Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                    <                                                                                                   <-                                                                                                  ---                                                                                                  <--                                                                                                  <xx                                                                                                  xxx                                                                                                 ----                                                                                                 <xxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                <----                                                                                                <xxxx                                                                                                xxxxx                                                                                               <-----                                                                                               <-----                                                                                               <xxxxx                                                                                              <------                                                                                             <xxxxxxx                                                                                            <xxxxxxxx                                                                                            xxxxxxxxx                                                                                            xxxxxxxxx                                                                                           xxxxxxxxxx                                                                                           xxxxxxxxxx                                                                                          <---------GLK1(1)                                                                                     xxxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxx                                                                                 xxxxxxxxxxxxxxxxxxxx                                                                                 xxxxxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                       <---------ANAC46   --------->CCA1(2)                                                                       <---------ANAC58xxxxxxxxxxxxxx                                                                       <---------ANAC58xxxxxxxxxxxxxx                                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   <---------AHL20(2)              <---------YAB1                  <---------At5g28300xxxxxxxxxxxxxxx -------AHL20(1)                   --------->AHL20(2)          --------->YAB1   xxxxxxxxxxxxxxxxxxxxx -------AHL20(2)                   <---------AHL20(2) --------->At4g35610  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2) ------>AHL20(2)        <----------DOF2               <---------At4g35610  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ---GT1    <---------AHL20(2)--------->MYB46(3)   <----------DOF2  xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxx   tttatttttttgttaaatttcattttctttaaccaatataaatgtttcaaaactttagctccgaatagtaactgcgttttgcgctatgggagaaatgcgg  5352200         --------->YAB1 ---------->GT1 ---------MYB46(3) --------DEAR3(1) ------>ABI4(2) -------ZAT18 xxxxxxxxxxxxxxsmallRNA(s) xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                       <---------ZAT14 ----->ALFIN1                                                                         <---------ANAC58 xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                    <---------ANAC58 xxxxxxxxxxxxxx>smallRNA(le3)                                                       xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxx>smallRNA(se3)                                                    xxxxxxxxxxxxxxxxxx -----SPL7                                                                         xxxxxxxxxxxxxxxxxx xxxxxxxxxxxxsmallRNA(s)                                                           xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxx>smallRNA(i)                                                           xxxxxxxxxxxxxxxx>smallRNA(i) ----ANAC58                                                                      xxxxxxxxxxxxxxxx>smallRNA(i) ----ANAC58                                                                   xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxsmallRNA(s)                                                     --------->CCA1(2) ---DEAR3(1)                                                             <---------YAB1  --------->ZAT18 xxxxxxxxxsmallRNA(i)                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxsmallRNA(s)                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) xxxxxxxxxxxxxx>smallRNA(fl3)                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxx>smallRNA(s)                                                 --------->ZAT14xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxx>smallRNA(le3)                                          <---------ZAT14<---------YAB1 xxxxxxxxxxxx>smallRNA(fl3)                                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxx>smallRNA(se3)                                          xxxxxxxxxxxxxxxx>smallRNA(i)   <xxxxx xxxxxxsmallRNA(fl3)                                            <---------ZAT14 <xxxxxxxxxxxxxxxxxxxx xxx>smallRNA(si3)                                              --------->ZAT14xxxxxxxxxxxxxxxxxxxxxx xxx>smallRNA(se3)                                         xxxxxxxxxxxxxxxx>smallRNA(i)  <---------ZAT18 xx>smallRNA(i2)                                         <---------ZAT6 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2) xx>smallRNA(s)--------->YAB1                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <------- xxxxxxxx>smallRNA(si3)     --------->CCA1(2)        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)--------->ALFIN1 x>smallRNA(i)----------->GT1<-------TEIL            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------RAP2.6(2) x>smallRNA(si3)     <-------TEIL    ------->TEIL  <---------YAB1   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxsmallRNA(i)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  <   tgcggttcaaatagtaatgaaaatacatagatacatatgtatatgtagaaattttgatagggttacagcactgttgtgatacggttttgagtgcggtttt  5352300                                                      --------->TGA1a                                                      <---------O2                                                      --------->O2              xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <---------TGA1a             --------->TOE1(3)                        <---------ANAC58             --------->TOE2(3)              <------NtERF2            <-----------------AGL3        <---------DEAR3(1)     ----------->HVH21            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <---------ANAC58     <-----------HVH21                  <---------SPL7===============================================bZIP_DOF    <----------DOF2                    ------>ZmHOX2a(2)       --------->ANAC55(2) xxxx>smallRNA(si3)                   <------ZmHOX2a(2)        <---------ANAC55(2) xxxx>smallRNA(le3)            --------->MYB46(3)     <---------ANAC46 xxxxxxxxxxxxxxxxxxsmallRNA(si3)     <---------ARR14(2)    <---------PCF2 xxxsmallRNA(le3)       <-----------RAV1(2) --------->LBD16<-----------HVH21 >smallRNA(le3)   <---------WOX13(1) --------->ARR14(2) --------->ALFIN1 ---DOF2<---------At5g28300   <------ZmHOX2a(2)      <------NtERF2  <---------AtMYB61 -----------GT1 --------->ATHB12  --------->MYB46(3)<-----------HVH21     <-----------GT1 ---------->DOF2   agttacctttcacagccttaattggttcagggatcaaccgatcgtccgcgttcgcgtcgtgggtcatgtgatggtttagccatttcgaattccaaagcac  5352400                                   ============================bZIP_DOF                              --------->GLK1(1)                              <---------GLK1(1)                              <----------TaMYB80                              --------->CCA1(2)                             --------->ARR14(2)                             ---------->TaMYB80                          --------->LBD16                         <---------ANAC55(2)         --------->ANAC58                         --------->ANAC55(2)         <---------O2                             <------NtERF2                         <---------ANAC46            --------->O2                             <------                    <---------AHL20(2)               --------->TGA1a                         <-------                    <---------ICU4 <----------DOF2   --------->ANAC46                        --------                   <---------AHL20(2)                <---------TGA1a                         <-------                   --------->AHL20(2)                --------->ANAC58                       <--------             ==================================================bZIP_DOF<---------YAB1       <--------             <----------DOF2 <---------ARR14(2)      --------->bZIP60(1)                    <--------         ---------->ID1 <---------LBD16           ------>ZmHOX2a(1) --------->ICU4          <--------        <-----------GT1<-----------GT1    --------->REM1(1)--------->TOE2(3)               <---------LBD16   tcacatgttttatcccttttatttattacgggatatgctttgctacattttcctcacgacacattaatacattattaatgagattggactagtggcgggt  5352500     <---------AHL20(2)    <---------AHL20(2)            <----------DOF2    --------->AHL20(2)         ---------->ID1                       --------->ANAC58 -GAMYB                     --------------->AtSPL8             ------->TEIL --MYB46(3)              <---------AHL20(2)              --------->ICU4 ->MYB55(2)            <---------RVE1(1)              <---------YAB1--------->ANAC46 --DEAR3(1)            <---------CCA1(1)             <---------AHL20(2) -ANAC58              --------->ARR11(3)             --------->AHL20(2)  --------->MYB46(3)        -- -ANAC58              <---------ARR11(3)          --------->TOE2(3) --------->ANAC58   --------->STY1(2) -ANAC46              <---------GLK1(2)        ----------->RAV1(1) <-------TEIL        <---------STY1(2) -RAP2.6(2)         ----------->ARR10       --------->ANAC46<---------YAB1<---------ALFIN1         --   gcaaaattatatgggaaggggaaagatttttttgttctttttttttcagccacattaaaattatgaacatacacaaccacttgagtactagctaattcca  5352600                                                                                        --------->DAG2                                                      <---------ANAC58              --------------->AGL15                                                      <---------ANAC58              <---------------AGL15                                                      <---------ANAC46             ----------------->AGL2                                                <---------AHL20(2)                 <-----------------AGL3                                          --------->YAB1                           <-----------------AGL2 ------->MYB46(3)              <---------YAB1  --------->AHL20(2)              ------->TEIL  -------- ---------->CBF              *TSS         --------->TOE2(3)          <---------KAN4(2) ---------->DOF2   aaccaatgttcaaaaaaaacccaaaaaaaaaccattatagacaaacttaataaatagcgttggagagagagaataaacatgaacatctaaaaagggaaag  5352700                           ---------->CDC5                        --------->At4g35610                        <---------At4g35610                       --------->DEAR3(1)                      --------->ATERF1(1)                      <------NtERF2                      --------->RAP2.3(1)                     <---------ATERF1(1)                    <---------ARR14(2)                                                   <---------ANAC58                    --------->ARR14(2)                                                   <---------ANAC58                   <------ZmHOX2a(1)                 ------->GAMYB                  --------->ATHB12                   --------->ATERF1(1)              --------->MYB46(3)             <---------YAB1                 --------->ALFIN1       <---------ANAC46 ----------->HVH21    --------->YAB1                <------ZmHOX2a(1)     <---------ANAC46   --------->LBD16     --------->ICU4 <-------TEIL              --------->ALFIN1        <---------ANAC58  --------->DEAR3(1) <---------bZIP60(1) -->DOF2     <------ZmHOX2a(1)        <---------ANAC58 <---------LBD16     --------->bZIP60(1)   gagaatgaagaatgaggaggaggagccgctcagcccgatggctcgtgtattccaatcgccggacatagacttatgtgccatcatcaacattgggttcaaa  5352800                                                                         --------------->AtSPL8                                                                     <---------ZAT14                                                                     --------->ZAT14                <                                                           <---------CCA1(2) <---------ZAT18  -------                                                        ------>ZmHOX2a(1)<---------------AtSPL8  <---            ------>NtERF2                        --------->ANAC58  <---------At4g35610      <--------     <---------AHL20(2)                          --------->ANAC46 --------->ANAC58    --------->AHL20(2)    --------->AHL20(2)       <----------DOF2     --------->ANAC58 --------->ANAC58  ------>ZmHOX2a(1)   acaaaaattaatcccgacgttgttcttgatgctttgaagcaaaatgtttacaagcatcctcgtttctccagcaaactggtaccctcctataaatatacca  5352900                                                    <---------TGA2(1)    <----------DOF2                                 <---------bZIP60(1)    <---------------AGL15                           --------->bZIP60(1) ---------GLK1(2)                                   --------->TGA2(1) -->ANAC46                                       ----------->HVH21 <---------ANAC55(2) ------ALFIN1     <-----------GT1          --------->YAB1        --------->AHL20(2) ---GT1    ----------->GT1                <-------TEIL     --------->YAB1                 -----------   cacattctttacatagttattttccatcacttatatgtgatgcattcatacatgacatcatttagaattacatatatatgtttatgtacagatggataaa  5353000                                                                          <---------ANAC58                                                                          <---------ANAC46                                                                          <---------ANAC58                                                                         <---------DEAR3(1)                                                                        --------->ATERF1(1)                                                                        <------NtERF2                                                                       ------>NtERF2                                                                       <---------RAP2.3(1)                                                                       <---------SPL7                                                                       <---------ATERF1(1)                                                                      <---------DEAR3(1)                                                                      <---------RAP2.3(2)                                                                      --------->ATERF1(2)                                                                      <---------RAP2.6(2)                                                                     <------NtERF2                                                                     --------->ATERF1(1)                                                                     --------->At4g35610                                                                     <---------At4g35610                                                                    <---------RAP2.3(1)                                                                    <---------ATERF1(1)                                                                    <---------DEAR3(2)                                                                    <---------RRTF1(1)                                                                    <---------ERF1                                                                   <---------RRTF1(2)                                                                   <---------RAP2.6(2)                                                                   <---------DREB2C(2)                                                       --------->ZAT14<---------ATERF1(2)                                                   ------>ZmHOX2a(2)<---------ORA47(2)                                                  --------->GLK1(1)<---------DEAR3(1)                                             ----------->RAV1(2)   <---------RAP2.3(2)                                             ===============================RAV                                             --------->ANAC55(2)   --------->ETT(1)                                           <-----------GT1         <---------RAP2.3(3)                                       --------->AHL20(2)          <---------At1g77200                                       <---------AHL20(2)          <---------DEAR4(1)                   <---------AHL20(2) <---------AHL20(1)          <---------ORA47(1)                   --------->AHL20(2) <---------AHL20(2)         <-----------HVH21                   --------->YAB1     --------->AHL20(2)        <-----------RAV1(1)               --------->AHL20(2) <---------YAB1 <---------ARR11(3)<---------RRTF1(3)  <---------ARR11(3)   <---------AHL20(2)             <---------AHL20(2)   <---------ZAT14--------->DEAR3(1)--------->CCA1(2) >GT1     <---------AHL20(2)      --------->AHL20(2)   <---------REM1(2)------>NtERF2  --------->ARR11(3)   ttgatttttttttaaaatgaattatatgtttgatatataattaatttacctgatctctacacagttttgtcggcggccgtgtttttgtagatatatgtat  5353100  Previous    Next  AGI:  At5g16350.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G12420.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48523.1); contains InterPro domain Protein of unknown function UPF0089 (InterPro:IPR004255); contains InterPro domain Protein of unknown function DUF1298 (InterPro:IPR009721) Range:  from: 5352629    to: 5355073    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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