Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      ------>MYB46(1)                                                                                    ------>MYB83                                                                                   --------->MYB52(1)              --------->ICU4                                                     --------->DEAR3(2)         <------MYB46(1)                                                         --------->MYB46(3)         <------MYB83                                                           --------->SPL7         <---------MYB46(3)                                                   <---------SPL7    -----        <---------AtMYB61                                                    <---------ANAC46  ------       <--------P                                                            <---------ANAC58  ------     --------->ALFIN1                                                        <---------ANAC58  <-----     <-----------RAV1(1)                                                    <-----------------------TaNAC69(2)   <---------ANAC58                                  <---------At4g35610    <------NtERF2  <---------ANAC58   --------->ANAC55(2)                               <---------ZAT14      <---------DEAR3(1)   ------   <---------ANAC58                                  --------->At4g35610 --------->At4g35610   ------   --------->O2                    <---------ANAC46  --------->ZAT18     <---------At4g35610  <------   <---------O2       <---------ZAT14              <---------ZAT18   <-----------HVH21     <---------ANAC58   tttagacgtgttggtgaagatgagaacagagacagagccttggaatatagcagtgagcacagttgcaaccatgtgagcggcgtaccaacggtttcttccg  5310600                                     <-----------RAV1(1)                              <------NtERF2                              --------->ATERF1(1)                             ------>NtERF2                             <---------ATERF1(1)                             <---------RAP2.3(1)                             <---------ERF1                             <---------ORA47(2)                             <---------DEAR4(2)                            <---------DEAR3(1)                            --------->DEAR3(1)                            <---------RAP2.3(2)                            <---------ATERF1(2)                            <---------ANAC46                           ------>NtERF2                           --------->ATERF1(1)                           <---------ABI4(1)                          ------>NtERF2                          <---------ATERF1(1)                          <---------RAP2.6(1)                         <---------RAP2.3(2)                         <---------RRTF1(3)                        <---------LBD16    <---------ANAC58            <---------At4g35610         <---------At4g35610<---------RAP2.3(3)                      <-----------RAV1(2)      <---------At4g35610<---------RRTF1(2)<---------bZIP60(2)      --------->LBD16      <---------ZAT2    <---------At4g35610<---------ANAC58         --------->At4g35610      --------->At4g35610<---------DEAR3(1)<---------ANAC46       <---------LBD16      --------->ZAT2    <---------ZAT14   <------NtERF2         --------->GLK1(2)   <-------TEIL         --------->At4g35610<---------O2         <---------ARR14(2) ---->LBD16  --------->DEAR3(1)  <-------GAMYB                  --------->ARR14(2) --->ANAC58  --------->RAP2.3(3)<---------MYB46(3)   <------ZmHOX2a(1) --------->At4g35610 --->ANAC46--------->ZAT14<---------RRTF1(1) <------NtERF2     --------->GLK1(1) ----HSFB2a(2) ----------->RAV1(2)   <---------AtMYB61         <---------GLK1(1) --->HSFB2a(2)------>NtERF2<------NtERF2<---------DEAR3(1) <------ZmHOX2a(1) --->ANAC58<---------ZAT18<---------RAP2.3(1)--------->ALFIN1 <------ZmHOX2a(1) ---LBD16--------->At4g35610--------->ATERF1(2)   <------ZmHOX2a(1) <---------At4g35610           ---   caagatgcagcagcgcagcctgagactgcggcggcgattgtggtggcgtggaggaggatgaggaggaatccgcagatggaagggattagacggagagaga  5310700                                                                     ----------->GT1                                                              <---------ANAC58                                                              <---------ANAC46                                                              <---------ANAC58                                    <---------REM1(1)    <------ZmHOX2a(2)                                  ==============================HOX2a_HOX2a                                  ===============================HOX2a_HOX2a                            ------>NtERF2               <---------ARR11(3)                            --------->HSFB2a(2)         <---------AGP1                         ------>NtERF2                  --------->ARR14(2)                        --------->DEAR3(1)              --------->ARR14(3)                    <---------At4g35610                 <---------ARR14(2)          <-------TEIL <---------ABI4(2)                <-----------ARR10         --------->CCA1(2)  <---------HSFB2a(2)         <---------ARR14(3)        --------->ARR14(2) --------->DEAR3(1)           --------->ARR11(3)        <---------ARR14(2)<------NtERF2         ---------->DOF2      --------->YAB1    <------ZmHOX2a(1)  --------->At4g35610 ----------->GT1------>ZmHOX2a(2) ------>ALFIN1   ---------->DOF2  <------ZmHOX2a(1)   ----------->ARR10                            >>   gtgtgaggaagatacaacttgaagcagcgccgagaaggatgtagttggagaaaaggaagatcttgtgtgtatggtaatgagactcttctactggtgatga  5310800                                                                     <----------DOF2                                                              <---------ANAC58               --------->YAB1                                 <---------ANAC58                 ------              <---------ATHB12                                <---------ANAC46         >>>>>>>>>TBF1 >>>>>>>TBF1  --------->ICU4                         --------->CCA1(2)              >>>>>>>>>TBF1   agaagaaatgaaacccatgatgagttttgagtttttgaaaattttggattttgagaaatgggtttcgttttctttgatgaacagaagaagaagaagagtg  5310900                                                                                                    <                                                                                                    -     <---------LBD16                                                      --------->DAG2      <------    <---------ANAC58  --------->ZAT18                            <---------HSFB2a(2)         <-------    <---------ANAC58 --------->ANAC58                 *TSS   <------------CBF          ----------->HVH21    <---------ANAC46 --------->ANAC58              <---------ZAT14       ---------->DOF2    <-------GAMYB --->ALFIN1         --------->ZAT18                --------->ZAT14    ----------->GT1<---------ICU4 -   tgtgattcgtggaattgagaagagcgcaacgagtttgtttatgtagaagttagtgaagagagagattgtagaaggtaaagtttctaaatatgaccgttgt  5311000                                                                          --------->YAB1                                                        <---------ICU4    <--------ATHB1                                                        -------->ATHB1    <--------HAHB4                                                        <--------ATHB1    --------->ATHB51                                                        --------->ATHB12  <---------ICU4                                                       --------->ICU4     -------->HAHB4                                                   ------------>CBF      <---------ATHB51                                                 --------->TCP16(1)      --------->ICU4                                                 --------->ZAT18         <---------YAB1                                                 --------->TCP11(2)   <---------AHL20(2)                                                 --------->TCP15(1)  <---------AHL20(1)                                                 --------->TCP20     --------->AHL20(2)                                                 <---------PCF2  <---------YAB1  --------->DAG2                                                 --------->PCF5 <---------AHL20(2)                                                ----------->TCP11(1) <---------AHL20(2)                                                <---------TCP16(2)--------->AHL20(2)              <--        --------->MYB46(3)                      <---------TCP15(2)--------->YAB1 <---------TOE2(3)<--      --------->ARR14(2)                        <---------TCP23 --------->AHL20(2)    ----------->TCP11(1)   --------->HSFB2a(2)                        --------->ALFIN1 --------->YAB1--------->YAB1       <--   <---------HSFB2a(2)                     --------->DAG2 <---------WOX13(1)--------->ICU4       <--- ---------ARR14(2)                    <---------YAB1------------>ATHB5<---------YAB1--------->ALFIN1 ------>TEIL                         --------->AHL20(2)<---------YAB1--------->AHL20(1)<---------PCF2 ---MYB46(3)                         <---------AHL20(2)<---------ATHB12  --------->AHL20(2)     <---- --MYB52(1)           --------->RAP2.6(3)  <---------TOE2(3)  <---------YAB1<---------YAB1    ------- -------->ARR14(2)   --------->MYB52(1)--------->YAB1  <---------ATHB51--------->YAB1 <---------TCP16(2)   tgaatctggaacggctgtttttgtaacggctagtttgattttaataaggtgggcccaatgattgattataatataataattataaggtgggcctagtggg  5311100                                             <---------ICU4         <---------ANAC46                                             <-----------GT1        <---------ANAC58 --------->REM1(2)                          --------->ICU4   --------->MYB52(1) -------ANAC46                            --------->YAB1 ------>NtERF2 -------ANAC58      --------->LBD16    ----------->GT1  --------->TCP15(1)      <-------TEIL -------ANAC58     <---------LBD16<---------ZAT14       <---------PCF2         <XXXXXXXXXXXXXXXXXXXXMIR861-5P ------DEAR3(1)   <---------LBD16 --------->ZAT14    --------->ALFIN1       <---------AHL20(2) -----PCF2 <---------YAB1    --------->ARR11(3)  --------->ZAT14    <---------ANAC58        --------- -->ZAT18  --------->ICU4    <---------AHL20(1)  <---------ZAT14   <---------DEAR3(1)      --------->ANAC46   ccgtgtattggtcatgtttatccgggtataatatactgtagtagtaataactatagtggggcctaatgggccgtgtatttgattcatgtttatccgagac  5311200                                                                    <---------LBD16                                                            ------>NtERF2                                                            --------->LBD16                       <--                                     ------>ZmHOX2a(1)     --------->ANAC58                       <--    <---------YAB1----------------->AGL1                   --------->ANAC46           <---------CCA1(2)  --------->CCA1(2)              --------->ARR14(2)        --------->ANAC58        <------NtERF2 ---- <---------ARR14(2)              <---------ZAT18     ------>ZmHOX2a(1)    <----------DOF2 --------->HSFB2a(2) --------->ARR14(2)          <-----------RAV1(2)  ------>ZmHOX2a(1)--------------------->WRI1    ---- --------->ARR11(1)        <-----------HVH21  ----------------------->TaNAC69(2) <---------DEAR3(1) >LBD16   *TSS <---------CCA1(2) <---------ARR14(2)----------->RAV1(2)    <---------DAG2  <---------HSFB2a(2)   aaggatacgattactctatatccaaacaaggtcagggtcctctaccgtcttcctcctgcttccgccattcttcggacttttcgtcgtcgtctctcgaacg  5311300             <------MYB83                                                                          --             <------MYB46(1)                                                         --------->At4g35610     <---------YAB1                                     ----------->GT1       --------->GLK1(2)    -- ---------TGA1        <-------GAMYB                 <---------DOF5.7(2)   --------->YAB1       <----- ---------HVH21<---------MYB52(1)                 --------->DOF5.7(2)    <---------YAB1      -------- ----->ANAC46<---------DEAR3(2)                <---------TOE2(3)      --------->GLK1(2)     --------- ----->bZIP60(2)    ---------->ID1             <---------TOE1(3)<-----------HVH21    <---------At4g35610   cgtcactcttatagtcggttttgtcgttgtcagtaatttgcgatttttgaaggttaacgagaaaaatgtcagactctgataatctacagcttccaccatc  5311400        ----------->ARR10     <-----------HVH21    <---------O2    --------->O2    <---------TGA1a    --------->TGA1a    <---------At4g35610    --------->At4g35610    =========================================bZIP_DOF               <----------DOF2  <-----------RAV1(2)     <<<<<<<<<TBF1                    <-------TEIL --------->HVH21       <<<<<<<<<TBF1                    <---------ZAT2 ------->ETT(2)     <<<<<<<<<TBF1                       --------->ZAT2 ----YAB1        <<<<<<<<<TBF1                         --------->ANAC58         <---------HSFB2a(2) ->AtMYB61<---------ARR11(3)      <----------DOF2      --------->ANAC46         --------->HSFB2a(2) >MYB46(3)--------->ARR11(3) <<<<<<<<<TBF1             --------->ANAC58  <---------ZAT6           ---   atcgacaggtgagaccttcttcttcttcttcttcttctttcgcttattcaaatttccaagctacgttcttctttagtgttttcgcgagacgtttttttgt  5311500  Previous    Next  AGI:  At5g16250.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G02640.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO50168.1) Range:  from: 5310098    to: 5310954    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g16260.1    Description:  RNA recognition motif (RRM)-containing protein. similar to H0306B06.5 [Oryza sativa (indica cultivar-group)] (GB:CAH67490.1); contains InterPro domain GYF (InterPro:IPR003169); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 5311210    to: 5315770    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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