Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                         --------->ARR14(2)                                                                                       <---------ARR14(2)                                                                           --------->ANAC58        <-------TEIL                   --------->ANAC58                    ----------->GT1 -------->GLK1(2)                      --------->ANAC58                    <---------ANAC55(2) -------->ARR11(3)                    <---------LBD16                      --------->ANAC55(2) ---------ARR11(3)<-----------GT1   ----------->HVH21                      --------->ANAC58 -----------ARR10<-----------GT1 --------->TOE2(2)                      <---------ATHB12 --->YAB1     ------->TEIL       --------->TOE1(2)                    --------->WOX13(1)   aaaatctaagtacatgaattttccaattctctgaacatgcgacggaatcaagtagttccaaacaagagattgcaatcaagtaattccaaaattcgcacca  5364900                                                                    <------NtERF2                                                                  <---------DEAR3(1)                                                                  <---------RAP2.3(2)                                                                 --------->ATERF1(1)                                                                <---------ATERF1(1)                                                               <---------DEAR3(1)                                              <------ZmHOX2a(1)--------->DEAR3(1)              ------                                  --------->ZAT14              <---------ATERF1(2)             ------                                  <---------ZAT18      --------->TOE2(3)                 <-------MYC3                                  --------->ZAT18      --------->YAB1 <----------DOF2    ------->MYC2                               <---------ANAC46       <<<<<<<<<ARR2------>NtERF2         ------->MYC3                          --------->ZAT6<-----------HVH21     <---------LBD16            <-------MYC2     >>>>>>>>>TBF1    --------->DOF5.7(2) <---------ANAC46  <-----------GT1             <---------ANAC58  >>>>>>>>>TBF1------>ZmHOX2a(2)  <---------ZAT14     <<<<<<<<<ARR1<---------RAP2.3(1)  <---------ANAC58   agaagaagaagaagtgatcgaaacgttaccactgagtgtacatgtcgaggacaacaatcttatcaccggcggctttaacaattggccagaacgtgtcctt  5365000           <---------ZAT2           --------->TGA1a           <---------O2           --------->ZAT2           ===================RAV           <---------At4g35610           --------->At4g35610           ----------->RAV1(2)           <---------bZIP60(2)        ----------->HVH21        <---------MYB52(1)       <-----------HVH21                                <---------ALFIN1       <-----------TGA1                                --------->ZAT14           --------->GLK1(2) --      --------->ANAC46                                 <---------ZAT14       --------->HSFB2a(2)  <--   ==================MYC_MYB                          <---------ALFIN1      <---------LBD16       ---   --------->TOE2(2)                             --------->AtMYB61         --------->MYB52(1)  <-----   ------->GAMYB                                --------->ANAC46    <---------ATHB12           ------  --------->MYB46(3)                            --------->bZIP60(2)------>MYB83 <---------GLK1(2)---- -------->P--------->O2                       --------->REM1(1)    ------>MYB46(1)             ------ ------->TEIL     ----------->RAV1(1)         <---------ALFIN1   --------->AtMYB61          <-------- ====================MYC_MYB              --------->At4g35610   --------->MYB46(3)          --------- --->ICU4  <---------TGA1a     <---------At5g28300   --------->ANAC46  ------>ZmHOX2a(1) --------->ANAC46 >ZmHOX2a(1)      --------->MYB52(1)     --------->ANAC46    <------ZmHOX2a(1)--------->LBD16 -------   atcaacctccgtcacctggccaacagtgacattcactgtttctaagctacacctcaccacacaggaaccaatccttctaccggaatctaaaacaccacca  5365100                                                                                     <--------P                                                                                    <---------MYB52(1)                                                                                   <---------DEAR3(2)                                                                                  --------->ATERF1(2)                                                                                  <---------ATERF1(2)                                                                                 --------->ATERF1(1)                                                                                 <------NtERF2                                                                                 --------->RAP2.3(1)                                                                                <---------RRTF1(1)                                                                                <---------RAP2.6(1)                                                                                <---------ATERF1(1)                                                                                ------>NtERF2                                                                                <---------RAP2.3(1)                                                                                <---------ERF1                                                                               --------->DEAR3(1)                                                                               <---------DEAR3(1)                                                                              --------->RAP2.3(1)                                                                              --------->ERF1                                                                              --------->RAP2.6(1)                                                                              --------->ATERF1(1)                                                                              --------->RRTF1(1)                                                                             <---------RAP2.3(1)                                            <---------LBD16                  <---------ATERF1(1)                                           <------ZmHOX2a(2)          --------->ARR11(3)                                   --------->ARR14(2)                 <---------ARR14(2)          --------->ARR14(2)       <---------ARR14(2)     <---------REM1(2)  ------>NtERF2 --------->RAV1(1)              --------->LBD16          <-----------HVH21   --------->LBD16 -------ALFIN1               ------>NtERF2--------->ARR14(2)          <---------ARR11(3) ------>AtMYB61             --------->ANAC58------>ZmHOX2a(2)         --------->ARR14(2) ----ALFIN1                 --------->DEAR3(1)     --------->ALFIN1 ----------->ARR10================ --->AtMYB61                --------->ANAC58=====================================HOX2a_HOX2a ----->MYB46(3)          ----------->HVH21<---------ARR14(2)<---------LBD16 --------->ANAC46 --->DEAR3(1)       <---------ANAC58   <---------HSFB2a(2)----------->HVH21 <---------DEAR3(1) -ALFIN1  --------->GLK1(2)--------->ATERF1(1) <---------MYB52(1)   ---------->TaMYB80 >AtMYB61<---------GLK1(2)<---------ATERF1(1) --------->LBD16<---------O2  <---------LBD16 -->MYB46(3)        <---------ANAC58  <---------LBD16    <----------DOF2  ------>ZmHOX2a(1)   ccaccagaacagaatccaattttcgtcgcgacgcccgaattcgggatccggcagtgctgcttcacgggggaaaatcctccggcgccggtagatgtaatcg  5365200                  <------NtERF2                <---------DEAR3(1)              <-----------HVH21             <---------O2             --------->TGA1a             <---------TGA1a             --------->O2        ---------->DOF2                                                                        ------        ===============bZIP_DOF                                                            <---------      ------->GAMYB                                                                     <---------ARR11(3)      =================MYC_MYB                                                          --------->ARR11(3)    <xxxxxxxxxxxxxxxxxsmallRNA(se3)                                                 <---------ANAC46-   --------->MYB52(1) --------->ALFIN1                                              <---------ZAT6  < ======================MYC_MYB    <------NtERF2          >>>>>>>>>TBF1    ---------->DOF2 ------>ZmHOX2a(2)   gagaataacggaaagacgtcggagatggagcaagtcggagagagagaggcattgttgaagaagaagctcgagtccaaaaaacagtagtgtgatctttcaa  5365300                                                                                     XXXXXXXXXXXXXXXX                                                                                    <---------bZIP60(1)                                                                                    ----------->GT1                                                                                 <---------MYB52(1)                                                                                <-----------HVH21                                                                               <---------ANAC58   --------->TOE2(2)                                                         <---------At5g28300   <---------LBD16                                                        <---------ANAC58       ----   --------->TOE1(2)                  --------->ALFIN1               <---------ARR14(2)          <---  <---------ZAT2             <---------YAB1                          <---------GLK1(2)------------>CBF  ----------->RAV1(2)       --------->AHL20(2)                       --------->ARR14(2)    <--------ATHB1 ---->DOF2     <---------YAB1<---------AHL20(2)                      <---------ARR11(3)    --------->YAB1 -DOF2      <----------DOF2 <---------AHL20(2)                <------------CBF <---------ANAC58  ---- -------->ARR14(2)--------->GLK1(1)  *TSS        <---------MYB52(1)  --------->ARR11(3)   <---------ATHB12 ---------ARR14(2)<---------GLK1(1)  >>>>>>>>>TAC1     --------->LBD16    <---------ANAC58<---------ATHB51   aggaacctgggagacttttgatttccaaattttaattcgagtgttgttttcgttatccgtgaaatattgtagattttcttaccgtgaggtcaataatacc  5365400                                               <---------ANAC46                                              <---------LBD16                                          <---------ARR14(2)                                       --------->ANAC55(2)                                       <---------ANAC55(2)                                       <---------ANAC58                                       <---------ANAC46                                       <---------ANAC55(1)        --------->MYB52(1)             <---------ANAC58                            ----------->GT1 XXXXX>MIR864-3P            <---------LBD16  <-----------GT1               --------->ATHB51 ----->ANAC46  ---------->DOF2        <---------TOE2(3)             <-------TEIL   <---------ZAT6 --- ------------AGL15    --------->ARR11(3)  ------->TEIL      --------->ANAC58     <---------ANAC46---- ----------->AGL15    <---------ARR11(3)  --------->ARR14(2)--------->ANAC58--------->MYB52(1)  <----   ctcaaatggataacgaagaaagaagacatttggggatgtttacgtattttcgggttcgatggacgcgaggttcagaattatcggagtgtaaaatgacgat  5365500                                                                                                    -                                                                                                  ---     ----------->RAV1(1)                                                                    <--------     <---------ALFIN1                                    --------->ZAT14                    ---------     --------->ANAC46                                  --------->ZAT14                      --------- ------>KAN4(2)                                        --------->At4g35610                  <-------- ----->YAB1                 <---------YAB1<---------YAB1 <---------ZAT18         --------->TOE2(3)<-- --ZmHOX2a(2)              <---------TOE2(3)      --------->WOX13(1) <----------DOF2    --------->YAB1   catacccccacaatgtaaggccaagaattgacgattagtcgattaccattagcaatctgcacactcattttcttttggtttaaacttaaatcaaaatatt  5365600                                   --------->AHL20(2) ----->ZmHOX2a(2)         --------->ANAC58 ------>ARR11(3)          <----------ID1                   --------->AHL20(2) -AHL20(1)                --------->ANAC58                 --------->YAB1 >AHL20(1)              ---------->DOF2       <---------MYB52(1)                        --------->ARR11(3) >ARR11(3)            <---------YAB1         <----------DOF2    <-----------GT1        <---------CCA1(2) -ARR11(3)    <-----------GT1    --------->AHL20(2)        <---------AHL20(2)      <----------DOF2 -------ARR11(3)    --------->YAB1 <---------AHL20(2)   --------->YAB1     --------->YAB1   gatcttaaactgaaatttacaactataaaagccaaatttatataagcctttatttgcataataatataaccaaagtttgataatgctttaaatcttgaga  5365700                                                                                                  ---                                                                                                 ----                                                                                                 <---                                                                                                -----                                                                                                <----                                                              <---------ANAC46                  -----                                                              <---------ANAC58                 ------                                                              <---------ANAC58                 <-----                                                           <----------DOF2                    -------                                                      ------->GAMYB                           <------                                                    --------->At4g35610  --------->ANAC58     -------                                                    <---------At4g35610  --------->ANAC58   ---------             <------ZmHOX2a(1)             <---------ATHB12------>ZmHOX2a(1)     --------->ORA47(1)<-       --------->ETT(2)       <---------HSFC1(2)--------->TOE1(3)     <-------TEIL         --------->ANAC46 <---------MYB46(3)           --------->HSFC1(2)--------->TOE2(3)  --------->At4g35610    <---------LBD16   tagtcgttgtcaacaggattaaacacatgagaagcctcttgttcaataaacctcaactgtcctttcgtaagatgcaagtaaaccgtccaatctccggagc  5365800  Previous    Next  AGI:  At5g16400.1    Description:  ATF2/TRXF2 (THIOREDOXIN F2); thiol-disulfide exchange intermediate. Identical to Thioredoxin F-type 2, chloroplast precursor [Arabidopsis Thaliana] (GB:Q9XFH9); similar to ATF1/TRXF1 (THIOREDOXIN F-TYPE 1), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT3G02730.1); similar to Thioredoxin F-type, chloroplast precursor (Trx-F) (GB:O48897); contains InterPro domain Thioredoxin family (InterPro:IPR015467); contains InterPro domain Thioredoxin-like fold (InterPro:IPR012336); contains InterPro domain Thioredoxin fold (InterPro:IPR012335); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro do Range:  from: 5363664    to: 5365337    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g16410.1    Description:  transferase family protein. similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT1G78990.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69603.1); contains InterPro domain Transferase (InterPro:IPR003480) Range:  from: 5365672    to: 5367388    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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