Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                 ================HOX2a_HOX2a               <------NtERF2                   <------ZmHOX2a(1)               <---------At4g35610      <---------ANAC46         <---------ANAC58               --------->At4g35610     <---------LBD16  ------>ZmHOX2a(2)            <------NtERF2            --------->GLK1(2) <------ZmHOX2a(2)           ------>NtERF2            --------->KAN4(2)  ================================HOX2a_HOX2a           --------->LBD16         <---------GLK1(1)  --------->AGP1----------->GT1          --------->ANAC46         <---------KAN4(1)  <---------ARR11(3)         <---------LBD16           <----------TaMYB80 --------->ARR14(2)       -------->ZAP1              --------->ARR14(2)  <---------ARR14(2)     <---------WRKY18(1)          <---------ARR14(2)  --------->ARR11(3)        ------>ZmHOX2a(1)    ----------->HVH21             <---------ARR11(3)  <---------AGP1<---------ANAC46    --------->WRKY12         <---------ZAT2    ===============HOX2a_HOX2a     ----------->RAV1(2)    --------->WRKY38(1)      --------->ZAT2  --------->MYB59     <---------ANAC46  --------->TOE1(3)         ------>NtERF2  <--------P<---------CCA1(2)  --------->AHL20(2)     <-----  --------->TOE2(3)         --------->LBD16<---------MYB52(1)    <---------ANAC58            -------- >MYB46(3)--------->LBD16 <---------LBD16--------->LBD16===============================HOX2a_HOX2a  -   acaaccttgaccccggcatcggcattgctccggctggatattccggttaggaatcagatctactattgcgtcgtttaaattcctggctctgtttccgaat  5543400                     --------->ANAC46                  <-------TEIL                <---------MYB52(1)               --------->LBD16              --------->ANAC46          <---------HSFB2a(1)                      ------>MYB46(1)    --------->ARR14(2)          <---------GLK1(1)                        ------>MYB83       <---------ARR14(2)         <-----------ARR10                    <-----------GT1     --------->HSFB2a(2)         --------->GLK1(2)              <------NtERF2       <----------DOF2 ----KAN4(2) <---------LBD16          --------->ANAC46   ------>ZmHOX2a(1)                      ----- ->LBD16<---------GLK1(2)            <---------LBD16    <---------ALFIN1                  --------->ZAT18 -------->TOE2(3) --------->ZAT14   --------->ANAC46  ------>ZmHOX2a(1)                   <---------ZAT14   aacctccatagaatctccggtacacgatgtctaggtttacgcggcattacaccttcctcctcctttctctcgaatttggagagagagaagagtgaacgag  5543500                                <------NtERF2                               --------->LBD16                              <---------ANAC58                              <---------ANAC58                              --------->ALFIN1           --------->ANAC46                              <---------ANAC46          <---------HSFB2a(2)                             <---------LBD16            --------->HSFB2a(2)                       ---------->DOF2        *TSS      --------->HSFC1(1)                     ----------->HVH21     --------->ARR11(3)   <---------ATHB51<---------ANAC46        <---------ARR11(3)        --------->TOE1(2)            --- ---->ZAT2      <---------AtMYB61      ---------->DOF2  <---------HSFC1(1)                 ----------   cttcgataatggagtctgatggtgtgaaagaggcgggagattaaaggtcttctgggttctcgaaactataaactgcgattttgaaaatttcaaaacaatt  5543600                                            --------->ANAC58                                       --------->LBD16                                      --------->RAP2.6(2)                                      --------->ANAC58              --------->ANAC58        --------->ANAC58              --------->ANAC58        ------->GAMYB      --------->At4g35610          --------->MYB52(1)      <---------At4g35610        <---------ATHB12 <---------ZAT2                 --------->ANAC46                            --------->ARR14(2) <---------At4g35610            --------->ANAC58--------->ZAT2       --------->MYB52(1) --------->ZAT2              --------->ZAT18--------->ANAC58         ------>MYB46(1)      --------->AHL20(2) --------->At4g35610  ---------->DOF2--------->MYB46(3)              ------>MYB83         <---------AHL20(2) ------->DOF2 --------->ANAC46  --------->ANAC58<---------ZAT2     <---------MYB59  --------->AHL20(2) -->CBF   <---------MYB52(2) <---------ZAT18--------->ANAC46   ---------->DOF2    <----------DOF2   caaagctgagctacaaacgctatccaaagcgtccactcaaccgcaaacgcaggtcgcttagcacataaaccgaaccgaaattcgctttaaattttaatcg  5543700                                                                            ------->GAMYB                                                                         --------->MYB52(1)                                                                  --------->LBD16                                                                 <---------LBD16  --------->ATHB12             <<<<<<<<<TBF1   --------->LBD16                    <---------LBD16<------------CBF     <-----------GT1       <---------LBD16                >>>>>>>>>RAP2.2<-----------GT1   --------->YAB1     <-----------GT1                ------------>CBF --------->CCA1(2)            --  <---------YAB1  <----------DOF2       <----------DOF2   --------->TOE2(3) <---------MYB59----------   gtctattatactttcttcttcttttcacatccggtttcattactttcttcaaatttccaatctaaaaccgggatataaccgaattgatttgtttagttta  5543800                                                                       <-----------ARR10                                                                       --------->ARR11(3)                                                                  ------>NtERF2                                                                  <------NtERF2                                                                  --------->LBD16                                                                 --------->RRTF1(2)                                                                 ----------->RAV1(1)                                             <---------DAG2      --------->RRTF1(3)                                           ------>NtERF2         --------->DEAR3(1)                                           <---------ATERF1(1)   --------->RAP2.3(3)                                          <---------ALFIN1       --------->RAP2.6(2)                                          --------->RRTF1(2)     --------->RAP2.3(2)                                          --------->RRTF1(3)    --------->ATERF1(1)                                          --------->RAP2.6(2)   <------NtERF2                                          --------->DREB2C(2)   --------->ERF1                                          --------->DEAR3(1)    --------->RRTF1(1)                                          --------->RAP2.3(3)   --------->RAP2.3(1)                                          --------->RAP2.3(2)  --------->ABI4(1)                                         --------->ATERF1(1)   ------>NtERF2                                         --------->RAP2.6(1)   <---------ATERF1(1)                                         --------->DEAR4(2)   --------->RAP2.3(3)                                         --------->ERF1       --------->ANAC46                                         --------->ORA47(2)   --------->RAP2.3(2)                                         --------->RAP2.3(1)  --------->DEAR3(1)                                         --------->RRTF1(1)   <---------DEAR3(1)             --------->LBD16            --------->LBD16      --------->DEAR4(2)             ------>NtERF2              --------->At4g35610  --------->RRTF1(1)            --------->ANAC58            ------>NtERF2        --------->ATERF1(1)            --------->ANAC46           --------->DEAR3(1)    --------->ERF1            --------->RAP2.6(2)       ------>ZmHOX2a(2)      --------->RAP2.3(1)            --------->ANAC58          --------->MYB46(3)     --------->ORA47(2)            ------->GAMYB           <---------ARR14(2)      ------->GAMYB           <---------MYB55(2)       --------->ARR14(2)      <---------ATERF1(1)           --------->MYB46(3)     <---------YAB1           --------->ANAC46     <---------GLK1(1)    --------->ZAT6<---------ATERF1(1)--------->DEAR3(1)     --------->GLK1(1)   <---------At5g28300<------NtERF2<---------ALFIN1              ---------->DOF2 ------->ANAC46<---------ALFIN1   ----------->ARR10   --------->ANAC46 <---------ARR11(3) ->GT1  <-----------GT1 <-----------GT1--------->ANAC46 <---------ALFIN1            --------->TOE2(3)   aacgcagaaatcacccgccactctagttacagtagtatgatccgccgccttctcatccccaacgccgccgcaaaatctcaccagtacattaaagtctctc  5543900                 <------NtERF2                --------->LBD16               --------->DEAR3(1)               <---------ANAC46              <------NtERF2              <---------LBD16              --------->RAP2.3(1)              --------->ATERF1(1)             <---------RAP2.6(1)             <---------RRTF1(1)             <---------ERF1             ------>NtERF2             <---------RAP2.3(1)             <---------ATERF1(1)            <---------RAP2.3(2)            --------->DEAR3(1)            <---------DEAR3(1)           --------->RAP2.3(1)           --------->ATERF1(1)                                                               <-------          <---------RAP2.3(1)                                                   <---------GLK1(2)   -          <---------ATERF1(1)   <---------MYB52(1)                              --------->ARR14(2)<--         <---------DEAR3(1)   <---------ANAC46                                --------->ANAC46    ---   --------->ETT(2)         ------>NtERF2                                 <-----------GT1  <---------  --------->HSFB2a(2)       --------->ABI4(1)                  --------->WRKY18(1)     ------>ZmHOX2a(1)  <---------HSFB2a(2)      --------->DEAR3(1)                --------->At4g35610<---------ARR14(2)---   tcttctcgacatcggcgccggagataacaccgccgtttattcacaaatgcaaaaccatctctcaggtcaagcttattcaccagaaactcctctctttcgg  5544000                                                      <---------ANAC46                                                      <---------ANAC58          --------->LBD16                                                      <---------ANAC58<---------CCA1(2)                                                   <--------P        <---------ARR14(2)                                                   <---------MYB52(1)<---------ARR11(1)                                                  <-------GAMYB      <-----------ARR10           ------->TEIL                          --------->MYB52(2)  ------->TEIL<---------MYB52(1)          <---------GLK1(2)                      <---------DEAR3(2)  --------->ARR14(2)      --------->TOE1(3)                          --------->MYB55(2) <---------CCA1(2)  ------>ZmHOX2a(1)                              <---------MYB46(3) <---------ARR14(1) --LBD16  <---------CCA1(2)                     <---------DEAR3(1)<---------ANAC58              ----- -------->YAB1                                 <---------MYB52(1) <---------ANAC55(2)           ----- -------ARR14(2)                        --------->ARR11(3)        --------->ANAC55(2)         <------ ------>ARR14(2)        --------->ANAC46<---------ARR11(3)        <---------ANAC46            ------- -DOF2--------->TOE2(3) --------->bZIP60(2)   <-----------HVH21   <---------ANAC58        ------>ZmHOX2a(1) ------>GLK1(1)       <---------ALFIN1 <---------CCA1(2)<---------CCA1(2)    ------>ZmHOX2a(1)-------   aatcctaaccttgaatctcacttcccacctcatttccacctatatctccgtcggttgcttatctcatgccgtatctctcctccgtcgttttcctccatct  5544100                                                    --------->ATERF1(1)                                                    <------NtERF2                                                    --------->At4g35610                                                   <---------RAP2.3(1)                                                   <---------ATERF1(1)                                                   <---------ERF1                                                   <---------RRTF1(1)                                                  <---------RAP2.3(3)                                           <------NtERF2                                   <---------ARR14(2)                                  --------->At4g35610                                  <---------At4g35610 ------>NtERF2     <---------ANAC46             <---------ZAT2  <---------DEAR3(1) ------>HVH21                     --------->ZAT2  <---------RAP2.3(2) ------>TGA1--------->ATHB12     <---------TOE1(2)<---------RRTF1(3) ---At4g35610            <---------ATHB12 ----------->RAV1(1)                    <---------DAG2 -->At4g35610         <-----------GT1     ------>NtERF2    <---------ATHB12    ---------->ID1 ---->RAV1(2)      <---------GLK1(1)  <---------DEAR3(1)   --------->AHL20(2)  ------>NtERF2   <-----   gacgctggtgtctaccattggaattcactcattcgcagctacggcgacaatggctgcgccaataaatgtctctatttgttcggccttatgcattctctgt  5544200                                                    --------->ARR11(3)                                                    <---------ARR11(3)                                                    <---------ARR14(2)                                                    --------->ARR14(2)                                                   --------->GLK1(1)                                                   <---------GLK1(1)                                                  --------->ARR11(3)     <---------ARR14(2)           <---------ICU4                    <------NtERF2               --------->ARR14(2)       --------->LBD16                       ------>NtERF2               <-----------ARR10      <---------ANAC46                      <---------RAP2.3(1)    <---------ANAC46    <----------DOF2     <---------LBD16                       <---------RAP2.3(2) <-------GAMYB <---------At4g35610     <------NtERF2                         <---------DEAR3(1) --------->MYB52(2)       <---------DAG2    ------>NtERF2                          <---------ANAC46   <---------MYB46(3)  --------->ANAC58    <---------ATERF1(1)                   <---------LBD16    --------->SPL7  --------->At4g35610   <---------DEAR3(1)                  <---------ANAC58     <---------MYB52(1)    --------->ANAC58   --------->ANAC46                    <---------ANAC58 ------>ZmHOX2a(1)--------->GLK1(2) ------HVH21  <-----------GT1    <---------REM1(2)<---------ARR11(3)    <---------GLK1(2)       <----   catggacgccggataattacacattccccttcgtcttcaaggcttgcggcgagatatcctccgttcgttgtggagaatctgctcacgcgctttctctggt  5544300  Previous    Next  AGI:  At5g16850.1    Description:  ATTERT (TELOMERASE REVERSE TRANSCRIPTASE); telomeric template RNA reverse transcriptase. similar to unnamed protein product [Vitis vinifera] (GB:CAO40853.1); contains InterPro domain RNA-directed DNA polymerase (reverse transcriptase); (InterPro:IPR000477); contains InterPro domain Telomere reverse transcriptase; (InterPro:IPR003545) Range:  from: 5538183    to: 5543546    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g16860.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G18750.1); similar to hypothetical protein OsJ_017220 [Oryza sativa (japonica cultivar-group)] (GB:EAZ33737.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39569.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN79811.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 5543837    to: 5546389    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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