aagtgcagctccaacaattagggcacttaaccacgtcaaatccattggcaagattcaaatacttaaatcctacagacaacaaaatgattgaatttgagta  5548600                                                                     <---------YAB1                                                               --------->GLK1(2)                                                              <---------GLK1(2)                                                              <---------ARR14(2)                                                              --------->ARR14(2)                                                            <---------YAB1             --------->TOE2(3)                              <---------TOE2(3)          <-----------GT1                                   ----------->ARR10                      -- -----ARR14(2)                                            --------->YAB1                           <- ---->GLK1(2)--------->TOE1(3)                   <---------------AtSPL8        ---------->DOF2  ----- ---->ARR14(2)    --------->ANAC46            ---------->DOF2 --------->ARR11(3)         --------->GLK1(2)   tctaaaattgaattacctcaacgtaatctagctcaagtttctacagtagaaagggaacaattaagattctcatcaatggtctaaagaagagaatcgaaga  5548700                                                                  --------->ARR11(3)                                 --------->YAB1               --------->REM1(2)                                --------->ICU4             <---------ANAC58                            <------NtERF2                  <---------ANAC58                           ------>NtERF2                   <---------ANAC46   ----------->GT1                          --------->ARR14(2)           --------->DEAR3(2)     --------->ANAC58           <---------HSFB2a(2)  <---------ATHB12  --------->LBD16 <---------ARR11(3) ------->At4g35610        <---------ARR14(2)    ----------->RAV1(2)           --------->ANAC58     -- --------At4g35610   --------->MYB52(1)*TSS     <---------LBD16 ----------->ARR10                  <- ----->DOF2--------->HSFB2a(2)<---------At4g35610 ------>ZmHOX2a(1)   <-----------GT1             ---   aagcttacgagttcgagagagagaaacggctccgatgatgaagttttttttcctgaaaccggcgtgaagattttactggcaagaaaaaaaaaaaaaaaca  5548800                                                   <---------WOX13(1)                                                   <--------P                                                 <------MYB46(1)                                                 <------MYB83                                               <---------WOX13(1)                                              <------------CBF                                             --------->ATHB12                      <---------ARR11(1)                                          <---------O2                             --------->ARR14(2)                                          <---------ANAC58                         --------->ARR11(3)                                          <---------ANAC58                         <-----------ARR10              <---------AHL20(2)          --------->ANAC55(2)                      <---------ARR11(3)            <---------YAB1           <---------ANAC58                              <---------ARR14(2)          --------->AHL20(2)         <---------ANAC46                             <---------GLK1(1)      ------>ZmHOX2a(2)              <---------ANAC58                             <---------CCA1(2)   -------->HAHB4                    <---------ANAC55(2)                    ---------->DOF2   --------->ATHB12       <---------MYB46(3)<---------YAB1               --------->AHL20(2)  <---------YAB1        <---------MYB52(1)<---------ANAC55(2)         --------->YAB1  --------->ICU4       <-------GAMYB --------->ANAC55(2) ----------->GT1--------->AHL20(2)         -- <---------TOE2(3)    <---------MYB46(3)  <---------ANAC46          --------->AHL20(2)            <-- ------->AHL20(2)     --------->MYB52(2)  <---------ANAC55(1)     --------->AHL20(2)  <----------DOF2 --------AHL20(2)     --------->MYB55(2)------------->DYT1    --------->AHL20(2)  <---------ARR14(1) ------>AHL20(2)     <-------TEIL<------------CBF<---------MYB46(3)--------->YAB1 --------->GLK1(1)<-   tttaatgatcgattattttttggttcgttggatgaaattgcgtaacgtgattggttgatatgaaaaaaataaaaataaaaaagcatatctttttgaaaat  5548900           <---------TOE2(3)                              --------------->AGL15          --------->DAG2                             ------>MYB83                                  --         ---------->DOF2                       --------->ANAC58                                    <-      <---------ANAC58                         --------->MYB46(3)                            <-------      <---------ANAC46                         --------->ANAC58---------->DOF2              <--------      <---------ANAC58             --------->DAG2    ------>MYB46(1)                <<<<<<<<<TBF1 --- ------->ICU4                  <------ZmHOX2a(1)   --------->MYB46(3)            <<<<<<<<<TBF1<------ -------TOE2(3)  ----------->GT1  ---------->DOF2  <---------MYB59    --------->ANAC58      --------- --------YAB1    *TSS --------->YAB1----------->GT1--------->AtMYB61  --------->ANAC58     <------ZmHOX2a(1)   aatgtttagcgtaaaggaagggaaacatagtcaggataaagtaattcccacgaccaaacacttaaaaaaggaacgcagttttcttcttcttcaggatttg  5549000         ------->GAMYB      <---------DOF5.7(2)     <---------WRKY12     <---------WRKY38(1)     --------->ARR14(2)    <------NtERF2            --------->ARR11(3)    --------->DOF5.7(2)      <---------ARR11(3)   ------>NtERF2             <---------ARR14(2)   <-----------HVH21         <---------GLK1(2)  <---------ANAC46         <---------TOE2(2) ------->ANAC46--------->WRKY38(1)  ------>ZmHOX2a(1) --------DEAR3(1)          <---------TOE1(2)                          <----------DOF2 -----------SPL14     <-----------HVH21                         <------ZmHOX2a(2) -ARR14(2)     --------->WRKY12  <-----------GT1               --------->ARR14(2) ------>SPL7   ----------->HVH21<-----------GT1                --------->AGP1                 <------ ---------AtSPL3<---------WRKY18(1) ===================================HOX2a_HOX2a        <---------CCA1(2) >ARR14(2)   --------------------->WRI1                        <---------ARR14(2)  <---------GLK1(2)   tacggcgtcaacgggcattgaccttgtcgcagattttcctctctagtctccgtcttctattaccagatcgagctttgttcttcgagcttctcatctcttt  5549100                                                                    --------->REM1(2)                                                                  --------->LBD16                                    <---------YAB1               <---------ANAC46                                <---------ANAC58                 <---------ANAC55(1)          ----------->GT1       <---------ANAC58                 --------->ANAC55(2)              ---       ---------->DOF2        <---------AHL20(2)                 <---------ANAC58   <---------LBD16    --------->TOE2(3)  <----------DOF2               <---------MYB46(3)   ------>ZmHOX2a(2)      ==== ----DOF2<---------TOE2(3)    <-----------GT1   <----------DOF2  <---------ANAC58 <---------AGP1 <---   gttcaatctcaaaggtagaaattcgcgttaatttacttgtgatttcgctgttttttggttactgtttccgtgttgatcgatctagttctgggtttttcga  5549200  Previous    Next  AGI:  At5g16870.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G03010.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G03010.2); similar to hypothetical protein [Vitis vinifera] (GB:CAN83813.1); contains InterPro domain Peptidyl-tRNA hydrolase, PTH2 (InterPro:IPR002833) Range:  from: 5546814    to: 5548739    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g16880.1    Description:  VHS domain-containing protein / GAT domain-containing protein. similar to VHS domain-containing protein / GAT domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G06210.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39460.1); contains InterPro domain GAT; (InterPro:IPR004152); contains InterPro domain ENTH/VHS (InterPro:IPR008942); contains InterPro domain VHS; (InterPro:IPR002014); contains InterPro domain Target of Myb protein 1 (InterPro:IPR014645) Range:  from: 5548917    to: 5551466    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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