Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           <---------YAB1       <---------ICU4 --------->GT1                           <---------ANAC55(2) ------->AGL15                       <-----------HVH21 ->TOE2(3)                          --------->AtMYB61           <---------ICU4 --------AGL15                   <---------bZIP60(1)            <--------HAHB4 -------->AG                     --------->bZIP60(1)            --------->ATHB12 -------->AGL1                ----------->HVH21                 --------->YAB1 >ID1  --------->YAB1       <---------ANAC58                   <---------ATHB12 -GT1 <---------ATHB12      <---------ANAC58  ------->TEIL   --------->WOX13(1) <----------DOF2    <-   tttgttaaatcatgatacttagcagtttttgtgtgacaccatcacatgaatttttgtttctatcaatcatttgtttaaaatactttgtattgtagtttgg  5315900                                     --------->ARR11(3)                                 --------->At4g35610--------->GLK1(2)                                 <---------At4g35610<---------ARR11(3)                               <-----------RAV1(2) <---------GLK1(2)                   --------->At4g35610     --------->YAB1                     <---------AHL20(2)                   <---------At4g35610 ------>ZmHOX2a(2)      <-----------GT1--------->AHL20(2)            <----------DOF2  <-----------HVH21--------->MYB52(1)            <---------YAB1          < --------MYB59  <---------At5g28300  <---------ARR11(3)<----------DOF2   <---------YAB1             -   acctaaatttcatacttttacagcagaatgttgtcagatgatctctaataacagaatctttatttttctgtttttcttattaaaaagtttcgattttttt  5316000                                                                                  <--------HAHB4                                                                                  <--------ATHB1                                                                                  --------->ATHB51                                                                                  -------->HAHB4                                        --------->AHL20(1)                        <---------ICU4                              ------>NtERF2                                       --------->YAB1                             --------->DEAR3(1)                                  --------->ICU4                            <------NtERF2                                        <---------YAB1                            --------->ATERF1(1)                                  <---------ATHB51                           <---------ATERF1(1)                                 --------->YAB1           <---------ATHB12------>NtERF2<---------AHL20(1)                  --------->ANAC58       --------->LBD16    --------->RAP2.6(2)                               --------->ANAC55(2)      --------->ANAC46    --------->DEAR3(1)                                --------->ANAC46      --------->ANAC58    --------->RAP2.3(2)                               --------->ANAC58      --------->LBD16    --------->ATERF1(1)                         --------->ARR11(3)      --------->ANAC58   --------->DEAR3(2)                          --------->AHL20(1)     <---------LBD16     --------->ERF1 --------->ARR11(3)           <---------ARR11(3)        ------ <---------GLK1(1)       --------->RAP2.3(1)                       --------->AHL20(1) <---------AHL20(2) --------->GLK1(1)      --------->At4g35610           ----------->GT1<---------AHL20(1)     --------- ---------GLK1(2)       <---------ATERF1(1) ----------->GT1        <---------ARR11(3)<---------AHL20(2) -------->ARR14(2)---------->DOF2 ----------->GT1--------->AHL20(2)<---------AHL20(1)--------->AHL20(2)   cagatttcccgcaatgaggcaaaagaagccgccgagttgaaatattttgaaaaaaatggaaaaacccaaaatattttcaagtaataattaaatgaagtta  5316100                                                                      --------->LBD16                                                                     --------->ANAC58                                                                     --------->ANAC58                                                                  <---------TCP15(1)                                                                  <---------TCP20                                                                  --------->ARR14(2)                                                                  <---------ARR14(2)                                                                  --------->PCF2                                                                 <---------PCF5                                                                 --------->TCP15(1)                                                                 <---------PCF2                                                                 --------->TCP20                                                                ----------->HVH21                                                                <---------SPL7                                                               --------->LBD16                                                          --------->CCA1(2)    <---------MYB52(1)                               ---------->DOF2--------->MYB46(3)  <-----------RAV1(1)                        ------>ZmHOX2a(2)<---------ANAC58                    <-- --->AHL20(2)                              <---------ARR11(3) <---------ANAC58         <---------ATHB12 -->GT1        --------->WRKY12            --------->ARR11(3)<---------LBD16       --------->MYB46(3)   aatactgttggggctagttgacgaaaacaaaaattgttgaaaaatgatctaaatctaaagctatgcgggacccgctaatctcttaaccaatgagagaacg  5316200                                   <---------ARR14(2)                  <<<<<<<<<SARD1                                   --------->ARR14(2)             <------ZmHOX2a(2)       --------->ANAC58           ------>MYB83                    --------->CCA1(2)       --------->ANAC46           ------>MYB46(1)                --------->ARR11(3)       --------->ANAC55(1)      <---------MYB111(1)          ---------->DOF2       --------->ANAC58        --------->ANAC58             ------->GAMYB       <---------ANAC55(2)     --------->ANAC58            --------->MYB46(3)       --------->ANAC55(2)    ----------->RAV1(1)         -------->P   <<<<<<<<<CBP60g      <---------LBD16       <---------SPL7   <---------AHL20(2)  --------->AGP1    ----------->HVH21     --------------->AtSPL3         --------->WOX13(1)      <----------DOF2   <-----------HVH21  <----------DOF2        --------->AHL20(2)  <---------ARR11(3) ------->TEIL  ------->MYC3 ------>NtERF2   --------->AHL20(2)   --------->ARR14(2)                <- -------ANAC46 <-------MYC3--------->RAP2.6(2)   --------->YAB1  <---------ARR14(2)              <---   acgtatgtcacggaacatgtgtttctttgccgcaccaaatccctcatttaatcaaaaatcaaccaaagatccaaatttcgaaactttttagttttttttg  5316300                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                               ------                                                                                              -------                                                                                              <------                                                                                   --------->GLK1(2)                                       <---------MYB46(3)                         --------->ARR11(3)                                     <-------GAMYB ------->TEIL                   <---------GLK1(2)                                    <-----------RAV1(1)                         <---------TOE1(3)                              <---------ANAC58     --------->ARR14(2)           <---------YAB1<------  *TSS      --------->LBD16   <---------ANAC58    <---------GLK1(2)         <----------DOF2   ------- --------CCA1(2)     <---------At5g28300    <---------ANAC46            <---------ANAC46 <----------DOF2 ------AtLEC2       <-----------GT1 <---------MYB46(3)         ---------->DOF2  <---------TOE2(3)   catatcgcaatttccacaaattttactgttttccttggctgttgttgtgtctgaatctccaagaagaaagagttgtgtctttaagattctgcttttaccc  5316400          <----------DOF2   <---------ANAC58   <---------ANAC46   <---------ANAC58                           <------ZmHOX2a(1) ----------->AG                          --------->LBD16 ----------AGL15                     <---------ARR14(2)                                          <--- ----------->AGL1                    --------->ARR14(2)                                   <---------WRKY38(1) --------->AGL15                    --------->GLK1(1)                                    <<<<<<<<<<WRKY38 ---------->AGL2                    <---------GLK1(1)                                    <<<<<<<<<<WRKY26 -----------AGL1                 <---------TOE1(3)                                       <<<<<<<<<<WRKY43 -----------AG                   <---------TOE2(3)             <---------At4g35610     <------MYB46(1) ---------->AG       --------->GLK1(2) <---------LBD16         <---------ZAT2          <------MYB83 -   aaattgggtgttctttttccaagtttctgagaattagggtttccgcgaggactctgttcaaatcgagctgttttggacttgtttgagcttggtcaattct  5316500                                                        --------->ZAT14           -------->P                                   --------->At4g35610           <---------MYB46(3)          <-----------GT1                               <---------ZAT2                <---------DEAR3(2)         ------>ZmHOX2a(2)         --------->HSFB2a(2)  <---------At4g35610    <-----------RAV1(1)    <---------WOX13(1)             <---------HSFB2a(2)  <---------ZAT14      <----------DOF2 ------LBD16   <----------DOF2    -------->P <---------ZAT14           <---------ANAC58 -------->At5g28300               --------->MYB52(1)    --------->ZAT2 <---------ANAC58      <-------   acggtaattgatctaccctttgctctctattctacttaccgaagtagtctagtgtctctgctcagtggcaattgcgagactttgttgtcggtttgagcta  5316600                                                          <---------At4g35610                                                          --------->At4g35610                                                 <---------ARR11(1)                 >>>>>>>>>CBP60g                 ------->TEIL  XXXXXXXXXXXXXXXXXXXX>MIR866-5P                 >>>>>>>>>SARD1                  <---------ARR14(2)       <-------GAMYB                             --------->ARR14(2)      <-----------RAV1(1)       <---------YAB1  <---------CCA1(2)                                ----   --------->GLK1(2)      <---------DAG2        <---------ARR14(1)                               <---  <---------GLK1(2)       <----------DOF2     --------->ANAC55(2)---------->DOF2<---------At4g35610 --At4g35610----------------->AGL1<---------GLK1(2) <----------DOF2             --------->At4g35610   tttcgattctgttgtcgaaatttggaaactttttttgattctctatagacgtatctttggggctgaagaaagggattttgttatctgaatagtttttgaa  5316700                               <------MYB46(1)             --------->At5g28300     <---------DAG2            ----------->GT1    <------MYB83                 <----------DOF2            <---------AHL20(2)           <---------ANAC46    <---------MYB46(3)       <---------TOE1(3)       <------ZmHOX2a(1)          <---------At5g28300  <---------DEAR3(2) <---------AHL20(2)        <---------TOE1(1) ----->At4g35610             <--------P           --------->AHL20(2)        <---------TOE2(1) ------At4g35610   --------->GLK1(2) <----------DOF2    <---------TOE2(3) <------ZmHOX2a(1)    <-----   gctcaattttgttacggtgaaattctaacaagttggttcctttttgttgaatttttttagggttttttggtatagaggacgaggaatgttttattcgcag  5316800  Previous    Next  AGI:  At5g16270.1    Description:  ATRAD21.3/SYN4 (ARABIDOPSIS HOMOLOG OF RAD21 3). similar to SYN3 (SISTER CHROMATID COHESION 1 PROTEIN 3) [Arabidopsis thaliana] (TAIR:AT3G59550.1); similar to cohesin-like protein [Oryza sativa (indica cultivar-group)] (GB:AAP79440.1); contains InterPro domain Rad21/Rec8 like protein, C-terminal; (InterPro:IPR006909); contains InterPro domain Rad21/Rec8 like protein, N-terminal (InterPro:IPR006910) Range:  from: 5316302    to: 5322699    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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