Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     --                                                                                                  ---                                                                                                  <--                                                                                                <----                   --------->ARR11(3)                                                    <---------DAG2      <---------------AGL15                                                              ------------      --------------->AGL15                                                              <-----------     <-----------------AGL3    <---------CCA1(2)                    <----------DOF2      <----------DOF2     ================================================================================================  ------>ZmHOX2a(1)<---------ARR11(3)               <---------AHL20(2)                <-----------GT1   tctcctaactaaacatagaaacatcttcaaaccctatctctgaataagtcttatttaagtgaatacacatctttttggtatgttttgtttacttttttga  5333400                                                                                                 ---- ------->GLK1(2)                                  <---------AHL20(2)               <------ZmHOX2a(1) ------>ARR11(3)                                <---------YAB1                  <-----------RAV1(2)-- -------ARR11(3)                             <---------YAB1                 ----------->HVH21   <---- -----TOE2(3)                            <----------DOF2                    <---------SPL7  --------- --->AGL15                               <---------DAG2                  <-----------HVH21--------->YAB1 ----AGL15 <-----------GT1            <-----------GT1              ----------->HVH21    ------->TEIL ====MADS_MADS    <---------ICU4   <---------ICU4 --------->AHL20(2)     <---------MYB52(1) <--------   gattttgagttattttctaaacatttctacatttgaaatattactttattattaaaacatagaaaacgtctaaccggtcggaccaggatgaaccatgatt  5333500                                                                                     --------->AHL20(2)                                                                                 <---------AHL20(2)                                                                                 --------->AHL20(1)                                                                                 <---------AHL20(1) ----->YAB1                ---------->DOF2         --------->ANAC46             --------->AHL20(2) --------->HVH21      <---------YAB1              ------------------------>ANAC81--------->AHL20(2) ---TEIL         --------->LBD16               <---------HSFB2a(2)              <---------AHL20(2) >ICU4         <---------LBD16                 --------->HSFB2a(2)        ----------->GT1 -YAB1      <---------ALFIN1        ---------->DOF2<----------ID1  ---------->DOF2   <---------AHL20(2)   catgacccgaactcacacccggttttgataaaagttttaaaagagactactagacgacaaaaacaaaaacaaagactagtaaataaattaaaaaatgacc  5333600                                 -------->ATHB1                                 <---------ICU4                       <---------MYB52(1)   <---------AHL20(2)                      --------->LBD16       --------->AHL20(2)               ---------->DOF2   --------->ATHB12          <---------DEAR3(2)    <---------ATHB12          ----------->GT1    <---------AHL20(2) --------->AHL20(2)       <---------ZAT2 ----------->GT1   --------->AHL20(2)      --------->DEAR3(1)    --------->AHL20(2)  <---------AHL20(2)                    ----------->GT1   --------->ANAC46 <---------LBD16  --------->ATHB12   ---------->DOF2        ---------->DOF2      -   cgaacacacagccggttcaaagtccggttattaaatcattgattaaaaaattaaaaaacaaagactactagatgacaaaaacaaagaccagtaaaaaacg  5333700                  ----------->GT1                     --------->AtMYB61   ------->GAMYB                 --------->DAG2                    --------->ANAC46     --------->ANAC58                --------->ZAT14                  <---------ALFIN1       ------>MYB83                ---------->DOF2               --------->ANAC46          -------->P                <---------ZAT14             --------->ANAC46            --------->ANAC58             <---------------AGL15          --------->ANAC55(2)    --------->At4g35610             --------------->AGL15          --------->ANAC58       ------>NtERF2      <---------YAB1----------->GT1         <---------ANAC55(2)   --------->RAP2.3(3)         <------     <---------AHL20(1)                     --------->ANAC55(1)  --------->ATERF1(1)        ---------     --------->AHL20(1)                     --------->ANAC58  <---------LBD16      --------->DAG2     --------->ARR11(3)                 <----------DOF2  <---------ALFIN1--------->MYB46(3)<---------YAB1     <---------ARR11(3)         --------->AHL20(2) <---------ALFIN1*TSS ------>MYB46(1)    --------->ICU4    <---------AHL20(2)        --------->TOE2(3)----------->RAV1(1)--------->DEAR3(1)   --------->ZAT18 -------->AHL20(2)<---------ANAC46<------------CBF------->GAMYB--------->ANAC46  ---------->DOF2   ttttaaatatttttgctgtaaagtgtaaactacataaattgtctttacgcaacacacctccactcgcgcagcccaaccaaaaaaaaaggtgccctgattg  5333800                                                                                   --------->DEAR3(1)                                                                                  --------->ATERF1(1)                                                                                  <------NtERF2                                                                                 ------>NtERF2                                                                                 <---------ATERF1(1)                                                                                <---------DEAR3(1)                                                                                ----------->HVH21                                                                                --------->DEAR3(1)                                                                               --------->RAP2.3(1)                                                                               <------NtERF2                                                                               --------->ATERF1(1)                                                                              <---------ORA47(2)                                                                              <---------ERF1                                                                              <---------RAP2.3(1)                                                                              <---------ATERF1(1)                                                                              <---------DEAR4(2)                                                                              ------>NtERF2                                                                              <---------RRTF1(1)                                                      --------->ANAC58       <---------DREB2C(2)                                                      --------->ANAC58       <---------RAP2.3(3)                                                      --------->ANAC46       <---------RRTF1(3)                                                    <---------ALFIN1         <---------RRTF1(2)                                                  <-----------HVH21          <---------RAP2.6(2)                                                 --------->ANAC46            <---------ANAC46                                                ------>NtERF2                <---------RAP2.3(2)                                                --------->LBD16              <---------ATERF1(2)                                               --------->ANAC46              <---------DEAR3(1)      --------->MYB46(3)                      <---------LBD16                --------->ATERF1(2)     --------->ANAC58                 --------->At4g35610              --------->ARR14(2)     --------->ANAC46                 <---------At4g35610              <---------ARR14(2)     --------->ANAC58             ------>ZmHOX2a(1)----------->HVH21 --------->LBD16------>NtERF2   < ---WOX13(1)        <----------DOF2  <-----------RAV1(1)            --------->HSFB2a(2)    <---------At4g35610 >ATHB12---------->DOF2    <------------------------ANAC81          <---------HSFB2a(2)------>NtERF2-   tttactcacccaaagtttctctctttctctcttctccttctgctgttttccgcctcacaccattactctcccagaaatggcggcgacgacgactgctact  5333900                                                                                        =============                                      <---------TOE2(3)                                 =============                                      <---------TOE1(3)        --------->ANAC46--------->AHL20(2)                                  --------->GLK1(2)  ------>NtERF2           --------->ANAC58                              --------->YAB1         --------->LBD16         --------->ANAC58                            --------->GLK1(2)       <---------LBD16          ----------->GT1                         --------->LBD16           <---------LBD16       --------->AtLEC2     <------                        <---------HSFB2a(2)      --------->ARR14(2)  ------->GAMYB      <------ZmHOX2a(2) <---------ICU4         --------->HSFC1(1)       <---------ARR14(2)--------->ZAT2      <---------ARR11(3) ---------YAB1          --------->HSFB2a(2)     <---------GLK1(1) <---------ALFIN1     --------->ARR11(3) -------->ICU4         ----------------->AGL2   --------->GLK1(1)<---------ALFIN1--------->WOX13(1)   tcattattctcatctcgtcttcacttccagaatcagaatcaaggttatgggtttccggcgaaaacccccaactccctgcaagtaaatcagatcatcgacg  5334000                                                                                     ----------->HVH21                                                                                     <---------YAB1                                                                                 <---------ANAC58                                                                                 <---------ANAC46                                --------->At4g35610                              <---------ANAC58<---                             <---------ZAT2   --------->ANAC58                 ------>NtERF2     ----                             ----------->RAV1(2)                            <---------ATERF1(1)<-----    --------->At4g35610      --------->At4g35610           --------->ZAT14  ------>NtERF2     <------    <---------At4g35610      <---------At4g35610       <---------ALFIN1<---------At4g35610<------MYB46(1) <------ZmHOX2a(1)  --------->ZAT14          --------->DAG2--------->At4g35610<---------DEAR3(1) ---- =======HOX2a_HOX2a <---------ZAT14      --------->YAB1--------->AtMYB61   ----------->HVH21  <------ ================HOX2a_HOX2a --------->ZAT2 ---------->DOF2<---------ZAT14 --------->DEAR3(1)<-------TEIL ---LBD16 <------ZmHOX2a(1)<-----------RAV1(2)--------->ANAC58         --------->At4g35610<------MYB83   ggaggaagatgaggaatgccactgttctctcagctgcttccactgataaagccatcaccactgctcaatctgtagctccgacggcttgtgataggtgcgt  5334100                                             <---------ANAC46 ------ARR14(2)                              <---------ANAC58 ----->ARR14(2)                              <---------ANAC58 -----DOF2             <----------DOF2    --------->ALFIN1 ---ANAC58        ---------->DOF2       <-----------RAV1(1) ----->GLK1(2)  --------->ANAC58     <<<<<<<<<WRKY18        >>>>>>>>>TBF1     ------>ZmHOX2a(1) ---ANAC58      --------->ANAC58   --------->TOE2(3) ---------->DOF2<----------DOF2               <<<   ttctgttacaagtgaaaaacgaaagctttgctaatttcgtcaatgtggggtgagaaaaagaagaagaacacttttgtttcctctaattcgaactgggttc  5334200                                   --------->AHL20(2)                                   <---------AHL20(1)                     <-----------------AGL1   <---------YAB1               <------NtERF2       <---------AHL20(2)    --------->ATHB12 <<<<<<TBF1 ------>NtERF2          --------->AHL20(1)   <---------YAB1   ttcttctctctctcggcctcgcttccaatttctgcaattaattagcttcttattgtttatgatttgctcaacagtgttttgtttattcagtttctattgg  5334300  Previous    Next  AGI:  At5g16286.1    Description:  unknown protein Range:  from: 5333184    to: 5333324    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g16290.1    Description:  acetolactate synthase small subunit, putative. similar to acetolactate synthase small subunit, putative [Arabidopsis thaliana] (TAIR:AT2G31810.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23877.1); contains InterPro domain Amino acid-binding ACT; (InterPro:IPR002912); contains InterPro domain Acetolactate synthase, small subunit; (InterPro:IPR004789) Range:  from: 5333767    to: 5337747    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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