Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            <---------ANAC58                          <---------ANAC58                   ------>MYB46(1)                --------->ZAT2         <---------WRKY18(1)        --------->WRKY12  <---------ANAC55(1)        --------->WRKY38(1)--------->LBD16                                                 ----------     <---------MYB46(3)   <---------ANAC46                                                 <---------MYB46(3)   <-------GAMYB<---------ZAT2                                                   <------ZmHOX2a(1)  <---------ANAC46 ------>MYB83                                         <------MYB83       <------MYB83 ------ANAC58   --------->At4g35610                                     <------MYB46(1)    <------MYB46(1) ------ANAC58   <---------At4g35610                                --------->ATHB12    --------->ATHB12 ------ANAC46   ----------->RAV1(2)                       --------->LBD16     <---------AtLEC2      - >ZmHOX2a(1)  <---------ALFIN1                       <---------ZAT14<---------ANAC46   <------ZmHOX2a(1) -->TOE2(2) --------->AtMYB61--------->REM1(2)   <---------HSFB2a(2)<---------ANAC58 <---------TOE2(3) -->TOE1(2)--------->bZIP60(1)                   --------->HSFB2a(2)<---------ANAC58 <---------TOE1(3)   cgtgtcgttgttgacctcacctgcccttccgtgtaaaattgaaactcggttcgagtaaaccggaccaattgagtgggtttgcaggataaggattggttaa  5535500                                ---------->DOF2                                   <-----------GT1                             <----------ID1                                      --------->ICU4    <- ->GT1                    ---------->DOF2   --------->ALFIN1           <----------DOF2       -------- -------->ARR11(3)  <---------ZAT14        --------->ALFIN1            <---------DAG2       <--------   atgattttgggctacattggagtttagtaaaaggaaaagagaagagttgggccaaaaacaaggagaagtccaacttttttgtaattaccaagttatcata  5535600                        --------->YAB1               --------->YAB1               --------->ATHB51               -------->HAHB4               <--------HAHB4               <---------ICU4               <--------ATHB1              <---------YAB1              =================================================MADS_MADS              --------->AHL20(2)              --------->ICU4                         <---------HSFB2a(2)              <---------------AGL15                  --------->HSFB2a(2)              <---------ATHB51                 <---------DAG2                        --------->DAG2            --------->YAB1                     <----------DOF2         <---------AHL20(2)           --------->AHL20(2)                  <---------------AGL15--------->AHL20(1)  <---------YAB1   <---------At5g28300  ---------->DOF2             <---------AHL20(1) --------AHL20(2) <-----------GT1    <---------ANAC55(2)            --------->ARR11(3)         <----- ->YAB1    <---------AHL20(2)       <-------TEIL  <---------YAB1 --------->YAB1     ---------->DOF2-- -YAB1    --------->AHL20(2)  <----------DOF2  --------------->AGL15<---------ARR11(3)----------->GT1   ttttatgactgaattaataattacagtaatcactttgatacataaaccactttttatagaaaaacaatgatatatttttgttgataaaaagtaaaatttt  5535700                                         --------->ANAC55(2)                                         <---------ANAC55(2)                                         --------->ANAC58                                         --------->ANAC58                                         --------->ANAC46                               --------->ATHB51                               --------->YAB1                               <--------ATHB1                               -------->HAHB4                               <---------ICU4                              <---------AHL20(2)                              <---------ATHB51                                                      -                              --------->ICU4 --------->HSFB2a(1)                         --------->ARR11(3)     <---------AHL20(2)       <---------YAB1 --------->HSFC1(2)                    ----------->GT1 --  ------->TEIL --------->AHL20(2)      <-----------GT1<----------DOF2     <----------ID1 <---------ARR11(3) ----AHL20(2)  <---------AHL20(2)   <---------ZAT6------>ZmHOX2a(1)       ----------->GT1--------->AHL20(1) ------->ANAC55(2)       --------->TOE2(3)   <---------HSFC1(2)          ----------->GT1--------->AHL20(2)   tatgtatttttttctaataaaacataaacttaataattgtgttacgaaactcctaacttttgttttgaactgaagagggaaaaaatagaaatatatacta  5535800                                                                                   <---------ANAC46            <---------AHL20(2)                                                     <---------ANAC58            --------->AHL20(2)                                                     --------->At4g35610          --------->TOE2(3)                                                        <---------bZIP60(2)        --------->ARR11(3)                                 --------->ANAC58        <---------ANAC58        <---------ARR11(3)                                 --------->ANAC58   <---------ZAT6        --------->AHL20(1)                               --------->MYB52(1) <---------ANAC46        <---------AHL20(1)                               --------->SPL7 <-------MYC3        --------->ICU4                                  ----------->HVH21   <---------ANAC58  -------   ----------->GT1                                    <---------ANAC58  ------->MYC3   -------------- ----------->GT1                                      <---------ANAC58  *TSS<---------ANAC58 -------- -------->DAG2          ------------>CBF        ---------->DOF2      <---------ALFIN1 <-----------HVH21 -------->DOF2<------------CBF              <------ZmHOX2a(1)      <---------ALFIN1<---------At4g35610   aaaaagtgaaaatattaattgttggaaacaattagggactaaaataggattaaagggcgtaacgcaaacccacacgttgagtgtgaggtgtcatataaag  5535900                                                                                             --------                                                                                            <--------                                                                                          --------->ANAC58                                                                                          --------->ANAC46                                                                                          --------->ANAC58                                                                                   ----------->HVH21                                                                                 <---------ANAC58                                         --------->HSFB2a(2)                <---------ARR14(2)                                         <---------HSFB2a(2)                --------->ARR14(2)                                        ------>ZmHOX2a(2)      --------->ANAC46  <---------ANAC46 -->DAG2                    --------->ANAC46                   --------->ANAC58  <---------ANAC58   - --->AGL3                   --------->ANAC58    <-------TEIL   --------->ANAC58  <---------AtLEC2   < -->DOF2                    --------->ANAC58<---------------AtSPL3          ------->TEIL---------->DOF2   caaaatacactcttccctctctatctatctacgcatcatcgatctcgaagtacgtttcggttttcaggccaatctctgaatctgcgtgacaaaagcaaca  5536000     --------->ARR11(3)     <---------ARR11(3)    <---------CCA1(2)                          <------NtERF2                                       <-  <---------ANAC55(2)                          <---------SPL7                                      <-  --------->ANAC55(2)          --------->ARR11(3)                                                  -- --->RAV1(1)                   <---------ARR11(3)                   <---------ANAC46         -------- --ID1             --------->LBD16          --------->RAP2.6(3)   <---------ANAC46      --------->LBD16 -------->AHL20(2)--------->ANAC46     <-------TEIL       <---------DAG2<---------AHL20(2) ---------- -----------GT1  <---------LBD16<------ZmHOX2a(2)         <----------DOF2             <---------LBD16   aattacatatctctctctctgcgcgacttcgaagatcaacatccatggcggtatgctctactttttttttgtgtataattttgttttatgcggaaaaggt  5536100                      <-----------RAV1(1)                  <---------ARR14(2)          --------->ZAT2          <---------At4g35610          --------->At4g35610          <---------ZAT2       ------>ZmHOX2a(1)          <---------MYB52(1)     ----------------->AGL1   ====================================HOX2a_HOX2a     <-----------------AGL1   <------ZmHOX2a(2)          <---------TOE1(2) --------TOE2(3)  <---------ARR11(3)         --------->LBD16 <---------WOX13(1) --------TOE1(3)  --------->ARR11(3)        <---------HSFB2a(2) ------->MYB59 <--------P  <---------ANAC58 --------->HSFB2a(2) ->DAG2<---------At4g35610 <---------ANAC58<---------LBD16 <------ZmHOX2a(1)               <<<<<<<<<TBF1 >DOF2 ==============================HOX2a_HOX2a        <---------LBD16        --------->ATHB12   ttaggtttcctctgctggtagatattgttgcgatccatttgtttatcgggaaattttctcaggattgatatttttggctattgatttgatttcttcttca  5536200                                 ------>NtERF2                                 <---------DDF1                                 <---------RAP2.6(3)                            <-------PIF5                                                   <---------WOX13(1)                        <---------ZAT14                                          ---------->ID1                        --------->ZAT14                                       <---------YAB1                     --------->At4g35610                                    --------->ATHB51  <------                   <---------WOX13(1)                                      <---------YAB1<---------AHL20(2)                 --------->ATHB12----------->RAV1(1)                     <---------ICU4  --------->ATHB12           <---------MYB52(1)   <---------ETT(1)                        --------->ICU4  <---------AHL20(2)         <-----------RAV1(1)------->PIF5 <---------ARR11(3)             <---------YAB1  --------->AHL20(2)        ------>ZmHOX2a(2)<---------ALFIN1--------->ARR11(3)           <---------ICU4   <---------YAB1      <---------ARR11(3)--------->ZAT18 --------->RVE1(1)            --------->ICU4 <---------MYB52(1)      --------->ARR11(3)<---------ZAT18 --------->CCA1(1)            <---------YAB1 --------->ICU4  <   atttggatgatctgttgtttgattgctgcacttgccgacataatatctccaatgctatttggacgagtttgatgattattattgtcgttattaattgatt  5536300                              <-----------GT1                             <---------ICU4                                                         <                             --------->YAB1                                                         -                            --------->ICU4                                                         <-                     <---------ANAC58                                                              ==                     <---------ANAC58                                     --------->YAB1           -- ------->TEIL ------>ZmHOX2a(2)                                <<<<<<<<<MYB2                       <- ---GLK1(2)  --------->At4g35610--------->ZAT6   <---------GLK1(1) <---------ANAC46                <- ---------CCA1(2) --------->ARR14(2)   <-----------GT1      <---------AtMYB61               <--------   ctgtatctctgtgtgatctgtattcgtgcaattatctctattatctccttgatttctcggttttggttttcgtttatcgtagtaaatcgcgattgtgtta  5536400  Previous    Next  AGI:  At5g16840.1    Description:  RNA recognition motif (RRM)-containing protein. similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT4G17720.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62170.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Aldo/keto reductase; (InterPro:IPR001395); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 5535872    to: 5538253    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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