Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          <---------GLK1(2)                    --------->TGA2(2)                  <<<<<<<<<<AtbZIP1                  --------->ANAC58                  ====================================bZIP_DOF                  --------->bZIP60(1)                  <---------bZIP60(1)                  --------->bZIP60(2)              <-----------HVH21              ------>NtERF2             --------->ANAC58             --------->ANAC46             --------->ANAC58            --------->MYB46(3)            ------>ZmHOX2a(2)            =============================HOX2a_HOX2a            ==========================HOX2a_HOX2a           ==============================HOX2a_HOX2a           <------ZmHOX2a(2)           ===========================HOX2a_HOX2a          --------->ARR14(2)          <---------ARR14(2)        ----------->ARR10 --------->GLK1(1)                               <------ZmHOX2a(2)       --------->SPL7  <---------At4g35610                               --------->ARR14(2)     <---------SPL7<-----------TGA1                                      <---------ARR14(2)    <------MYB46(1)<-----------HVH21                                    <------NtERF2    <------MYB83 ------>NtERF2                                     <---------DEAR3(1)   --------->MYB59--------->O2                                   --------->ARR14(2)   <---------------AtSPL3 <---------GLK1(1)                      --------->GLK1(2)   <---------------AtSPL8<-----------ARR10                       <---------ARR14(2) ----------->AGL15<---------TGA1a                               <---------GLK1(2)             ------>ZmHOX2a(2) ------------AGL15<---------O2 ------>ZmHOX2a(1)              --------->ANAC58               <------ZmHOX2a(2) -------------AG<---------ALFIN1                  <---------------------WRI1        --------->ICU4 -------------AGL3--------->ANAC58         <----------DOF2    --------->ANAC58  <-----------TGA1 <--- -------------AGL2--------->ANAC46    <<<<<<<<<TBF1      <----------ID1<---------MYB46(3)   <-------- -------------AGL1--------->TGA1a ------>ZmHOX2a(1)<---------DEAR3(1)<---------LBD16<---------YAB1   tgaatttggtacgatccgccacgtcagcatctcctccttcttcttctttatcggcgatgaagacaagaatcggcggatcagtcgtcatcatcgagatcgc  5358100                                                                                        <---------ANAC58                                                     --------->MYB52(1)                 <---------ANAC58                                                    ----------->TGA1             <-----------HVH21                                                    ----------->HVH21           <---------ANAC58                          --------->DEAR3(1) <------ZmHOX2a(2)                  <---------ANAC58                          <---------DEAR3(1) --------->CCA1(2)                 <-------TEIL                          <---------ETT(2)  --------->ARR14(2)                 --------->SPL7               ------->GAMYB                --------->AGP1                  <---------ANAC46           <---------WRKY12                 <---------ARR11(3)              <---------ANAC58         <---------ARR11(3)                 <---------ARR14(2)              <---------ANAC58         --------->ARR11(3)                 --------->ARR11(3)             <---------MYB46(3)     <--   ------->GAMYB       --------->O2       ----------->ARR10                <-------TEIL <---------ANAC46  --------->ANAC46     <---------O2   --------->HSFC1(2)                   --------->ABI4(2)     <--- -------DOF2--------->MYB52(1)        <---------HSFC1(2)                  --------->ALFIN1  --------- -ARR11(3)<------ZmHOX2a(2)          --------->GLK1(2) <---------ANAC46<---------DEAR3(1)   <--------   ttcaacggcaagatcaacggagaagacgtcgacgaagagaagcttagatccacagtgacggagaagaacagagacggtgcgtgcgtcgaggcgagtgttg  5358200                                                                                                 ----                     --------->TOE1(2)                                                           ----                   --------->ARR14(2)                                                            <---                   <---------ARR14(2)                                                           -----                 ----------->HVH21                                                              <----                <---------ANAC46                                                            ------>MYB46(1)                --------->DEAR3(1)                                                      --------->ARR14(2)               <------NtERF2                                                        --------->TGA2(2)               --------->ATERF1(1)                                                 --------->TOE2(3)               <---------LBD16                                                     <-----------TGA1              <---------RAP2.3(1)                                                  <-----------HVH21            --------->ZAT18                                                       --------->bZIP60(2)      <---------TOE2(3)                 <---------At4g35610   XXXXXXXXXXXXXXXXXXXXX>MIR2936 ------>MYB83 ---------RAV1(1)--------->LBD16        <---------ZAT2     <---------ARR14(2)     --------->ANAC58 ------TOE2(3)------>NtERF2     <---------ZAT14        <------NtERF2              --------->ANAC58 >ALFIN1<------ZmHOX2a(1)       --------->ZAT14       --------->LBD16             --------->ANAC46  < -ZAT6<---------TOE1(3)       --------->At4g35610   <---------LBD16     <---------ZAT14 <---------ARR14(2)   atgttgttgaggattgcgccggacatgggaacagcaaactggagctcgtacatagccggagtattgggagagagaacagagactacgtcagacctgccga  5358300                                                          --------->REM1(2)                                                        <-------MYC4                                                        <-------PIF5                                                        ------->MYC4                                                        ------->PIF5                                                        ------->MYC3                                                        <-------MYC3                                                        ------->MYC2                                                        <-------MYC2                                                       --------->O2                            <------NtERF2              <---------O2                           --------->LBD16             <--------ABF1                         <---------LBD16               <---------ANAC55(2)                         ------->MYC3                  --------->TGA1a                         <-------MYC3                  <---------ANAC46                        --------->O2                  ------>NtERF2                        <---------O2              --------->ANAC58                       ------>NtERF2              --------->ANAC55(1)                               -                      <---------ALFIN1            --------->ANAC58                               <--- ----->GLK1(2)       ----------->HVH21          <-----------GT1   --------->ALFIN1              <---- ----->ARR14(2)     ------>NtERF2--------->MYB52(1)  <---------ALFIN1 --------->At4g35610  --------->ZAT14 ------ARR14(2)    --------->ANAC58        --------->MYB52(2)<---------DOF5.7(2)       <------------- ---->ARR14(2)     --------->ANAC58 ------->GAMYB --------->ANAC46<-----------RAV1(1)  <------------- -----ARR14(2)     --------->ANAC46 =============================MYC_MYB ------>NtERF2 -------------- ---------YAB1     --------->RAP2.6(2)<---------TOE2(2)<---------TGA1a<---------At4g35610  <-------TEIL   ttccgattgaagacagagaagacgccacgcggagacaacggaggtttgtttcacgccacgtgtaaacggtgttgctgccataaacgatggaggtacagtc  5358400             --------->ATERF1(1)             <------NtERF2             <---------At4g35610             --------->At4g35610            <---------RAP2.3(1)            <<<<<<<<<AtERF-3            <<<<<<<<<AtERF-4            <<<<<<<<<AtERF-1            <<<<<<<<<AtERF-2            <<<<<<<<<AtERF-5            <<<<<<<<<AtERF-7            <---------ATERF1(1)            <---------RRTF1(1)            <---------ERF1            ------>NtERF2                                 --------->RAP2.3(1)           <---------RAP2.3(2)                            --------->ATERF1(1)           --------->ATERF1(2)                           --------->LBD16           <---------ATERF1(2)                           <---------ORA47(2)           <---------DEAR3(1)                   <---------ANAC46           <---------RAP2.6(2)                 --------->ATERF1(1)           <<<<<<<<<<AtTINY2                   <------NtERF2           <---------ANAC58                   ------>NtERF2           <---------ANAC58                   <---------ATERF1(1)           <---------ANAC46                   <---------RAP2.3(1)           <---------RRTF1(3)                 <---------DEAR4(2)           <---------RAP2.3(3)               <---------RAP2.3(2)           <---------RRTF1(2)                <---------RRTF1(3)          <---------------------WRI1         <---------ANAC46          <------NtERF2                      <---------DEAR3(1)          --------->RAP2.6(3)                --------->DEAR3(1)      --------->ATHB12          --------->ATERF1(1)                <---------RAP2.3(3)  <---------ANAC58         <---------MYB46(3)                 <---------ABI4(1)     <---------ANAC58         ------>NtERF2                    <---------DEAR3(1) <---------AtLEC2        --------->ALFIN1                <---------DOF5.7(2)<---------ANAC46        <---------DEAR3(1)              --------->MYB52(1)------>NtERF2   <---------DOF5.7(2)                 <---------WRKY38(1)<------NtERF2  <---------WRKY12                    --------->DOF5.7(2)<---------RAP2.3(1)  --------->ARR14(2)                  <------NtERF2      <---------RRTF1(1)  <---------ARR14(2)                 <-----------HVH21  <---------RAP2.6(2)                <---------WRKY12 --------->DOF5.7(2)                 ------>NtERF2      <---------RRTF1(3)                 <---------WRKY38(1) -------->At5g28300            --------->MYB52(1)       <---------RAP2.3(3)              <-----------HVH21 ------At5g28300               --------->ARR14(2)       <---------RAP2.3(2)             ----------->GT1 -----WRKY38(1)                ------>MYB46(1)<---------ERF1------>NtERF2            <---------ANAC46 --AtSPL8<---------ERF1--------->ANAC46<---------WRKY12 <---------DEAR3(1)           <---------ANAC58 --AtSPL3<---------ATERF1(1)   ------>MYB83------->GAMYB<---------RRTF1(2)           <---------ANAC58 ->AtSPL3--------->ABI4(2)     <---------ARR14(2)      <---------LBD16              --------->ATHB12   accgtaaacggtggcggctctctctaagaaacctatcggcgtcaacggcggcgagtttgcggcgcatggcttcatttgctccatcttgagtggtcaaatg  5358500                                                                                 <------ZmHOX2a(1)                                                                                --------->ANAC46                                                                              --------->HSFB2a(2)                            ----------->GT1                         <---------ANAC58                          <------------CBF                          <---------ANAC58                        --------->AHL20(2)                          --------->ANAC55(2)                        <---------AHL20(2)                          <---------ANAC55(2)                       ----------->TBP                              <---------ANAC46               <---------At4g35610                    ----------->GT1 <---------YAB1            -----               --------->At4g35610                  ---------->DOF2<-----------------------TaNAC69(2)              *TSS  ------>ZmHOX2a(1)<---------ANAC55(2)   ---------->DOF2 --------->ARR11(3)  <<<<<<   tattgttttctaatgtctgctccttataaattgaaaaacacttatctataagagaaaagaaaaaagagtttcgtgattatctaggacaccttggtgatga  5358600                                 --------->ANAC46                                 --------->ANAC58                             ------>ZmHOX2a(2)                            --------->GLK1(1)                            <------ZmHOX2a(2)                           --------->ARR14(2)        <---------TOE2(3)  <---------ARR11(3)        <---------TOE1(3)  --------->ARR11(3)        --------->DAG2     <---------ARR14(2)             --------->AHL20(2)           --------->ZAT14      --------->CCA1(2)    <---------AGP1  <---------ANAC58                   --------->ANAC55(2) ------->CBF          <-----------GT1      <---------ANAC58                   <---------ANAC55(2) <<<<<<<<<<<LFY    <---------ICU4--------->ANAC58   ----------->GT1           --------->ANAC46   caatggagataaggttgacaaatattacagatctcaagccaattggcatgttagatgtaaataaacaaacttgtttgactacgtagcgctatagtctttg  5358700                                                                          <---------TOE2(3)                                                                          <---------TOE1(3)                                                                    <---------------AGL15                                                                    --------------->AGL15     <------ZmHOX2a(1)                                                                    <----------DOF2           -------                                                                    <---------DAG2           --------                                                                 <-----------GT1            <--------                                                  --------->YAB1<-----------GT1             <--------           ----------->HVH21            --------->ANAC58    <---------ARR11(3)          <---------HSFB2a(2)  <---------ICU4--------->ANAC58        --------->ANAC58    --------->ARR11(3)       --------->GLK1(2) --------->ICU4 --------->ANAC58<----------DOF2 <---------WOX13(1) <-----------------AGL3  --------->YAB1   gtcatatttatgtatgacaaggcatacaataccactttgaaaacgcattgaatgatatataagattttaactttttaaggtttcaaaattctataaggat  5358800                                                                          --------->AHL20(1)                                                                          <---------AHL20(1)        <     <---------ICU4       <---------At5g28300                     ----------->GT1                  <- --------->AHL20(2) <---------MYB59                               <---------ANAC46                --- -->YAB1         <-----------GT1                         ----------->HVH21<---------AHL20(2)     <--- --->GT1<-----------GT1  <-----------GT1                 ----------->TGA1--------->YAB1  <---------MYB52(1) -TOE1(3)      <----------DOF2        --------->KAN4(2)--------->At4g35610--------->AHL20(2)   <----- -TOE2(3)     <---------ICU4     ----------->GT1       --------->CCA1(2) --------->AHL20(2)    ------   aaataaaacattaccatctttaccgaattactgtatagtttattcttcagttttaagagatgacgatgatgtgaattatattatacataccgtttgcaga  5358900                               <---------MYB46(3)                              --------->ALFIN1                           <------NtERF2                          --------->LBD16                         <---------ANAC46                        xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                        <---------LBD16                       <xxxxxxxxxxxxxxxxsmallRNA(s)                       --------->MYB52(1)                      ----------->HVH21                      --------->ALFIN1                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                     xxxxxxxxxxxxxxxxx>smallRNA(se3)                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                     xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                     <-------PIF5                     ------->PIF5                    <---------ANAC58                    <---------ANAC58                    xxxxxxxxxxxxxxxx>smallRNA(s)                    <---------TGA1a                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                    --------->TGA1a                   xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                   xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                   xxxxxxxxxxxxxxxxx>smallRNA(si3)                   xxxxxxxxxxxxxxxxx>smallRNA(le3)                   xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                   xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                            <---------ARR14(2)                   xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                             xxxxxxxxxxxxxxxx>smallRNA(s)                   xxxxxxxxxxxxxxx>smallRNA(si3)                                  --------->ARR14(2)                   xxxxxxxxxxxxxxxxx>smallRNA(se3)                               xxxxxxxxxxxxxxxx>smallRNA(s)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                        xxxxxxxxxxxxxxxx>smallRNA(s)                   xxxxxxxxxxxxxxxxxx>smallRNA(se3)                            xxxxxxxxxxxxxxxx>smallRNA(s)                   xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                     <-------TEIL                   xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                        xxxxxxxxxxxxxxxx>smallRNA(s)                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                     xxxxxxxxxxxxxxxx>smallRNA(s)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                   --------->HSFB2a(1)                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                    <---------HSFB2a(1)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   xxxxxxxxxxxxxxxx>smallRNA(s)                   xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                    <---------TOE2(2)                   xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                    <-----------RAV1(2)                   xxxxxxxxxxxxxxxx>smallRNA(le3)                        xxxxxxxxxxxxxxxxx>smallRNA(se3)                   xxxxxxxxxxxxxxx>smallRNA(le3)                         xxxxxxxxxxxxxxxxx>smallRNA(le3)                   xxxxxxxxxxxxxxxx>smallRNA(s)                         xxxxxxxxxxxxxxxx>smallRNA(s)                   xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                  --------->ANAC46                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               --------->LBD16                   *TSS<xxxxxxxxxxxxxxxxsmallRNA(i)                   <---------LBD16                   xxxxxxxxxxxxxxx>smallRNA(fl3)                      xxxxxxxxxxxxxxxx>smallRNA(s)                   xxxxxxxxxxxxxxxx>smallRNA(fl3)                   <---------LBD16                 -                   xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)             xxxxxxxxxxxxxxxx>smallRNA(s)  ------                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)          xxxxxxxxxxxxxxxx>smallRNA(s) <-------                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        xxxxxxxxxxxxxxxx>smallRNA(le3) ------                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)         <----------DOF2xxxxxxxxxxxxxxxx>smallRNA(s)                   xxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <---------ATHB12 <------NtERF2      <---------ANAC58                   xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       xxxxxxxxxxxxxxxx>smallRNA(s)<---------ANAC58                   xxxxxxxxxxxxxxxx>smallRNA(i)      xxxxxxxxxxxxxxxx>smallRNA(si3)      <---------ANAC46 ---------WOX13(1) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) < -----------CBF    xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    --------->ALFIN1<---------TOE1(2)--------->DOF5.7(2) ------>ATHB12     xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--- ------YAB1        xxxxxxxxxxxxxxxxx>smallRNA(fl3)   xxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxx>smallRNA(s) ----At4g35610    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)------ --->At4g35610   <---------ZAT18     <---------LBD16xxxxxxxxxxxxxxxxxxx>smallRNA(i2)  ------>ZmHOX2a(1)   tgattgagacaacaagtagtggacgtgccggagtggttatcgggcatgactagaaatcatgtgggctttgcccgcgcaggttcgaatcctgccgttcacg  5359000  Previous    Next  AGI:  At5g16370.1    Description:  AMP-binding protein, putative. similar to AMP-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G16340.1); similar to AMP-binding protein, putative [Arabidopsis thaliana] (TAIR:AT1G75960.1); similar to AMP-binding protein, putative [Arabidopsis thaliana] (TAIR:AT1G21540.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22162.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN64147.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22160.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) Range:  from: 5356608    to: 5358514    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g16375.1    Description:  pre-tRNA. tRNA-Ser (anticodon: AGA) Range:  from: 5358919    to: 5359000    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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