Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                 <---------YAB1                                              <---------ARR11(3)                                              --------->ARR11(3)                                             --------->YAB1                                          <---------ICU4                                          --------->YAB1                                         <---------AHL20(2)                                         --------->AHL20(2)                                         --------->ICU4     --------->AHL20(2)                                      --------->AHL20(2)  <---------MYB52(1)               <------ZmHOX2a(1)     <---------AHL20(2)  <-------GAMYB      <---------YAB1                 --------->AHL20(2) ----------->GT1                    --------->ZAT14 <---------MYB46(3)    <---------AHL20(2)<---------ATHB51--------->LBD16                   <---------ZAT14 ----DOF2   <------ZmHOX2a(1)      --------->YAB1       <---------ANAC46        <---------ATHB12   gagttgttgttataggaggagctattttatgaactaaaaataaataattatctttgttccgttaaattagttttgcatactaatcaaatgtagaacactg  5337700                             <---------ANAC46                             <---------ANAC55(2)        ------>ZmHOX2a(2)                             <---------ANAC55(1)        --------->YAB1                             <---------ANAC58         --------->ARR11(3)                            <                             <---------ANAC58         <---------ARR11(3)                           <-                             --------->O2          <---------ATHB12                                --           --------->ANAC55(2)               --------->ANAC46                       --------->SPL7 <-           <---------ANAC55(2)            --------->ARR14(2)                      ----------->HVH21--        ---------->ID1       <---------O2 <---------ARR14(2)                 ----------->HVH21    <--       <-----------HVH21---------->DOF2  <----------TaMYB80           ---------->DOF2            ----   ttactagtttgtcacttatttagtatcaaagacgtgtattagtatatactccaatcgatcttaacttaacaattaagctctaaccggaccggacttggtt  5337800                                                             <---------MYB59                                                            <-----------------AGL1                                                            ----------------->AGL3               <--- ------>ZmHOX2a(2)                                          ----------------->AGL1            ------- ------ZmHOX2a(2)            --------->SPL7             <---------ANAC58                  --------->ARR14(2) --------ARR11(3)          ----------->HVH21            <---------ANAC58                  <---------ARR14(2) ------->ARR11(3)        <---------LBD16            <---------ANAC58                     <------ZmHOX2a(1) --------AGP1          <-----------GT1              <---------ANAC58                   <---------TOE2(3) ------->AGP1       <----------DOF2              ------>ZmHOX2a(1)                 <------------CBF -------CCA1(2)  <---------TOE2(3)           --------->ARR14(2)------>MYB83  ----------->GT1 -------- ------->ARR10   <---------TOE1(3)           --------->GLK1(2) ------>MYB46(1)    --------->ICU4 ----   agatcttaacttaacaattaagctttaaccggaccggacttggttagaatccttccttgcgaaccaaattagggcaaacttgtaatattgaggaaacgtt  5337900                                                                                                    -                                                                                                   --                                                                            <------ZmHOX2a(1)    ====                                                                 ------>ZmHOX2a(2)               ====                                                                 ==================HOX2a_HOX2a   ====       <---------ANAC46                                         <------ZmHOX2a(2)                <---       <---------ANAC58                                         ===================HOX2a_HOX2a   ====       <---------ANAC58                                        --------->AGP1<---------ARR14(2)  ====   <----------DOF2         <------------CBF                    --------->ARR11(3)         --------->ARR14(2) ------AHL20(2)         ------------>CBF                       <---------AGP1--------->ARR14(2)<----- -->TOE2(3)         --------->ANAC46                           <---------ARR11(3)         <---------ARR14(2) --->GT1   <---------CCA1(2)                                  <---------CCA1(2)           ------->TEIL ----->AHL20(2) <<<<<<<<<TBF1                                ----------->ARR10            --------->GLK1(2)   taattcttttcgtgtttcttcttcgcagcaattgcagaaacttaaaaaaaaaaactcaaaaattagatcttaattcgaggattctacttctgaatctgag  5338000                        ------>ZmHOX2a(2)                       <------ZmHOX2a(2)                      --------->AGP1                      --------->ARR14(2)                      --------->ARR11(3)                      <---------AGP1                      <---------ARR14(2)                      <---------ARR11(3)             <------ZmHOX2a(2)             --------->CCA1(2)             --------->ARR14(1)            <---------ARR11(3)            <---------ARR14(2)            --------->ARR14(2)                                                                      - --------->ANAC58    <---------CCA1(2)                                                              - --------->ANAC58   ----------->ARR10                                                               - -------->DAG2    <------ZmHOX2a(2)                                                              ---- -------->DOF2   <-----------HVH21                                       ----------->GT1         ---- ====================HOX2a_HOX2a                                        <---------WOX13(1)       ---- ========================HOX2a_HOX2a                                   <------------CBF       ------- ===================HOX2a_HOX2a                                   --------->YAB1             -------- ---ZmHOX2a(1)------>ZmHOX2a(2)    <---------GLK1(2)             <---------YAB1              -------- ==============================HOX2a_HOX2a             --------->At4g35610    ---------->DOF2-------- =============================HOX2a_HOX2a          <-----------HVH21<---------WOX13(1) <------------- ----TOE2(3)--------->AGP1 <---------MYB52(1)<<<<<<<<<TBF1       --------->ICU4        ------------>CBF   gaaaagctatcccagatccgatcagatctgttttgttgattctcttcttcttcagtcagtggaagctatgatggattgctaaaagagaatacaatacgca  5338100                                                                                          <---------WRKY45                                                                                          <---------WRKY38(1)                                                                                          <---------WRKY12                                           <------NtERF2                                 --------->WRKY18(1)     --------->ANAC58                     <---------LBD16                              <---------MYB46(3)     --------->ANAC58                     ------>NtERF2                               <---------AtMYB61 -------->ANAC46                          --------->LBD16                             --------->ALFIN1 -------->ANAC58                         <---------ANAC46                           <---------ZAT2 -------->ANAC58                         --------->DEAR3(1)      --------->SPL7    <---------AtMYB61 ----->ANAC58                           --------->ATERF1(1)     <---------MYB52(1) <---------DEAR3(1) ----->ANAC46                           <---------LBD16        <---------SPL7    ------->GAMYB ----->ANAC58                          ------>NtERF2           --------->At5g28300 --------->ALFIN1 -->TOE1(2)                      --------->At4g35610        ------>NtERF2      >>>>>>>>>MYB98 ->ANAC58                        <---------At4g35610        --------->LBD16   --------->MYB52(1) ->ANAC46                        --------->ZAT2   --------->RAP2.6(3)        ----------->HVH21 ->ANAC58                     <---------At4g35610--------->MYB52(1)      <---------At4g35610       -- --------WRI1       --------->YAB1     --------->LBD16  <---------SPL7   --------->At4g35610      ---   cgaagccacgcttgagaaaccatgagaatgtcatcagcttccgccggggaataccggccttccgccgtaagtctcagcagtaacggaggtggtcaacgag  5338200                                     <-------TEIL                                    --------->CCA1(2)                                    --------->GLK1(2)                                   --------->ARR11(1)                                   <---------ARR14(2)                                   --------->ARR14(2)                                <------NtERF2                <------ZmHOX2a(1)          --------->HSFC1(2)                              --------->ETT(1)         ------>NtERF2                    --------->ZAT2                              <---------ANAC46        --------->DEAR3(1)                <---------HSFB2a(1)                            <-----------HVH21       <---------RAP2.3(1)                 --------->HSFB2a(1)                       --------->MYB46(3)           <---------ORA47(2)                  --------->At4g35610                  --------->ANAC46<---------GLK1(1) <---------ATERF1(1)                 <---------HSFC1(2)                  --------->ANAC58<---------HSFB2a(1)<------NtERF2                     <-----------ARR10         <----------DOF2   <-----------RAV1(1)    --------->ATERF1(1)                 <------ZmHOX2a(1) ------->At4g35610--------->ANAC58--------->GLK1(1)<---------DEAR3(1)           ---------->DOF2 ------>GLK1(2)  <---------TOE1(2)--------->HSFB2a(1)--------->ATERF1(1)  <------ZmHOX2a(1)  --------   atgctgagtctctttttcgcacgaaaccaatgtcggagattcgaattgtggagtcggcgactaggaagaacatcgaggataagaaagaggagcttcggca  5338300                                                                                                    -                                  --------->At4g35610                                              --                                  <---------ZAT2                                                   --                                  --------->ZAT2                                                   --                      ------>ZmHOX2a(2)                                                           <--                    <---------ARR11(3)       <---------MYB46(3)                                  <---                  <---------MYB52(1)----------->HVH21                                          <-----                <---------ANAC46  <---------At4g35610                                <---------ARR11(3)                <---------ANAC58  ----------->RAV1(2)                                --------->ARR11(3)                <---------ANAC58<-----------RAV1(2)                        ------>ZmHOX2a(2)  ------- ->HSFB2a(2)  <---------At5g28300XXXXXXXXXXXXXXXXXXX>MIR3434     <-----------HVH21  <---------CCA1(2)   actcgttgggactaggtaccgtgatctaatcgactcagctgactcgattgttcacatgaagtcgctctgtgagtcgatctcagccaatatctcttcgatc  5338400                                                   <---------STY1(2)                                               --------->ZAT2                                            ------>ZmHOX2a(1)                                       --------->HSFB2a(1)      --------->TOE1(2)                --------->HSFC1(2) --------->At5g28300                   <---------HSFB2a(1)                                        <-- ---------->GT1                        <---------HSFC1(2)                                       <---- ------->ANAC58                      --------->ARR14(2)  --------->TOE2(3)                      <---- ------->ANAC58                  <---------LBD16<---------ANAC58                                <---- ------->ANAC46              <-----------RAV1(1)<---------ANAC58                               ------ -------LBD16           <<<<<<<<<TBF1<---------ARR14(2)  --------->TOE1(3)                  <-------- ------ALFIN1        <<<<<<<<<TBF1<---------ANAC46 --------->STY1(2)                       <---------ANAC58 -ZmHOX2a(2)    <----------DOF2  <---------At4g35610<---------ANAC58                       <---------ANAC58 -->ARR14(2) ------>ZmHOX2a(2)   --------->At4g35610<---------ANAC58                     ------>ZmHOX2a(2)   cacggtaacattcgatcgctttcttcttcttctgtagcggaaactcctaagcttgctagccttaacccagtacgagtcaatgtctatgggatcgcttgtc  5338500                    ----------->RAV1(2)                  --------->ANAC58                                                                  -                  --------->ANAC58                                         <------MYB83          ----                --------->CCA1(2)                                          <------MYB46(1)      -----               <---------ARR14(2)                                         <---------AtMYB61    ------      --------->ARR11(3)                                                 <--------P            ------      --------->ARR14(2)                                              --------->LBD16          <-----      <---------ARR14(2)                                             <---------ANAC46          <-----      --------->GLK1(2)       --------->CCA1(2)                     <------NtERF2  <---------ANAC58 <   <---------ANAC55(2)       --------->ARR11(3)                     --------->ATERF1(1)        ------   --------->ANAC55(2)     --------->GLK1(2)                        --------->At4g35610        ------ -------ZAT6   --------->ARR11(1)          ----------->HVH21        <---------At4g35610        ------ -----ANAC58   --------->ARR14(2)        <---------ANAC58           <---------LBD16<---------ANAC46 - -----ANAC58 <---------MYB46(3)  <---------LBD16                  <---------DEAR3(1)  <---------ZAT2< -----ANAC46<---------ANAC46 --------->ARR14(2)             <---------HSFB2a(2)    <---------ANAC58-- ---->ID1<-----------RAV1(1) <---------ARR14(2)             <---------HSFC1(1)<-------TEIL     <----- --DOF2  =======================RAV      <---------ANAC58   --------->HSFB2a(2)   <-------TEIL <-----   gtgttaagtatctggtggatacgcctgagaatatatggggatgccttgacgagtctatgtttctagaggctgcggggaggtacatgcgtgctcagcatgt  5338600  Previous    Next  AGI:  At5g16290.1    Description:  acetolactate synthase small subunit, putative. similar to acetolactate synthase small subunit, putative [Arabidopsis thaliana] (TAIR:AT2G31810.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23877.1); contains InterPro domain Amino acid-binding ACT; (InterPro:IPR002912); contains InterPro domain Acetolactate synthase, small subunit; (InterPro:IPR004789) Range:  from: 5333767    to: 5337747    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g16300.1    Description:  similar to hypothetical protein OsI_003871 [Oryza sativa (indica cultivar-group)] (GB:EAY76024.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ68647.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15608.1) Range:  from: 5338122    to: 5342435    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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