Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <                                                                                                   <-                                                                           --------->DAG2          -- ------>ARR14(2)                                                 <---------AHL20(2)            <----- -------ARR14(2)                                  >>>>>>>>>>>>>>>>>LFY    ---------->DOF2     <------ ----------AGL15                          <----------ID1         --------->AHL20(2)    <----------DOF2   tatatggcacaatggctatcgagagacactaatccacttagtataagacaaacaccattgttgatatataatttcaaaaagcatcaatacttttattttc  5343900   ------>ZmHOX2a(1)                                                                            ----- ---------ATHB12                                                                               <----- --------ARR14(2)                                             <---------ANAC58                 <----- ------->ARR14(2) <-----------GT1                       <---------MYB46(3)                     ------ ------GT1    --------->ICU4                            <-----------RAV1(1)           --------->TOE2(3) -----GT1 --------->At5g28300   <-------TEIL   <-----------GT1<---------ANAC58       --------->YAB1   caatcctcacacagtaagtatcacctcttgtagatgcagagaagactattttcaacatttgttggcttctaatttgacaaaatccaaacataaatcagat  5344000      --------->ANAC58                                                    --------->AHL20(2)      --------->ANAC58                                                  <----------DOF2      <-------    <------ZmHOX2a(1)                                               <---------CCA1(2)        -------- ---->GLK1(2)                           <---------ALFIN1       <---------TGA2(1)            <------ZmHOX2a(1) ----ARR14(2)                       --------->ZAT18            <---------bZIP60(1) --------->LBD16 ----GLK1(2)             <---------ATHB12     --------->YAB1   --------->bZIP60(1)--------->HSFB2a(2) --->ARR14(2)      <-----------GT1  <---------ZAT18            --------->TGA2(1)  <---------HSFB2a(2)   tctacaggaagccaagactattttccaaacatttttagtgctccactatcaaaacctcgttactgacatcatctctttatatatccagaaaacaggaacc  5344100                                --------->GLK1(2)                               <---------ARR14(2)                               <---------GLK1(2)                             ----------->ARR10                            --------->LBD16                           ====================HOX2a_HOX2a                ----------->GT1                           <------ZmHOX2a(2)   --------->ANAC58          <---------DEAR3(1)                --------->ARR11(3)             --------->ANAC58         <------NtERF2       ---------->DOF2   <------ZmHOX2a(1)--------->ANAC58             ------>NtERF2   ----------->GT1    <---------LBD16     --------->ANAC58            --------->ANAC46 --ARR14(2)     <---------ARR11(3)      <------ZmHOX2a(1)    --------->YAB1 ->ARR14(2)   --------->GLK1(2)--------->ARR14(2)        <---------WRKY12--------->DEAR3(1)   ccaaattgttaaagagaatatataccaggatcagattctacaggaagccaagacatggttcaacgatgactcgcgccggtgaaaatgggtctgaatttag  5344200                                                                      --------->ANAC58                                                               --------->At4g35610                                                            --------->At4g35610                                                            <---------ZAT2                                                            <---------At4g35610                                                            --------->ZAT2            <---------GLK1(2)                          --------->ANAC58                       -------            <---------ARR14(2)                         --------->ANAC58                       <------            --------->ARR14(2)      --------------------->WRI1 <---------At4g35610          <--------   <-----------GT1              ------>ZmHOX2a(1)      --------->ANAC46 ---------->DOF2     <-------- <-----------GT1     <---------CCA1(2)              <---------REM1(2) --------->ANAC58  *TSS<--------   aattttcactctcaaattcgcgcttatctatctcctcccatcgatttcatcgtcttcacgctagctgcagactcgaaagagagactatagactggtgtgg  5344300                                                                                          <---------ATHB12                                                                                        ------>MYB83                                                                          --------------->AGL15                                                                          --------->HSFB2a(2) -->ALFIN1                                                                <---------------AGL15 ---AtMYB61                                  <------------CBF             <---------HSFB2a(2)-------- -ANAC58                                 --------->ANAC58         ------------>CBF      ------>MYB46(1) -ANAC46                                 --------->ANAC58  --------->ANAC46 ----------->TBP  <------- -ANAC58---------->ID1            --------->REM1(2)    --------->AtLEC2  <-----------------AGL3   tctcgattttgtcttaatagaggtcgctctaaaccgagtagaaacgaaattgaattcatccaaaccatttcaatttctataaatcgaaccaaatcaagtg  5344400                                                 --------->DOF5.7(2)                                              --------->MYB46(3)                                            ------>MYB83                                            ------>MYB46(1)                                            --------->MYB52(1)                                          <---------MYB59                                         --------->DEAR3(2)                    <----------ID1                                       --------->MYB52(1)                 <------NtERF2            <-                                       ------>MYB46(1)                   --------->LBD16   --------->TOE2(3)                                     <---------MYB59                    --------->ETT(1) <---------ARR11(3)          <---------ARR14(2)        --------->DEAR3(2)             <---------ANAC58      --------->ARR11(3)       --------->MYB59         --------->HSFB2a(2)                 <---------ANAC58---------->DOF2<-- --->GT1  --------->ARR14(2)   <---------HSFB2a(2)  <---------TOE2(3)   <---------ANAC46--------->GLK1(1) --ANAC55(2)           <-----------GT1 ------>MYB83<---------DOF5.7(2) <---------LBD16  <---------GLK1(1)   aaaaacaattcggttctggttttattaaacttactcgaaccgaaccgaaccgataacgttcttatatatccttgccggagagagccaaagaaatcttaga  5344500             <---------ANAC46            <------NtERF2           <---------RAP2.3(1)           ------>NtERF2          <---------DEAR3(1)          <---------RAP2.3(3)                                                         <------ZmHOX2a(2)          <---------ANAC46            ---------->DOF2                                --------->ARR14(3)        --------->MYB52(1)       --------->LBD16                                     <---------ARR11(3)       ----------->TGA1         --------->DEAR3(1)                                   <---------ARR14(2)       ----------->HVH21       <------NtERF2                                         --------->ARR14(2)     *TSS--------->RAP2.6(3)  --------->ABI4(1)                         ---------->DOF2------>ZmHOX2a(2)   ------------>CBF           ------>NtERF2                    --------->DAG2        <---------ARR14(3) -----ZmHOX2a(2)             <---------ALFIN1 <---------WOX13(1)    ---------->DOF2  --------->ARR11(3) -------ARR11(3)             --------->DEAR3(1)               ---------->DOF2<----------DOF2    -----   gatcaaacaatgacggcgagtgagactatcgccaccgcgataaatcagattgatgagaagaaggaaaagctaaagaaagctttcgacgatcttcaagctc  5344600                                                                                             ------>NtERF2                                                                                             <-------                                                                                            ---------                                                                                            <--------                                                                                          <---------ATERF1(1)                                                                                          --------->LBD16                                                                                          ------>NtERF2                                                                              <---------ANAC58                                             <---------GLK1(2)                <---------ANAC58      -                                --------->LBD16                        ------>ZmHOX2a(1)<---------LBD16                                ------>ZmHOX2a(1)    <---------DAG2<---------ARR14(2) --------->ARR14(2)                   <----------DOF2        ====================================HOX2a_HOX2a--------->ANAC46               --------->DEAR3(1)         <------ZmHOX2a(2)------>ZmHOX2a(1) --------->STY1(2)    <--             <---------At5g28300=================HOX2a_HOX2a       --------->ARR14(2) <---------ARR14(2)         <----------DOF2      ----------->RAV1(2)    <----------DOF2<---------ATHB12 <---------MYB52(1) ----->CDC5 <-----------GT1<----------DOF2========================HOX2a_HOX2a<---------STY1(2)  -----   atcgctctctcctttcaccgtctttctcactttcctggtctgagatcgattctcacttttcctctctccaatcctcccttgctagccgtttccgcctcct  5344700     --------->REM1(1)                                  <---------GLK1(1) --ATERF1(1)                                            --------->GLK1(1) >DEAR3(1)                                   <-----------RAV1(1) -ALFIN1    <----------DOF2             --------->HSFB2a(1)                                  <------- -------->ANAC46          <---------ANAC46 <---------At4g35610                --------->MYB52(1) -------ALFIN1        --------->ATHB12  <---------HSFC1(2)               <------ZmHOX2a(1)  <-------- ->ZmHOX2a(1)        <---------YAB1     --------->HSFC1(2)         <---------LBD16     -------->P   <   ccactctacatctcctttggaacatgattcgtatagaatcgacgcttctgatgcagggaaatcgtcgtcttcggaggaggtatcggagcaacccgttgtt  5344800  Previous    Next  AGI:  At5g16310.1    Description:  UCH1; ubiquitin thiolesterase. similar to UCH2, ubiquitin thiolesterase [Arabidopsis thaliana] (TAIR:AT1G65650.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN60599.1); contains InterPro domain Ubiquitinyl hydrolase, UCH37 type (InterPro:IPR017390); contains InterPro domain Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1; (InterPro:IPR001578) Range:  from: 5342394    to: 5344288    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g16320.1    Description:  FRL1 (FRIGIDA LIKE 1). similar to FRL2 (FRIGIDA LIKE 2) [Arabidopsis thaliana] (TAIR:AT1G31814.1); similar to ABI3-interacting protein 2 [Callitropsis nootkatensis] (GB:AAP31312.2); contains InterPro domain Frigida-like (InterPro:IPR012474) Range:  from: 5344505    to: 5346022    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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