Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          <---------ARR14(2)                        <---------GLK1(2)                  --------->AHL20(2)        --------->AHL20(2)                                 <---------AHL20(2)        <---------AHL20(2)                                --------->YAB1       --------->AHL20(1)                             <---------AHL20(2)       <---------AHL20(1)                             --------->AHL20(2)         --------->ICU4       --------->AHL20(2)                            --------->AHL20(2)        --------->ANAC55(1)       <---------AHL20(2)                   <---------ARR11(3)                 --------->ANAC55(2)      --------------->AGL15    ---------->ID1  <-----------GT1                 --------->ANAC46      <---------------AGL15  <-----------RAV1(1)   <----------DOF2             <---------ANAC55(2)   --------->AHL20(2)   --------->ARR14(2)  --------->AHL20(1)     <----------DOF2   <---------ICU4   <---------AHL20(2)   <---------ARR11(3)  --------->ARR11(3)    <---------ANAC58  --------->ICU4  --------->AHL20(2)    --------->ARR11(3)  <---------AHL20(1)    <---------ANAC58<---------ICU4    -   tacatttaatttatttagaaatggcagatttttgttgtctatggaatattttccttttaattttaatggctttagattaacacataattatgtcttaata  5371200           <---------AHL20(2)          <---------AHL20(2)          --------->AHL20(2)       <---------ICU4       <--------ATHB1                                                              --------->YAB1       --------->ATHB51                                                           <---------AHL20(2)       --------->YAB1                                                   <---------YAB1       -------->HAHB4                                                  --------->AHL20(2)       <--------HAHB4                                                  <---------AHL20(2)      --------->AHL20(2)                                          <---------AHL20(1)      --------->ICU4                                              --------->AHL20(1)      <---------ATHB51                                            --------->ARR11(3)   <---------YAB1      <---------YAB1                                              <---------ARR11(3)   <---------AHL20(2)    --------->YAB1                                                --------->AHL20(2)  <---------AHL20(1) --------->TOE2(3)       --------->MYB52(2)                       <---------AHL20(2)<---------AHL20(2) ---------->GT1        <---------MYB52(1)                   ----------->GT1 ----------->GT1 ---------   cattgttaataattaaatgacataagttagtttgaatacaatactagtataaatctcatgaattgaaatatattaaaatagtatataatattattcatag  5371300                                                             <----------DOF2                                                  ----------->GT1                                            --------->AHL20(1)          <-----------GT1                                 --------->AHL20(2)         <---------ICU4                                 <---------AHL20(2)     <---------AHL20(2)                     <-----                        <---------TOE2(3)   <---------AHL20(1)     <---------AHL20(2)        --------                --------->MYB52(1)          <---------ARR11(3)<---------YAB1                 <-------              <---------MYB52(2)--------->YAB1  ---------->DOF2   --------->AHL20(2)        --------- >YAB1  --------->AHL20(2)     <---------YAB1  <---------AHL20(2)<---------YAB1             <--------   aaaatgtcaatataaaactaactattgatgtttattaaaatgtcaatatataaagtatataatctttattaaaaataccattcttgatgttttaatcatg  5371400                                        ---------->DOF2                                   --------->AHL20(2)                               <---------AHL20(2)                               --------->AHL20(1)                               --------->AHL20(2)                              --------->AHL20(2)                          <---------AHL20(2)                               <-----------RAV1(1)                          --------->AHL20(2)                        --------->DAG2 ----YAB1                 <---------AHL20(1)                       ---------->DOF2 ->YAB1                   --------->AHL20(1)   <---------YAB1   <---------------AGL15 --ICU4                  <---------ATHB12--------->DAG2         --------->TOE2(3)    <---------GLK1(2) >ICU4           <---------ICU4<---------AHL20(1)               --------------->AGL15--------->ARR14(2) -ATHB12     <---------YAB1   <---------AHL20(2)--------->YAB1 ----------------->AGL1<---------ARR14(2)   gttacatttgtcaatttgattatgccaataaaataaattgaataaagttatcaaaacaaacaaataccataaagtgaatgtcgctcggattctcatctag  5371500                                                                         ------->TEIL                                                                  <---------AHL20(2)                                   --------->ARR14(2)           <---------YAB1                                   <---------ARR14(2)         <---------AHL20(2)       <---------ANAC55(2)                                <---------ANAC46              --------->AHL20(2)       --------->ANAC46                               <---------TOE2(3)          <---------AHL20(2)           --------->ANAC58                               <---------TOE1(3)          --------->AHL20(2)           --------->ANAC55(2)                        <---------YAB1                   <---------AHL20(2)            --------->ANAC55(1)                    <---------AHL20(1)                   --------->AHL20(1)      <---------ZAT18    <                    --------->ARR11(3)              --------->AHL20(2)  <---------AtLEC2<---------MYB59                    --------->AHL20(1)              <---------AHL20(2)<---------YAB1   --------->ANAC58                  --------->AHL20(1)          <-----------GT1<---------AHL20(2)  --------->ZAT18  <--                  <---------ARR11(3)   <---------MYB59   --------->AHL20(2)     <---------ANAC58 ----                  <---------AHL20(1)  --------->ANAC46   <---------AHL20(1)     <---------ANAC58-----   tactaaattagacaatccaaaatattttgatttaacgtataccgaattttacatttaaatttatttatttttatgcatgtttgcgaactacgtaacttat  5371600          <---------YAB1         <---------ARR11(3)    ------------>CBF                                                              --------->AHL20(2)   --------->YAB1             *TSS                                                <---------AHL20(2)   <-----------GT1            --------->YAB1                                   <----------DOF2 ---------ICU4           ------->GAMYB                   <-----------GT1    <---------AHL20(2) -------AHL20(2)        --------->ANAC46      --------->TOE2(2)         --------->AHL20(2) ----->YAB1           <-----------GT1         --------->TOE1(2)         <---------AHL20(2) ------>TBP           --------->MYB52(1) <---------AHL20(2)          <---------ICU4    <-----------GT1   aaaaatcacaatatgtttacaaattaacggaataaaaattcaaataatcgtgcgaaaattaacctagttcatatttattttcttttaattttctcttctg  5371700                   <---------AHL20(2)                   <---------ICU4                   -------->HAHB4                   --------->ATHB51                   -------->ATHB1                  <---------ATHB12                  <---------YAB1                  <---------ATHB51                  --------->ICU4               ------------>ATHB5                    --------->ANAC58           <------MYB46(1)                           --------->ANAC46                  <---------ANAC58           <------MYB83                              --------->ANAC58                  <---------ANAC58          <---------AtMYB61                          --------->ANAC55(1)              <---------At4g35610          --------->MYB59                       ---------->DOF2       <---------At4g35610         <--------P--------->ATHB12   ---------->DOF2--------->ANAC55(2)              --------->At4g35610   <---------AHL20(2)              --------->YAB1    <---------ANAC55(2)            <-----------GT1   tatatttataggttggtctaattattgaaaaaatcaaaaataaagagaaacaaagacgtaatccaaaatgtctactgcttcactatttagcttcccttca  5371800                                                                                                  ---                                                                                                 ----                                                                                                 <---                                                                                                -----                                                                                                <----                                                                                                <----                                                                                               ------                                                                                               <-----                                                                                               <-----                                                                                              -------                                                                                              -------                                                                                              <------                                                                                             --------                                                                                             --------                                                                                             --------                                                                                             --------                                                                                             --------                                                                                            <--------                                                                                            ---------                                                                                            ------>NtERF2                                                                                            <--------                                                                                           --------->ANAC46                                                                                           <---------DEAR3(1)                                                                                          <---------LBD16                                                                                        =============                ------>ZmHOX2a(1)                                                      ==============          ------>ZmHOX2a(2)                                                            --------->GLK1(1)          =============HOX2a_HOX2a                                                     <---------GLK1(1)         <------ZmHOX2a(2)                                                             <------ZmHOX2a(2)         ==============HOX2a_HOX2a                                                    --------->ARR14(2)        <---------ARR11(3)                                      <---------ALFIN1   ------>ZmHOX2a(2)        <---------ARR14(2)                              <---------ARR14(2)        <------ZmHOX2a(2)        --------->ARR11(3)                              --------->ARR14(2)        ===================        --------->ARR14(2)                <<<<<<<<<TBF1 <---------GLK1(2)        <---------ARR14(2)       --------->At4g35610             <<<<<<<<<TBF1  --------->LBD16--------->ANAC46 <---------ARR14(2)       <---------At4g35610          <<<<<<<<<TBF1    --------->HSFB2a(2) <----------DOF2------>ZmHOX2a(2)  <---------At4g35610            <<<<<<<<<TBF1  ------>ZmHOX2a(1)  <---------ALFIN1==================  --------->At4g35610       <------------------------ANAC81<-----------GT1       --------->ARR14(2)   tttcatctcagatccctccttccttctctctcttcttcttcttcttcttcctcttcccgatttgcccctccccgtctttctccgatccgatctccggcgc  5371900       --------->ZAT2       <---------ZAT2     <-----------RAV1(2) <------ZmHOX2a(1) --->NtERF2 ----->DEAR3(1) ------ANAC46 ---->ATERF1(1) --NtERF2 ------CDC5 >NtERF2 ----ATERF1(1) ----RAP2.3(1)                          <---------WRKY18(1) -->DEAR3(1)                     <------NtERF2--------->GLK1(2) -->RAP2.3(2)                   <---------RAP2.6(3) ---DEAR3(1)                    <---------ATERF1(1) ->ERF1--------->At4g35610      <-----------TGA1 ->ATERF1(1)                    <-----------HVH21 ->RRTF1(1)                    --------->ANAC46 ->RAP2.6(1)                   --------->RAP2.3(3) ->RAP2.3(1)                   --------->DEAR3(1) -ATERF1(1)  <---------MYB46(3)--------->RAP2.6(2) >LBD16<---------At4g35610   --------->At4g35610 -RAP2.3(1)  <---------DEAR3(2)--------->RAP2.3(2) =======HOX2a_HOX2a          --------->ZAT2  <---------GLK1(2) =======HOX2a_HOX2a          <---------At4g35610                                       <---------YAB1 =======HOX2a_HOX2a   <----------DOF2  ----------->HVH21                 <---------ZAT14 =======HOX2a_HOX2a   <---------DAG2 <---------ICU4<---------TOE2(3)     --------->ZAT14      XXXXXXX   cgaggactcagctgtctgttcgcgctttctcagccgtcaccatgaccgattctaacgatgctggaatggatgctgttcagagacgactcatgtttgaaga  5372000                                              --------->ATHB12                                            <---------WOX13(1)                        ------->TEIL                                           <-------GAMYB                              <-----------ARR10                                          <------MYB46(1)                             --------->GLK1(2)                                          <------MYB83                             --------->ANAC58                                          <---------MYB46(3)                       --------->ANAC46                                         --------->MYB59          --------->LBD16  --------->ANAC58                               --------->ATHB12                  --------->ANAC46 --------->LBD16                 <----------DOF2         <---------AtMYB61 <----------DOF2  <---------At4g35610   --- XXXXXXXXXXXXXXXX>MIR163      <---------YAB1<--------P     <---------DAG2<-------TEIL<---------GLK1(2)   cgagtgagaaattcgattccttttcttcgattttgatttgggtttggttgatttgggtttactttatccgaaaaattcatcttccacgaatctcatttga  5372100  Previous    Next  AGI:  At5g16440.1    Description:  IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1); isopentenyl-diphosphate delta-isomerase. Identical to Isopentenyl-diphosphate Delta-isomerase I (IPP1) [Arabidopsis Thaliana] (GB:Q38929;GB:Q42552;GB:Q9FFE1); similar to IDI2/IPIAT1/IPP2 (ISOPENTENYL DIPHOSPHATE ISOMERASE 2, ISOPENTENYL PYROPHOSPHATE:DIMETHYLLALLYL PYROPHOSPHATE ISOMERASE 2), isopentenyl-diphosphate delta-isomerase [Arabidopsis thaliana] (TAIR:AT3G02780.1); similar to isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Brassica oleracea var. botrytis] (GB:AAF36996.1); contains InterPro domain Isopentenyl-diphosphate delta-isomerase; (InterPro:IPR002667); contains Inter Range:  from: 5371630    to: 5373738    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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