Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                         --------->HSFB2a(2)                  ----------->RAV1(1)                  <---------HSFB2a(2)                 --------->AtMYB61                    <---------LBD16                 <---------ALFIN1          --------->ARR14(2)     --------->WOX13(1)                    <---------ARR14(2)      <----------DOF2  ------->TEIL  --------->MYB46(3)      --------->ANAC58          <---------ANAC58 ----------------->WRI1                 --------->ANAC46          <---------ANAC58 ----------->GT1 -------DOF2  --------->ANAC46          --------->ANAC58--------->LBD16 <---------ANAC58           <- >AtSPL8     ------>ZmHOX2a(1)    --------->MYB46(3)--------->ARR14(2)  <---------ANAC58           -- -AtSPL8--------->YAB1      --------->At4g35610     <---------ARR14(2)  <---------ANAC46        <----   tttgaatctatcatcctcaccaccagaagtagatgaacaaacccgaaacctctgtttccggaaaactggcttttgcgtttgaaaatggtaaacacttggt  5271500        --------->ZAT18                                                                            --        <---------ZAT18               --------->ARR11(3)                                        -----    <---------MYB52(1)                <---------ARR11(3)                                      ------- --------ARR14(2)                 ---------->DOF2                         <-------TEIL---------->TaMYB80 ------->ARR14(2)        <---------MYB46(3)                       <----------DOF2     <---------KAN4(2) -----ANAC46          <-----------RAV1(1)              --------->ICU4    --------->GLK1(2)<-------TEIL   gtatacgttgggcacaacatggaactgttgttgattcaaagacctattgaaattgaaatgactagaaactttgagattcaatacttggaatatacataaa  5271600                                                                                                   --                                                                                                   --                                                                                                   <-                                                                                                   --                                                                                                   <-                                                                                                  <--               --------->CCA1(2)                                                                  <--              <---------ARR11(3)                                                      <---------ZAT18      <----------DOF2                                                               <---------At4g35610 ---------->DOF2                                   --------->YAB1                ---------->DOF2  --- ------->CCA1(2) <---------AHL20(2)     --------->MYB46(3)                       <-------TEIL     --- ------>GT1  <------ZmHOX2a(1)        <-----------GT1   --------->TOE2(3)       --------->CCA1(2) <-- --->DOF2 <---------LBD16        --------->YAB1  --------->GLK1(2)      --------->MYB52(1)      -----   gataaaagcttttcaggatataatgaaattcgaaatcatataacaactgagaatcaaaacttaatgaaacccattaacagagatacagcgcagataaaaa  5271700     <---------ANAC46 ------>HAHB4 ------->ATHB51 -------ATHB1 ------->ATHB12 --------ICU4                               --------->GLK1(2) -------ATHB51                        --------->HSFB2a(2) -------YAB1                <---------At4g35610 ------>AHL20(2)            --------->At4g35610 ------>ICU4          <------ZmHOX2a(1)--------->LBD16                       --------->ANAC46 <------ -------AHL20(2)     --------->ZAT14  <---------HSFB2a(2)             <---------ICU4       <---------TOE2(3) ---->YAB1           <---------ZAT18 <---------LBD16          --------->At4g35610     ------->TEIL  <   ataattgaagtgtaatcgaacagaggactcagcaaaatttctggagaatcagagattagcaatgagctacaaggattacacaaaaatgtatttgtggttt  5271800                                                                                                <----         --------->AHL20(2)                                                                <---------HSFB2a(1)         <---------AHL20(2)                                                                --------->HSFB2a(1)   ----------->GT1                                  -------->P           <-----------GT1   --------->HSFC1(2)   <---------YAB1                                <---------ANAC58    <---------ARR11(3)    <---------HSFC1(2) ---ANAC46                              ----------->GT1      <<<<<<<<<TBF1                <---------KAN4(2) ---------AHL20(2)          <------ZmHOX2a(1)    <---------ANAC58   <------ZmHOX2a(1)<---------LBD16   atattatgttataaattttcagtagaagaaggataagtgagaaggaaaatagcttacctcttcttcttcaggatttttcgaaacaatttcggaattttct  5271900                                                                  --------->PCF5           <---------                                                             <------------CBF              ----------                        *TSS                        <---------ARR11(3)         --------->ICU4 ------DOF2         --------->CCA1(2)               --------->ARR11(3) <---------MYB52(1) <----------   tttgcgaagacgttggaacgagatagaagtagaacgatgaaatactgagacgaagatgttagaaattggtcccgttttgtattaatgggcttactaatat  5272000                                                                                           <---------YAB1                                                                                    ------->MYC3                                                                                    ------->MYC4                                                                                    <-------PIF4                                                                                    <-------MYC3                                                                                    ------->PIF4                                                                                    <-------MYC2                                                                                    ------->MYC2                                                                                    <-------PIF5                                                                                    <-------MYC4                                                                                    ------->PIF5                                                                                   --------->bZIP60(2)                                                                                   <---------TGA1a                                                                                   --------->ANAC58                                                                                   --------->O2                                                                                   --------->ANAC55(2)                                                                                   <---------ANAC55(2)                                                                                   --------->TGA1a                                                                                   --------->ANAC58                                                                                   <---------O2                                                                                  ------------>OsbHLH66                                                                                 <---------ALFIN1                                                                                 <------------OsbHLH66                                                        ----------->HVH21      ------>NtERF2                                                        --------->TGA2(2)      <---------RAP2.3(1)                                                       <-----------HVH21       <<<<<<<<<AtERF-3                                                       <-----------TGA1        <---------ERF1                                                      --------->ANAC58         <<<<<<<<<AtERF-4                                                      --------->ANAC58        <---------RAP2.3(2)           --------->ATHB12                           --------->ANAC55(2)     <---------RRTF1(3)           -------->HAHB4                             <---------ANAC55(2)     <---------RAP2.6(2)          --------->ICU4                              --------->ANAC55(1)     <---------RAP2.3(3)        --------->YAB1                                --------->ANAC46        --------->ATERF1(2)  ----------->RAV1(1)                                <-----------STF1         --------->bZIP60(1) <---------ZAT18                                    <-----------GT1           <---------DEAR3(1) --------->ZAT18       --------->YAB1            <---------YAB1               <---------ATERF1(2) ------AGL15          <---------AHL20(2)        --------->AHL20(2)           --------->RAP2.6(3) ----->AGL15    ----------->GT1             --------->YAB1    <---------MYB52(1)<------NtERF2 -------AGL2   ----------->GT1             <---------YAB1    --------->At5g28300--------->ATERF1(1)   tagcccacaaaaatgatgggttaaataatagtggcccaagttactatgatttttatacgtcaccgttactatgctcaatggcggcacgtgagtactattg  5272100        <---------DEAR3(1)       --------->SPL7                                                            <---------MYB59      --------->ALFIN1                                                          --------->ANAC46     <-------PIF4                                                               <---------ANAC55(2)     ------->MYC2                                                               --------->ANAC58     <-------PIF5                                                               --------->ANAC55(2)     ------->PIF5   --------->TGA2(2)                                           <---------ANAC58     ------->MYC4 --------->ANAC55(2)                                           <---------ANAC58     <-------MYC2 --------->ANAC58                                              --------->ANAC58     ----------------------->TaNAC69(2)                                    <----------DOF2     <-------MYC3 --------->ANAC46                                        <-----------ARR10     ------->MYC3 --------->ANAC55(1)                                   <---------RAP2.3(1)     <-------MYC4 --------->ANAC58                                      ------>NtERF2     ------->PIF4<-----------STF1                                      <---------DEAR3(1)    <---------ANAC55(2)                                                <---------RAP2.3(2)    --------->ANAC55(2)                                               <---------LBD16    --------->O2 <-------TEIL<---------ARR11(3)                      ------>ZmHOX2a(1)    <---------O2<-----------GT1       --------->LBD16               --------->TOE2(2)    <---------TGA1a<-----------HVH21 <---------HSFB2a(2)           ----------->RAV1(2)    --------->TGA1a<-----------TGA1  --------->HSFB2a(2)          <---------ATHB12               <---   ------------>OsbHLH66     --------->GLK1(2)                   --------->ARR14(2)        <---------   <---------------AtSPL3    <-----------ARR10            --------->ARR14(2)    --------->ANAC55(1)  <------------OsbHLH66--------->AtLEC2    --------->GLK1(2)     <---------ARR14(2)     <----------DOF2   aataacacgtgcggctatatacgtcatccaaaatctaatccagaaaatccaacgttgccaaatcgccaatcctgcggctcttacgtaactcttttacttc  5272200                                                 --------->AHL20(2)                                                --------->AHL20(2)                              <----                                          ----------->GT1                                     ------>NtERF2                                          --------->YAB1                                      -------                                       <---------ICU4                                        --------                                       --------->ATHB51                                <---------ICU4                                       <--------ATHB1                              ------>ZmHOX2a(1)           <----------DOF2             -------->HAHB4                      <---------AHL20(2)--------    <---------ANAC58                   --------->YAB1        <---------AHL20(2)   <---------MYB59    <---------ANAC58                  <---------ATHB51       --------->AHL20(2)  ----------------->AG   --------------->AtSPL8             <---------YAB1    ===========================================MADS_MADS  <-----------GT1                     --------->ICU4    --------------->AGL15    ----------------->AGL1 -------DOF2                        --------->YAB1     <-----------GT1     --------->AHL20(2)-------- --GT1<-----------GT1    <---------AHL20(2)     <---------AHL20(2)        --------->AHL20(2)<--------   tttttttcttacccttttatcgactaatttatgtcgaataataattgtaaataattttctcaatttataaactcaaaaaaatttcctaattagtcccgcc  5272300                                                                                                <---- -----ALFIN1                 <---------AHL20(2)                                                 <---- -->LBD16                   --------->AHL20(2)                   ------>MYB46(1)                ----- ->ANAC46                  <---------WOX13(1)       <-----------GT1                            ------ ->ANAC58              <--------P                <---------ICU4  ------>MYB83            ------->MYC3 ->ANAC58              <---------WOX13(1)       --------->ICU4  --------->WOX13(1)       <-------MYC3 -LBD16              <---------MYB46(3)   ------>ZmHOX2a(1) <-----------GT1 ---------->DOF2<-------TEIL   acttagttcgatttagttgatactggttgatttattcaaatttcctagcaaatattacaaaattaccaatccaaaattgaaagttgcatcacatgcatta  5272400  Previous    Next  AGI:  At5g16140.1    Description:  peptidyl-tRNA hydrolase family protein. Identical to Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplast precursor (CRS2B) [Arabidopsis Thaliana] (GB:Q9LF14); similar to peptidyl-tRNA hydrolase family protein [Arabidopsis thaliana] (TAIR:AT5G38290.1); similar to peptidyl-tRNA hydrolase family protein [Arabidopsis thaliana] (TAIR:AT5G38290.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO49346.1); contains InterPro domain Peptidyl-tRNA hydrolase; (InterPro:IPR001328) Range:  from: 5270173    to: 5271924    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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