Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                       --------->YAB1                                                              <---------ANAC58                                                              <---------ANAC46                                                              <---------ANAC58                                    <---------REM1(1)    <------ZmHOX2a(2)                                  ==============================HOX2a_HOX2a                                  ===============================HOX2a_HOX2a                            ------>NtERF2               --------->ARR11(3)                            <---------HSFB2a(2)         <---------ARR11(3)                         ------>NtERF2                  --------->ARR14(2)                        --------->DEAR3(1)              <---------ARR14(2)                    <---------At4g35610                 <---------ARR14(3)          <-------TEIL --------->At4g35610              --------->ARR14(3)         --------->CCA1(2)  --------->HSFB2a(2)         <-----------ARR10        --------->ARR14(2) --------->DEAR3(1)           <---------AGP1        <---------ARR14(2)<------NtERF2         ---------->DOF2      ----------->GT1    <------ZmHOX2a(1)  <---------ABI4(2)   ----------->GT1------>ZmHOX2a(2) ------>ALFIN1   ---------->DOF2  <------ZmHOX2a(1)   ----------->ARR10                            >>   gtgtgaggaagatacaacttgaagcagcgccgagaaggatgtagttggagaaaaggaagatcttgtgtgtatggtaatgagactcttctactggtgatga  5310800                                                                     <----------DOF2                                                              <---------ANAC58               --------->YAB1                                 <---------ANAC58                 ------              <---------ATHB12                                <---------ANAC46         >>>>>>>>>TBF1 >>>>>>>TBF1  --------->ICU4                         --------->CCA1(2)              >>>>>>>>>TBF1   agaagaaatgaaacccatgatgagttttgagtttttgaaaattttggattttgagaaatgggtttcgttttctttgatgaacagaagaagaagaagagtg  5310900                                                                                                    -                                                                                                    <     <---------LBD16                                                      --------->DAG2      <------    <---------ANAC46  --------->ZAT18                            <---------HSFB2a(2)         <-------    <---------ANAC58 --------->ANAC58                 *TSS   <------------CBF          ----------->HVH21    <---------ANAC58 --------->ANAC58              --------->ZAT14       ---------->DOF2    <-------GAMYB --->ALFIN1         --------->ZAT18                <---------ZAT14    ----------->GT1<---------ICU4 -   tgtgattcgtggaattgagaagagcgcaacgagtttgtttatgtagaagttagtgaagagagagattgtagaaggtaaagtttctaaatatgaccgttgt  5311000                                                                          --------->YAB1                                                        <--------ATHB1    -------->HAHB4                                                        -------->ATHB1    <---------ICU4                                                        --------->ATHB12  <--------HAHB4                                                        <---------ICU4    --------->ATHB51                                                       <---------YAB1     <--------ATHB1                                                   ------------>CBF      <---------YAB1                                                 --------->TCP16(1)      <---------ATHB51                                                 <---------PCF2          --------->ICU4                                                 --------->PCF5       <---------YAB1                                                 --------->ZAT18 <---------YAB1  --------->DAG2                                                 --------->TCP20<---------AHL20(2)                                                 --------->TCP15(1)  <---------AHL20(1)                                                 --------->TCP11(2)  --------->AHL20(2)                                                <---------TCP16(2)--------->AHL20(2)  <---------TCP16(2)                                                <---------TCP15(2)--------->YAB1 <---------TOE2(3)        --------->MYB46(3)                      <---------TCP23 --------->AHL20(2)  --------->ALFIN1      --------->ARR14(2)                        ----------->TCP11(1) --------->AHL20(1)           <--   --------->HSFB2a(2)                        --------->ALFIN1 --------->YAB1--------->YAB1       <--   <---------HSFB2a(2)                     --------->DAG2 <---------WOX13(1)<---------YAB1        <-- ------>TEIL                          <---------YAB1------------>ATHB5<---------AHL20(2)         <--- ---------ARR14(2)                   --------->AHL20(2)--------->ICU4<---------AHL20(2)<---------PCF2 ---MYB46(3)                         <---------AHL20(2)<---------ATHB12  --------->AHL20(2)     <---- --MYB52(1)           --------->RAP2.6(3)  <---------TOE2(3)  <---------YAB1--------->ICU4    ------- -------->ARR14(2)   --------->MYB52(1)--------->YAB1  <---------ATHB51--------->YAB1 ----------->TCP11(1)   tgaatctggaacggctgtttttgtaacggctagtttgattttaataaggtgggcccaatgattgattataatataataattataaggtgggcctagtggg  5311100                                             <---------ICU4         <---------ANAC46                                             <-----------GT1        <---------ANAC58 --------->REM1(2)                          --------->ICU4   --------->MYB52(1) -------ANAC58                            --------->YAB1 ------>NtERF2 -------ANAC58      --------->LBD16    ----------->GT1  --------->TCP15(1)      <-------TEIL -------ANAC46     <---------LBD16<---------ZAT14       <---------PCF2         <XXXXXXXXXXXXXXXXXXXXMIR861-5P ------DEAR3(1)   <---------LBD16 --------->ZAT14    --------->ALFIN1       <---------AHL20(2) -----PCF2 <---------YAB1    --------->ARR11(3)  <---------ZAT14    <---------ANAC58        --------- -->ZAT18  --------->ICU4    <---------AHL20(1)  --------->ZAT14   <---------DEAR3(1)      --------->ANAC46   ccgtgtattggtcatgtttatccgggtataatatactgtagtagtaataactatagtggggcctaatgggccgtgtatttgattcatgtttatccgagac  5311200                                                                    <---------LBD16                                                            ------>NtERF2                                                            --------->LBD16                       <--                                     ------>ZmHOX2a(1)     --------->ANAC58                       <--    <---------YAB1----------------->AGL1                   --------->ANAC46           <---------CCA1(2)  --------->CCA1(2)              --------->ARR14(2)        --------->ANAC58        <------NtERF2 ---- <---------ARR14(2)              <---------ARR14(2)  ------>ZmHOX2a(1)    <----------DOF2 --------->HSFB2a(2) --------->ARR11(1)          <-----------RAV1(2)   ----------->RAV1(2)    <---------DAG2  <---------HSFB2a(2) --------->ARR14(2)        <-----------HVH21  ----------------------->TaNAC69(2) <---------DEAR3(1) >LBD16   *TSS <---------CCA1(2) <---------ZAT18  ------>ZmHOX2a(1)--------------------->WRI1    ----   aaggatacgattactctatatccaaacaaggtcagggtcctctaccgtcttcctcctgcttccgccattcttcggacttttcgtcgtcgtctctcgaacg  5311300             <------MYB83                                                                          --             <---------DEAR3(2)                                                      <---------At4g35610     <---------YAB1                                     ----------->GT1       --------->GLK1(2)    -- ---------TGA1        <-------GAMYB                 <---------DOF5.7(2)   --------->YAB1       <----- ---------HVH21<---------MYB52(1)                 --------->DOF5.7(2)    <---------YAB1      -------- ----->bZIP60(2)    ---------->ID1             <---------TOE1(3)      --------->GLK1(2)     --------- ----->ANAC46<------MYB46(1)                   <---------TOE2(3)<-----------HVH21    --------->At4g35610   cgtcactcttatagtcggttttgtcgttgtcagtaatttgcgatttttgaaggttaacgagaaaaatgtcagactctgataatctacagcttccaccatc  5311400        ----------->ARR10     <-----------HVH21    --------->O2    <---------At4g35610    =========================================bZIP_DOF    --------->At4g35610    <---------O2    <---------TGA1a    --------->TGA1a                                                 <----------DOF2  <-----------RAV1(2)     <<<<<<<<<TBF1                    <-------TEIL ------->ETT(2)        <<<<<<<<<TBF1                    <---------ZAT2 --------->HVH21    <<<<<<<<<TBF1                       --------->ZAT2 ----YAB1        <<<<<<<<<TBF1                         --------->ANAC46         <---------HSFB2a(2) ->AtMYB61<---------ARR11(3)      <----------DOF2      --------->ANAC58         --------->HSFB2a(2) >MYB46(3)--------->ARR11(3) <<<<<<<<<TBF1             --------->ANAC58  <---------ZAT6           ---   atcgacaggtgagaccttcttcttcttcttcttcttctttcgcttattcaaatttccaagctacgttcttctttagtgttttcgcgagacgtttttttgt  5311500         <---------ANAC46         <---------ANAC58         <---------ANAC58        --------------->AtSPL3        --------------->AtSPL8      <---------MYB52(1)    <------MYB83    <---------DEAR3(2)                                                                 <------ZmHOX2a(1)    <------MYB46(1)             <-----------RAV1(1)      <---------YAB1--------->ARR11(3)  <---------WOX13(1) ------->DOF2             <------ZmHOX2a(1) --------->GLK1(1)          <---------ARR11(3)  <XXXXXXXXX   aaaagtcggtttcgtacaagtttcgataggatttttgttgggagggatttcgaatttttcttattggtagagagttcttagggtttagaggagattgatc  5311600                                                                                  <------MYB83                                                                                  <------MYB46(1)                                                                                  ----------->GT1                                                                                 --------------->AtSPL8                                                                                 --------->MYB111(1)                                                                                 <---------------AtSPL8                                                                                 --------->MYB111(2)                                                                                 --------->MYB46(2)                                                                                 <---------MYB46(3)                                                                                 --------->MYB59                                                                                <---------MYB55(1)                                                                               <---------ANAC58                                                                               <-------GAMYB                                                                              --------->MYB52(2)                                                                              --------->MYB55(2)                                                                              --------->ATHB12                                                                              <------MYB46(1)                                                                              <------MYB83                                                                          <-----------RAV1(1)                                                                         <---------TOE2(3)                                                                  --------->At4g35610                                                                  <---------At4g35610<-------TEIL    --------->YAB1                                                <---------ZAT2<--------P   ----------->GT1             --------->At4g35610          --------->At4g35610<---------ANAC58   <---------YAB1       <----------DOF2                 ----------->RAV1(1)   <---------MYB46(3) XXXXXXXXXXXMIR858     <---------ICU4   ----------->GT1 ------------>AtMYB77 <---------AtMYB61   agataatgaaaatttgggatgctcatctttatcatctgtattttgttaattctaggggcaacagttgcagctactgatgttggttggtacattcttggtg  5311700  Previous    Next  AGI:  At5g16250.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G02640.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO50168.1) Range:  from: 5310098    to: 5310954    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g16260.1    Description:  RNA recognition motif (RRM)-containing protein. similar to H0306B06.5 [Oryza sativa (indica cultivar-group)] (GB:CAH67490.1); contains InterPro domain GYF (InterPro:IPR003169); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 5311210    to: 5315770    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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