Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                --------->GLK1(2)            <<<<<<<<<TBF1                                     <---------ARR14(2)                    -        --------->GLK1(2)                                     <---------ARR11(3)                    <       <---------ARR11(3)                                     <-----------ARR10           <-------GAMYB       --------->ARR11(3)                   --------->At4g35610                         <---------TOE2(3)   ---------->DOF2                      --------->CCA1(2)     --------->ARR14(2)    --------->CCA1(2)  --------->AHL20(2)                    ------------------------>ANAC81            <---------ARR11(3) -------AHL20(2)       <---------AHL20(2)   <---------At4g35610          <---------WOX13(1)<--------P ------AHL20(2)        --------->AHL20(2)<-------TEIL        <---------GLK1(2)------>ZmHOX2a(2)     - ----->AHL20(2)  <----------DOF2   ---------->DOF2           <---------ARR14(1)    --------->ARR11(3) ->GT1 <---------GLK1(2)       <-----------GT1      ---------->DOF2 --------->ANAC55(2) <---------TOE1(3)   taaataaaagattcttcttctttttttaatttttaacaaaagattcagaagaatgaaagaagagaatcttacatgatggatcgaagatttagggttgata  5382500                                                                            --------->YAB1                                                                        <------NtERF2                                                                      <---------ANAC46                                                                     --------->At4g35610                                                                     <---------At4g35610                                                                     --------->ATERF1(1)                                                                     <------NtERF2                                                                     --------->RAP2.3(1)                                                                     <---------LBD16                                                                    <---------ERF1                                                                    <---------RAP2.3(1)                                                                    <---------DEAR4(2)                                                                    <---------RRTF1(1)                                                                    ------>NtERF2                                                                    <---------ATERF1(1)                                                                    <---------RAP2.6(1)                                                                    <---------ORA47(2)                                                                   <---------RRTF1(2)                                                                   <---------DEAR3(1)                                ------>ZmHOX2a(2)                  <---------RAP2.3(3)                               <------ZmHOX2a(2)                   <---------RRTF1(3)                       --------->GLK1(1)                           --------->DEAR3(1)                       <---------GLK1(1)                           <---------ATERF1(2)                     =================HOX2a_HOX2a                  <---------RAP2.3(2)               --------->At4g35610                                 <---------RAP2.6(2)               <---------At4g35610                                 --------->ATERF1(2)               --------->ZAT2 --------->ARR14(2)                  --------->ATERF1(1)               <---------ZAT2 <---------ARR14(2)                  <---------LBD16            <-----------------AGL1--------->At5g28300             <---------At4g35610             <--    --------->LBD16  <------ZmHOX2a(1)                            <---------ABI4(1)             ----- -------->ARR14(2)   ==================HOX2a_HOX2a               <---------RAP2.3(1)           <----- ---------ARR14(2)<-----------RAV1(2)                           <---------DEAR3(1)         --------->TOE2(3) -------->GLK1(2) <---------LBD16----------->GT1     --------------------->WRI1         -------------   agaatccgaaattctccagctcaggaaacccagatcggtaaatttcatcttctaccattgaaaaattcggcggcggaatcaaaacttctccatcgttatc  5382600                                                                       --------->ANAC58                                                                       --------->ANAC58                                                                      ----------->RAV1(1)                                                               --------->CCA1(2) -------YAB1                                                  --------->TOE1(2) ---->YAB1                                                  --------->ANAC58 ----YAB1---------->DOF2              ------>ZmHOX2a(1)     --------->ANAC58 -------->WRI1        --------->HSFC1(2)                  ---------->DOF2---------->DOF2         ----   atcatccacaattaagcccatcgacgtttctatctccctccttctctcaattgggagacagaaagctacgagcaccaaagagagacagagagggagagag  5382700                                                                      <---------AHL20(2)            -                                                                     <---------YAB1                 <                                                                   -------->HAHB4                   -                                             ----------->GT1       --------->ATHB12         ---------            --------->GLK1(2)              ---------->DOF2        --------->ICU4            <--------            <---------ARR11(3)      --------->WRKY12              <---------ATHB12       --------->ALFIN1       --------->LBD16          <-------TEIL <----------ID1   --------->AHL20(2)  --------->YAB1    <   <---------ARR14(2)          --------->GLK1(2)            <----------DOF2       <---------ICU4   --   --------->ARR14(2)          --------->ARR14(1)          --------->TOE2(3)     --------->ICU4 <---- ------->GT1--------->ARR11(3)<---------GLK1(2)            --------->TOE1(3)   --------->YAB1   -----   agcaaaatccccaaaatctagagagagatagagattcgttgaacaaaaagaaaaaaaaaaacctttaaatgattaatgggataatcatcaagtggggttt  5382800                                                                       ----------->GT1                                                                   --------->ARR14(2)                                                                   <---------ARR14(2)  <---------YAB1                                               <---------LBD16                      - -------->ATHB51                                               <-----------------AGL1               *TSS ---------AHL20(2)                                             <-----------------AG                 - -------->AHL20(2)                                            <-----------GT1            --------->TOE2(3) -->GT1                                                   <---------CCA1(1)           <-----------GT1 -ANAC46  ---------->DOF2                                 <---------RVE1(1)      ----------->GT1    - ---------ICU4                                           --------->ARR11(3)  --------->AHL20(2)     - ------->ICU4            ----------->TGA1                <---------GLK1(2)   <---------AHL20(2)    -- -----AHL20(2)      ---------->DOF2    <------ZmHOX2a(1) <---------ARR11(3)  --------->AHL20(1)  <--- ---->AHL20(2)<----------ID1         <---------TOE2(3)  <---------RVE1(1)   --------->AHL20(2)   ----   aattattttttaaaaagagacaaaaagatgacgaagattaaggagtttttttgttaagagattttttcggatttggaaaaaaattgttaaacctttgaaa  5382900                                                                                              <------           <------------CBF                                                              <-------MYC3 -------->ANAC46                  <---------TOE1(3)                                      ------->MYC3 -------->DEAR3(1)               <-----------RAV1(2)                                    <---------O2 -------->RAP2.6(2)          ------>ZmHOX2a(1)                                         <<<<<<<<<<ABI5 ------>GAMYB              ------>ZmHOX2a(2)                                           <<<<<<<<<<BZIP12 ------->MYB46(3)         <------ZmHOX2a(2)                                        <---------YAB1 ------ARR14(2)          --------->ARR14(2)<---------TOE1(3)                     <---------ICU4     - ----->ARR14(2)          <---------ARR14(2)<---------TOE2(3)                   <---------GLK1(2)    -   aaccgccattagagattgttcttgttggatcctcttcaggtttttaagggaatgttttgttttcgctgtaatctctcaccagattatgacacgttgttac  5383000                                                                                        <-------TEIL                                                                                       --------->ARR14(1)                             <---------HSFB2a(1)                                      <---------GLK1(2)                 =====================================================================MADS_MADS<-----                 <-----------------AG                                                 --------->ARR11(1)              --------->WRKY12     ------>ZmHOX2a(1)                            <------ZmHOX2a(2)   -       <---------DAG2        <---------HSFC1(2)                       <---------------AGL15    ------       <----------DOF2  ----------->GT1                               --------------->AGL15   <------ ------>ZmHOX2a(1)  --------->ATHB12                                 <-----------------AGL3   ------- -----GT1   <-------GAMYB    --------->HSFC1(2)                      ----------------->AGL3<---------MYB52(1) -------->TOE2(3)<-----------------AGL1       ---------->DOF2    <---------HSFB2a(1)  --------->ARR14(2) -------------------->WRI1   --------->HSFB2a(1)  ----------->GT1--------->HSFB2a(1)  <---------ARR14(2)   atccttcaacttttcgttgaaccgattgggaaatttcctattttgacttaaagagtcaatttttagaattttctattaatagatcaaagattcgttatga  5383100                                                                                                  ===                                                                               <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                              <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                             <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                            <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                          <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   ----------->RAV1(1)                           <---------CCA1(2)        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   --------->ANAC46             <---------AHL20(2)                       <------------------------ANAC81 ----ICU4                    ----------->GT1    ------->TEIL<----------DOF2<xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) -------->PCF2             ---------->DOF2   <---------ANAC46         <----------DOF2             --- --->YAB1                --------->HSFB2a(2)<---------TOE1(3)       <------------------------ANAC81 ---YAB1         <---------At4g35610       --------->MYB52(1)    <----------DOF2 <xxxxxxxxxxxxxxxxxxxsmallRNA(si3) -->ICU4  <---------YAB1 <---------HSFB2a(2)<---------TOE2(3)  <------------------------ANAC81 <-----   tgaccccacaatatgattcaactgtttctaaaagttaatttggattaacgtatatcaatattcttttcttttctttttttttttttttttttttttttta  5383200                                           xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                  --------------->AGL15                                  <---------------AGL15                                  <---------HSFB2a(2)                                  --------->HSFB2a(2)                         --------------->AtSPL8              ---------->DOF2                         --------->ANAC46----------->GT1 <----------ID1              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  --------->ANAC46             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  --------->ANAC58            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   --------->ANAC58           <---------ZAT14           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   ------>MYB46(1)             --------->ZAT14           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   ------>MYB83     ----------->GT1         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     --------->TOE1(2) --------->DAG2        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     --------->TOE2(2)---------->DOF2        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         --------       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  ------->MYC3    --------->YAB1  --------->ARR14(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) =================================================MADS_MADS------------------------>ANAC81  --------- ------------>AGL15 <---------ARR14(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <---------ZAT18 ------GT1<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<-------MYC3   cttcatttataaaacgatatcgaatacacagtacttctaaaacgagtaacacctacgaaacaacaaagaaaagtaaaacagagcacatgatcaaataaag  5383300                   <-------TEIL               <---------------AtSPL8             <---------ANAC58             <---------ANAC58             <---------ANAC46            <-----------------------TaNAC69(2)                         <---------ANAC58        <---------O2                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   ------>MYB46(1) --------->SPL7      <---------ARR14(2)      <------ZmHOX2a(2)    --------->GLK1(2)   ------>MYB83<---------------AtSPL3  --------->ARR14(2)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <---------MYB59 <---------SPL7    ------>NtERF2              --------->ARR11(3)   <---------GLK1(2) -->DOF2--------->O2        --------->ATHB12                 <------ZmHOX2a(1)   ----------->ARR10--- >AHL20(2)--------->ALFIN1<<<<<<<<<<<<<<<<<LFY  <---------At4g35610    <---------ANAC58<----------DOF2   agaccgaaccaagtggcgaggtacgataaaccattggggccaatacgttgagctcgtgagagaggatcaagatgagtgcgaataagattctttatctcca  5383400  Previous    Next  AGI:  At5g16480.1    Description:  tyrosine specific protein phosphatase family protein. similar to phosphoprotein phosphatase [Arabidopsis thaliana] (TAIR:AT3G02800.1); similar to Tyrosine specific protein phosphatase and dual specificity protein phosphatase; Putative tyrosine phosphatase [Medicago truncatula] (GB:ABD28384.1); contains InterPro domain Protein-tyrosine phosphatase, SIW14-like (InterPro:IPR004861) Range:  from: 5381116    to: 5382900    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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