Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    ---                                                                                                  <--                                                                                     <---------LBD16         <---------ANAC46                                                  <---------ANAC58       <--    <---------REM1(1)                                                ----------->HVH21            ---   <---------TOE2(3)                                               <---------ANAC55(2)           ---- ---ANAC58                                              ----------->GT1    <---------ANAC58<--------- ---ANAC58      --------->ICU4              <---------ANAC58       --------->ANAC55(2) --------->LBD16 -DOF2 ------->TEIL        <-----------GT1  <---------ANAC58 --------->AHL20(2)    --------->MYB52(1)   gttttgatgtaacttgtaatgtttaagtttcactgtttttgtagagacttgtcttcaatggaaaaaaataggtgatggcttaacttaaccgggctttgaa  5392400  <---------AHL20(2) ------>AHL20(2) -------AHL20(2)                                                                         <----------DOF2 -------AHL20(1)                                                                 <-----------GT1 ------>AHL20(1)  <---------AHL20(2)                  <------MYB46(1)         --------->YAB1       -- ----->AHL20(2)  --------->AHL20(2)                   <------MYB83            <---------ICU4      <-- -DOF2       <---------YAB1          >>>>>>>>>MYB2   --------->MYB59     <---------TOE1(2)    <------   taaatttatctggttcttataaaattgtcatattgcgaaaaccaagacttatagttcggtttgatgatgcattcgtagaattataacttcactttcggtt  5392500                                                        <---------DEAR3(2)                                                        <---------MYB46(3)                                                <---------MYB52(1)                                         <---------At4g35610                                         --------->At4g35610                                        ----------->ARR10     --------->ATHB12                                        --------->MYB52(2)   <---------YAB1                                      <---------MYB52(1)<------MYB46(1)     <---------LBD16                <---------MYB46(3)  <------MYB83                        <-------TEIL     --------->TOE1(2)             ------>ZmHOX2a(2)   <---------AtMYB61                   --------->CCA1(2) ------->YAB1                     <------ZmHOX2a(2)    --------->MYB111(1)                --------->ARR14(2) -------YAB1                     --------->ARR14(2)   <--------P<---------WOX13(1)        <---------ARR14(2) -GAMYB                          <---------ARR14(2)  <-------GAMYB--------->ATHB12<----------DOF2   atcaaaacctggaaatttgcaaacttatcagaccggatcggttagcttcggtttgggttggttctgattgattagaatcgaagtcttttttggatacact  5392600                                  ----------->RAV1(1)                                <---------At4g35610                                --------->At4g35610                                --------->ZAT2                                <---------ZAT2                            --------->ANAC58                            --------->ANAC58                           --------->SPL7              ----------->GT1  ----------->RAV1(1)          ---------->DOF2<---------SPL7        <------ZmHOX2a(2)----------->HVH21     --------->ANAC58   --------->LBD16     --------->ANAC58  --------->ANAC55(2)    <---------TOE1(2)  <---------ANAC46     --------->ANAC58  --------->TOE1(2)    <---------ANAC58     --------->ANAC58                   --------->MYB52(1) --------->ANAC58      <---------ANAC55(2)  --------->ANAC46              ---------->DOF2 --------->ANAC58      <---------ANAC58    --------->LBD16        <---------YAB1 --------->ANAC46     <---------LBD16 ---------->DOF2           --------->YAB1 ---------->DOF2   taaacgcacgatcaaagagaaaattgcgggacgcagcagcaaatgcgcgaaacgtttttggaccaattctaatttctaaagtaacgcgataaatctaatg  5392700                                            <-----------RAV1(1)                                           ------>ZmHOX2a(2)                                          <------ZmHOX2a(2)                                         <---------AGP1                                         <---------ARR14(2)                                      --------->TOE2(1)                                      --------->TOE1(1)                                     =============HOX2a_HOX2a                                     <---------LBD16                                     ------>ZmHOX2a(1)                                    --------->TOE1(2)                              --------->ANAC58                                 --------->ARR11(3)                                --------->ANAC58                                 --------->ARR14(2)                         --------->WOX13(1)                                 <---------ARR11(3)                       ------------>CBF                        ----------->HVH21--------->ARR14(2)             --------->At4g35610        --                  ---------->ID1 <---------ARR14(2)                    --------->MYB59          <----    <---------TOE1(2)   ----------->TGA1<---------CCA1(2)  ---------->DOF2--------->WRKY18(1)   *TSS   cattcccacgatttgtgtttgtccctctgacgaaaaatcctcggatctgttgcattctctccaaagcttgaatcaggtcaatctctcgcaaacttatcca  5392800                                                         <---------------AGL15                                         ------>ZmHOX2a(2)                                        <---------At4g35610<----------DOF2                                 <------MYB46(1)     <---------ARR14(2)                                 <------MYB83        --------->ARR14(2)         <---------AHL20(2)   <---------ANAC58      --------->DOF5.7(2)         --------->AHL20(2)   <---------ANAC58    <---------ANAC46   ----------->GT1            <---------ANAC46    <---------ANAC58 ------->YAB1        <---------ANAC46----------->ARR10   --------------->AGL15  <---------ANAC58 --------CBF   <---------YAB1--------->ATHB12     <---------ANAC58              <---------ANAC58<----   ttgatgagtatataattttgtttgtgggtattgcttggtttgatctgctaatgcgtttactctttctgggtattgttcgattgcttctctctctctctct  5392900                        <---------ZAT6                    <---------AHL20(2)                    <---------YAB1                            --------->YAB1    ------>ZmHOX2a(2)                   <---------AHL20(2)                        <---------ATHB51 --------->ARR11(3)                 <---------YAB1                              --------->ICU4   <---------ARR11(3)        --------->AHL20(2)                                <---------YAB1 <---------MYB46(3)        <---------AHL20(2)                            <----------DOF2   <----------DOF2 ------DOF2 ----------->GT1         --------->YAB1    <---------DAG2   <---------MYB52(1)   tttgtttgaataaaatgttatttttattgttaacagaatcatagtagatcgaatcgctttacaattatgttccgcttgttgatctcaatctgtagcagtt  5393000                                                       <------MYB83                                                       <------MYB46(1)                                                      <---------TOE2(3)                                                  --------->ATHB12                                             ------>ZmHOX2a(2)                                            <<<<<<<<<GATA-1                                            <<<<<<<<<GATA-4                                            <------ZmHOX2a(2)                                            <<<<<<<<<GATA-3                                            <---------GLK1(1)              --------->TOE1(2)            --------->ARR14(2)         <---------ZAT6             ---------->DOF2   --------->MYB59       --------->SPL7       --------->WRKY38(1)  <---------YAB1              <---------TOE1(2)     <---------ZAT14        --------->WRKY12<<<<<<<<<GATA-2                 <---------ANAC46     <---------SPL1(2) ------>ZmHOX2a(1)   <---------ARR11(3)             <---------ANAC58     <---------SPL7    <---------MYB52(1)  --------->ARR11(3)             ------>ZmHOX2a(2)     --------->ZAT18   =============================HOX2a_HOX2a           <---------ANAC46     --------->ZAT14   ============================HOX2a_HOX2a            <---------ANAC58   --------------->AtSPL3--------->MYB52(2)<---------ARR14(2)           --------->ARR14(2)      <---- <-----------GT1      --------->TOE2(3)    <---------AGP1               <---------ARR14(2)    <------ <---------WRKY18(1)<------ZmHOX2a(2)     <---------CCA1(2)  <---------TOE2(3)            <---------GLK1(2)   ttttgaccgtactgttcatgcgatccttagttgactgagaaagtagatctcttgattaggtttgaggctatggggatcgtgtgtttggattagattatga  5393100      <---------ICU4      --------->YAB1                        <----------DOF2     --------->ICU4                        <---------ANAC58                   <---------YAB1     <---------ATHB12                      <---------ANAC58    <---------ANAC46   --------->YAB1                      <---------At4g35610     <---------ANAC58 -----GLK1(2)                     --------->DAG2               <---------ANAC58 ---YAB1     --------->ATHB12   ---------->DOF2     <---------MYB52(1)    <---------GLK1(2)   -------   ttctctaataatcactgattagtgatttcatctaaaaaggctgatgcttttgcccttaatttgtttcgtttagactgattctgtttggaggtttttctga  5393200                                                          ------>ZmHOX2a(2)                                                        --------->ARR11(3)                                                        <---------ARR11(3)                                                   --------->DAG2                     --------->At4g35610  <------ZmHOX2a(2)                 <---------ARR14(2)      --------->ARR11(3)                 ------->TEIL            --------->ARR14(2)               ---------->DOF2                 --------->ARR14(2)      <---------ARR11(3)            <----------DOF2                <---------CCA1(2)        <---------ARR14(2)   --------->YAB1  <---------GLK1(2)------      <---------TOE2(3)     ---------->DOF2    --------->TOE2(3) <---------ICU4 <---------MYB46(3)  < ---->HVH21   --------->ANAC55(2)<----------DOF2  ---------->DOF2--------->ARR14(2)            <-----   caaagtttaagtttttatgtatctgcagaagaaagcttttgaagatcagcctaaaagtgatctctcataactgcttaaaagattgttgaaactcgaagat  5393300  Previous    Next  AGI:  At5g16505.1    Description:  transposable element gene. Mutator-like transposase family, has a 1.4e-59 P-value blast match to GB:AAA21566 mudrA of transposon=""MuDR"" (MuDr-element) (Zea mays) Range:  from: 5390029    to: 5392386    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g16510.1    Description:  reversibly glycosylated polypeptide, putative. similar to RGP1 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1) [Arabidopsis thaliana] (TAIR:AT3G02230.1); similar to Alpha-1,4-glucan-protein synthase (UDP-forming) [Medicago truncatula] (GB:ABD28560.1); contains InterPro domain Alpha-1,4-glucan-protein synthase, UDP-forming; (InterPro:IPR004901) Range:  from: 5392796    to: 5394571    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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