Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100   -------ZAT14                                                              <---------ANAC58 --->GAMYB                                          --------->ALFIN1       <---------ANAC58 ------ALFIN1       ----------->HVH21        --------->YAB1      ----------->GT1 ----->AtMYB61    --------->At4g35610        <-----------GT1     --------->LBD16 ---->MYB46(3)    <---------At4g35610  --------->YAB1          <---------LBD16------->TEIL  ---------   cacactgagagggacgatttagctgacaatttcggtagcaaacaaaataacaatgtgaggcagaatgcggaaaattggcgaacctcgaattgaattatac  5297600                                        <---------GLK1(1)                                        --------->GLK1(1)                                       --------->ARR11(3)                                   ---------->DOF2                               =====================HOX2a_HOX2a                             <---------ARR14(2)                            <------ZmHOX2a(1)                           --------->HSFB2a(1)                           --------->HSFC1(2)                          <------NtERF2                           <---------HSFC1(2)------>ZmHOX2a(1)         ------>NtERF2             =========================HOX2a_HOX2a                    <---------RAP2.6(2)             <------ZmHOX2a(1) ------>ZmHOX2a(2)                  <------NtERF2                  ----  <---------GLK1(1)        <---------HSFB2a(1)            <---------ANAC58         <------ZmHOX2a(1)  --------->GLK1(1)--------->MYB52(1)  <---------ARR11(3) <---------ANAC58      <---------HSFB2a(2) >YAB1    <-----------RAV1(2)--------->ARR14(2)           <---------ANAC46      --------->HSFB2a(2)   cgagaaatctgatcaggagggaaacgggaaggatcggaaaagaactccttaagacgaattgcttgggcatcgcggccatcgtcgaggagctcgtgaagaa  5297700         <------NtERF2        <-----------HVH21        <---------RAP2.6(3)        ------>NtERF2       --------->DEAR3(1)                                              --------->LBD16       --------->RAP2.3(3)                                             ------>NtERF2       --------->RAP2.3(2)                                            <---------ALFIN1       --------->RAP2.6(2)                     --------->DAG2        <---------LBD16      --------->RAP2.3(1)              --------->WRKY12              ---------->CDC5    --------->ANAC46                 <---------At4g35610         ------>ZmHOX2a(2)    ------->GAMYB                    --------->At4g35610   ------->GAMYB                            <    --------->ANAC58              <------ZmHOX2a(1)     --------->MYB52(1)                       <---    --------->ANAC58      ------>ZmHOX2a(1)   ---------->DOF2   <------ZmHOX2a(2)               <---- ----->At4g35610 <--------P       =====================================HOX2a_HOX2a         <<<<<<<<<TBF1   gctcaaacgccgtcaagaggtagttctcctccatcaggaagttgacgaaaaagttgcacaacgacgatcgctccgcgtccatgttttgttttcttcttct  5297800                              <---------ALFIN1       --------->ZAT6      --------->ARR14(2)  --------->LBD16          <---------ARR14(2) --------->ANAC46         <------ZmHOX2a(1) <---------LBD16       --------->At4g35610       <---------YAB1                      ------>ZmHOX2a(1) ---------LBD16      --------->YAB1             <---------ARR11(3)             <---------DAG2 --------HVH21      <---------ATHB12  <---------TOE1(2)                        <----------DOF2     -- ------DOF2       --------->WOX13(1) ------>ZmHOX2a(1)             --------->YAB1    ================   ttcacgggaacactaaaatccaatcagaggaaacacctccttcgttccaatatcactgagcattccaaatgaaaattcaaacttttcctctctcgattcg  5297900                                                                               ------------>CBF                                                                              ----------->RAV1(1)                                                                             ----------->HVH21                                                                            --------->SPL7                                                                          <-------MYC3                                                                          <-------PIF4                                                                          --------->TOE1(2)                                                                          <-------MYC2                                                                          ------->PIF4                                                                          ------->MYC3                                                                          ------->MYC2                                                                          <-------MYC4                                                                          ------->MYC4                                                                          <-------PIF5                                                                         <---------ANAC55(2)                                                                         --------->O2                       <---------At1g77200                               <---------ANAC58                       --------->ETT(1)                                  <---------ANAC46                  <---------ANAC58                                       <---------TGA1a                  <---------ANAC58                                       --------->TGA1a                  ------>ZmHOX2a(2)                                      <---------ANAC58                --------->ARR11(3)                                       --------->ANAC55(2)                <---------ARR11(3)               --------->LBD16         <---------O2                <---------ARR14(2)              --------->HSFB2a(2)     ------------>OsbHLH66          <-----------GT1  --------->ZAT14      --------->ANAC46      <------ZmHOX2a(2)  <---------GLK1(2)    <---------DREB2C(2)      <---------HSFB2a(2)  --------->ARR11(3)  <---------ARR14(2)   <---------DEAR4(1)      <---------LBD16       <---------ARR11(3)  --------->ARR14(2)   <---------DEAR3(1)------->TEIL      --------->MYB52(1)*TSS               <---- ---->ZmHOX2a(2)--------->ARR14(2)  --------->At4g35610   ----------->TGA1------->PIF5  <------------ =====HOX2a_HOX2a<------ZmHOX2a(2) --------->DEAR3(1)     ----------->HVH21--------->ALFIN1 <-------TEIL   atcggattcgattcaccagatcgtgtcggtgttctcgccgatgaatctctccggaagcgagtgacggtagagatcacgtgcgacaatgtaatggtacatc  5298000                                                                                                <----                                                                                         <-------MYC2                                                                                         ------->MYC3                                             --------->REM1(2)                           ------->MYC2                                           <-------MYC4                                  <-------MYC3                                           ------->MYC3                                 <---------bZIP60(2)                                           ------->MYC4                                 <---------TGA1a                                           <-------MYC3                                 --------->O2                                           <-------MYC2                                 <---------O2                                           ------->MYC2                                 --------->TGA1a                                          <---------TGA1a                               =============                                          --------->TGA1a                               <---------ANAC58                                          --------->O2                                  <---------ANAC55(2)                                          <---------O2                                  <---------ANAC55(1)                                          <--------ABF1                                 <---------ANAC46                                          <---------ANAC46                              <---------ANAC58                              --------->ANAC58                                          =============                              --------->ANAC58      <-------TEIL                        --------->ANAC55(2)                   <---------ANAC46       --------->ANAC55(2)                        ----------->HVH21                 ----------->GT1          <---------ANAC55(2)   <---------GLK1(2)   <-----------HVH21 -----ANAC46   <---------GLK1(2)     --------->ANAC46  --------->ANAC46        <---------MYB52(1) ---AtSPL8     <------------CBF  --------->CCA1(2) <-----------HVH21      --------->bZIP60(2)   <----   gtggattagttgaaccagattgtgtaaacagtaagctataagacacgtgtacggttcacatcacaagattatggcaacgtcgtttgtgtcacgtgtttgc  5298100                               <---------ANAC58                               <---------ANAC58                          <---------DAG2                                                          ---  ----------------->AGL1  <----------DOF2                                                       <---- -----ANAC58          <---------WRKY12 --------->YAB1                                           <---- ===========================bZIP_DOF--------------->AGL15                                       <---- ===========================bZIP_DOF<---------------AGL15     ---------->DOF2               <-------GAMYB -----ANAC58     ---------->DOF2 --------->AtLEC2    <-----------GT1       <----------DOF2 <---------MYB46(3)   ttaggccatattgagagagaaaagtcaacttttccttgcaaaaataagaaaattttaaacttacaaaagtgtttagtctttttgctaattgggcgattgc  5298200                              <---------At4g35610                              --------->LBD16                             <---------ANAC46                            <---------LBD16                        -------->HAHB4                        <---------ICU4                       --------->ICU4                       <---------YAB1                     <--------HAHB4                     <---------ICU4                                                           -------                    --------->ICU4                                                           <-------                    <---------YAB1               <---------ICU4                            --------->WOX13(1) -------->GT1     --------->YAB1                 --------->YAB1                <---------ATHB12 -----ANAC58    --------->ANAC58                <---------ATHB12         --------->bZIP60(1)------>MYB46(1) -----ANAC46    --------->ANAC58       --------->MYB46(3)     <-------TEIL   --------->WOX13(1)     < -----ANAC58  --------->CCA1(2)      <-----------GT1--------->YAB1       <---------bZIP60(1)------>MYB83   tggtaaaacatataagataagcataattattccgcagattaaccaatacaatcatcaaaatatgttcatcttatgacatcaatgaattctcaccaatcac  5298300                                                                   --------->TOE2(3)                                                                   --------->TOE1(3)                            --------->AHL20(2)                     ----------->GT1                         --------->YAB1              ---------->DOF2           <---------------AtSPL8                 --------->HSFB2a(2)                    <----------ID1   ----------->RAV1(1)  <---------YAB1  --------->AHL20(2)----------->GT1             <---------YAB1 -->YAB1   --------------->AtSPL8  <----------DOF2<---------HSFC1(1)             <---------ZAT6 --ATHB12--------->YAB1--------->ARR11(3)         <---------HSFB2a(2)          <---------ANAC46 ------ZmHOX2a(1)      <---------ARR11(3)         --------->HSFC1(1)--------->At5g28300<-----------GT1   aaggacaacaaaaatagtactccaatatcataaatttctttataaaatgtttctagaaagatgaaaaaaccgtaaacttcttcgtgttattacaacaaga  5298400                                           ---------->DOF2                                        --------->ANAC58                                      --------->CCA1(2)                                 ---------->DOF2 --------->At4g35610                      <------ZmHOX2a(2) --------->ANAC58                                          ---         ----------->GT1 <---------ANAC55(2)--------->DAG2    ----------->GT1                     ---   ---------->DOF2  --------->YAB1   <----------ID1       ------->TEIL                          -----   gtgagtaaagaaggtgaaacaaggatcacttgaatgaaagagacgaaaagcagaagcatgtatattgtataatatgtatgggaaccaaaacaaaattgta  5298500  Previous    Next  AGI:  At5g16210.1    Description:  HEAT repeat-containing protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO49372.1); similar to hypothetical protein OsJ_001936 [Oryza sativa (japonica cultivar-group)] (GB:EAZ12111.1); similar to hypothetical protein OsI_002127 [Oryza sativa (indica cultivar-group)] (GB:EAY74280.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro domain HEAT (InterPro:IPR000357); contains InterPro domain LisH dimerisation motif (InterPro:IPR006594); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) Range:  from: 5290870    to: 5297977    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g16220.1    Description:  octicosapeptide/Phox/Bem1p (PB1) domain-containing protein. similar to octicosapeptide/Phox/Bem1p (PB1) domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G01190.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73294.1); contains InterPro domain Octicosapeptide/Phox/Bem1p (InterPro:IPR000270) Range:  from: 5298306    to: 5300613    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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