Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          --------->YAB1                     --------->WOX13(1)                    --------->AHL20(2)           --------->MYB52(1)          --------->TOE1(2)         <---------MYB52(2)  --------->YAB1    <---------AHL20(2)          --------->ARR11(3)  <---------ICU4   --------->AHL20(2)           --------->GLK1(2) ------->YAB1--------->ANAC58              ------->GAMYB >ZmHOX2a(1) --------->ANAC58            -------->P ->YAB1  --------->MYB46(3)     <----------DOF2 <---------ARR11(3)                               ----   ttcatcatcaaacaaacgaaaataaatcaaaattcttttaatcaacccaaaatctttcaacgtagtagatgagttgagaccaagtttaagacttttgact  5424200                                                                                                  <--                                                                                                  <--                                                                                                 ----                                                                                                 <---                                                                                             --------                                                                                           --------->ANAC58                                                                                           --------->ANAC58                                                                                       --------->TOE2(3)                  <---------ARR11(3)                                                   --------->TOE1(3)                  --------->ARR11(3)                               --------->YAB1   <---------GLK1(1)       >>>>>>>>>RAP2.2                                            <-------TEIL    <------ZmHOX2a(1)       --------->TOE2(3)                                      <---------YAB1    <---------TOE2(3)<--- ----->YAB1       --------->GLK1(2)    --------->At4g35610 <----------DOF2      <---------TOE1(3)----   cataaacaatctaaacccaaaatctttcaacgtagtatatgagatgagaccaagtttaagacttttgattcataaacaatctaaggaaacctcaagaaag  5424300                                                                        --------->TOE1(3)  <---------AHL20(2)                                                    --------->TOE2(3)  --------->AHL20(2)                                                   ----------->GT1 -------CCA1(1)                                                        --------->ANAC46 -------RVE1(1)                                                       <-------TEIL ----->ARR11(3)                                                     --------->ARR14(2) ------AHL20(1)  --------->ANAC46              <---------YAB1       <---------ARR14(2)      <xxxxxxxx -->DOF2--------->ANAC46              <-----------GT1             ---------->TaMYB80      --------->ANAC58 ------ARR11(3)  --------->ANAC58 <---------DAG2             ---------->DOF2              --------->ANAC58 ----->AHL20(1)  --------->ANAC58 <----------DOF2   --------->YAB1<---------KAN4(2)       --------->ANAC46   atatttttttaagacacaaacgcaaactcaagttaactttttatctcttataaatgaaaataacaaagaatatacgttaaaacttatattagacgcaaac  5424400                                                                        <-----------HVH21                                                                   <---------ARR11(3)                                                                   --------->ARR11(3)                                <---------ATHB12                   <---------ARR14(2)                              --------->WOX13(1)                 ----------->ARR10                            <------ZmHOX2a(2)                 <---------DEAR3(1)                           <---------ARR11(3)           ------->TEIL ------>ZmHOX2a(2)     <------ZmHOX2a(2)                 ----------->HVH21        <-----------GT1    <------NtERF2  --------->At4g35610  <--- xxxxxxxxsmallRNA(i)       --------->ARR11(3)  ------->TEIL<---------DEAR3(1)   <---------ARR14(2) --   tcaacttcaaacgctgagaatgacagagagatcaatgaagaaatttacgaaccatatgtactcggcgatgatctggtcagtggaatcggagagatcgaga  5424500                                                                                               <-----                                                                                               <-----                                                                                             --------                                     ---------->DOF2    <---------------AGL15                <-------                               <---------GLK1(2)        --------------->AGL15                <-------                              <------ZmHOX2a(1)         =============================================     --------->ARR14(2)     <---------TOE1(2)       <----------DOF2                        <---------   <---------AHL20(2)  <-----------ARR10           --------->TOE2(3)    ---------->DOF2 <---------MYB52(1)  --------->AHL20(2)   --------->ARR11(3)       <-----------GT1      *TSS      --------->GLK1(2) ------WOX13(1)        <---------ARR11(3)   --------->YAB1          --------->ZAT6 ------>ZmHOX2a(1) ------->ATHB12       <---------CCA1(2)  --------->YAB1<-----------------AGL1 <---------GLK1(2)======   ttgattaaatctgcaagtgaagacatatcttaggaatctcaaagaataataaacctttttttttttggtaacactaaagagattcctgcaggtatttata  5424600                              <----------DOF2                          --------->ZAT18                       <---------ANAC58                       <---------ANAC46                       <---------ANAC58                   <------MYB83 <---------WRKY18(1)                   <------MYB46(1)                  <---------AtMYB61                                                             -----                  --------->MYB111(2)                                                           -----                  --------->MYB46(2)                                                            -----                  --------->MYB55(2)                                                           <-----                  <---------MYB46(3)                                                           ------                  --------->MYB111(1)                                                        <-------                 <--------P  <---------ANAC58                                                -------- ------TBP     ------------>AtMYB84                                                         --------- ----------AGL15 <---------MYB55(1)<----------DOF2                  --------->MYB52(1)      <-------- ->AHL20(2)  <------NtERF2<---------ZAT18                        --------->ANAC58           --------- --AHL20(2)  <---------ANAC46<---------AtLEC2         <---------AHL20(2)                    <-------- ----TBP   --------->ALFIN1  <---------ANAC58        --------->AHL20(2)               --------->MYB52(1) ==========MADS_MADS   --------->ALFIN1              <---------AHL20(2)    <XXXXXXXXXXXXXXXXXXXXMIR4239 --TBP   <---------O2--------->ALFIN1        <----------DOF2     --------->ANAC58    --------->RVE1(1) ====================================================================================================   tatagggagagaggtgggggtaggtgtgtgtgcttgactttgctatgctttgaaattttttttggtaacgaaacggagaatgcgaaaatatcgggctatt  5424700   <---------GLK1(1) --->ATHB1 ---->ATHB12 ---->ATHB51 ----YAB1 --->ICU4 --------AGL15 ------->AGL15        --------->GLK1(2)                      <---------AHL20(2) --->ATHB5  --------->YAB1  --------->TOE2(3)   <---------At4g35610                   <----------DOF2 ---------AGL3       <---------GLK1(2)          --------->At4g35610                <---------ARR11(3) -------->AGL2 <-----------RAV1(2)    --------->GLK1(2)     <---------AHL20(2)     --------->GLK1(2) ---------AGL2 <---------LBD16       <---------GLK1(2)  <----------DOF2    --------->At4g35610 ========MADS_MADS<------ZmHOX2a(1)----------->ARR10 ------->TEIL<-----------GT1  <---------GLK1(2)<-   attggaaatgcgaattatcaggagattctagcttaataagattctatattagctgaatcttttttattttcaacatcatctacagaatctttttttttgt  5424800                                                                                                    <                                                                                                    -                              <---------YAB1                                                        -                         <XXXXXXXXXXXXXXXXXXXXMIR418              ----------->GT1       <---------At4g35610                   <----------ID1                           <---------YAB1            <---------WRKY18(1)                 ---------->DOF2                            --------->ICU4---------->DOF2 -----------              --------->AHL20(2)                  <---------AHL20(2)   <---------YAB1--------->WRKY38(1)             --------->AHL20(2)--------->YAB1     --------->AHL20(2)<---------YAB1   --------->WRKY12 ----------GT1<---------AHL20(2)           <-----------GT1--------->YAB1 <---------AHL20(2)         <   tttcccgttttaaaatttaaaaagacaagtttattatcacattagtttccatataaatagtcatgattttgttattaaaagaaaatgttgacctgatatg  5424900                         ------>MYB83                         ------>MYB46(1)                        --------->MYB55(1)                       --------->AtMYB61                       <---------MYB59                       <---------MYB111(1)                      <---------AtLEC2                       <---------MYB52(2)                       <---------ANAC58      <---------------AGL15                                     <---------ANAC46      --------------->AGL15                                     <---------ANAC58                  <--     ----------------->AGL3                                   <---------YAB1                   <-----     ==================================================================MADS_MADS      ------->GAMYB     ----------------->AGL2 --------->TOE2(3)            ------>MYB46(1)              ----------->GT1 ---------------AtSPL8 <---------MYB46(2)                ------>MYB83                --------->ANAC58 -------------->AtSPL8 <---------MYB111(2)             --------------->AGL15         --------->ANAC58 -------->HSFB2a(2)   --------->ANAC55(2)              <---------MYB59   <---------ANAC55(2)  <------ >HVH21    ---------->DOF2 --------->ZAT6           <-----------GT1      ----------->GT1    --------- ---------HSFB2a(2)   --------->ANAC46<----------DOF2 ----------------->AG         --------->MYB52(1)   ttcgagtaccatataaagtttctcacctaaccctagttctctttcaatacagaattaccaaattttgcttggaatatgtaaattccaacggaaataataa  5425000                                                                           ------->GAMYB                                                                           --------->TOE1(2)                                                                          --------->MYB46(3)                                                                          <---------MYB52(2)                                                                        --------->MYB52(1)                                                                        <---------DOF5.7(2)                   --------->TOE1(2)             --------->AHL20(2)  --------->At4g35610                  <---------MYB52(2) --------->GLK1(2)               <---------At4g35610    --------->HSFB2a(2)              <---------ARR11(1)             --------->ANAC58         <-------    <---------HSFB2a(2)              ------->TEIL<---------AHL20(2) --------->ANAC58         <------- -------------AtSPL8--------->MYB52(1)--------->HSFB2a(1)         ---------->DOF2            ------->TEIL ----AHL20(2) <------ZmHOX2a(1)      <-----------ARR10           <------ZmHOX2a(1)           -------- ---YAB1  --------->TOE1(2)          --------->ARR14(2)  <---------------AGL15               -------- >YAB1    --------->TOE2(2)          <---------ARR14(2) <-----------------AG--------->MYB52(1)  <----   atggtactcgaacataggaaacgaacgagacaatcgacgaatctttcccatttatatatcaaaaataggaaagctaacgaacgagacaatcgacgaatct  5425100  Previous    Next  AGI:  At5g16570.1    Description:  GLN1;4 (Glutamine synthetase 1;4); glutamate-ammonia ligase. Identical to Glutamine synthetase cytosolic isozyme 1-4 (GLN1-4) [Arabidopsis Thaliana] (GB:Q9FMD9); similar to ATGSR1 (Arabidopsis thaliana glutamine synthase clone R1), glutamate-ammonia ligase [Arabidopsis thaliana] (TAIR:AT5G37600.1); similar to ATGSR2 (Arabidopsis thaliana glutamine synthase clone R2), glutamate-ammonia ligase [Arabidopsis thaliana] (TAIR:AT1G66200.1); similar to cytosolic glutamine synthetase [Brassica napus] (GB:CAA73063.1); similar to Glutamine synthetase cytosolic isozyme (Glutamate--ammonia ligase) (GB:P04078); similar to glutamine synthetase [Hevea brasi Range:  from: 5421746    to: 5424569    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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