Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                       --------->ZAT14                                                                                    <---------ALFIN1                                                                                    --------->AtMYB61                                                                                    ----------->RAV1(1)                                                                                   --------->ANAC46                                                                                 --------->ANAC58                                                                               <---------ALFIN1                                                                             ------>MYB83                                                                           --------->AtMYB61                                                              --------->At4g35610--------->ANAC46                        =========================================MADS_MADS ------->GAMYB--------->At5g28300                     --------->ARR14(2)                <---------MYB46(3)  <---------MYB59                     ------->TEIL                 --------->MYB46(3)      --------->MYB46(3)        <      <---------ANAC46  <-----------------AGL3  <---------------AGL15   --------->WOX13(1)          =      <---------ANAC58 ------>ZmHOX2a(2)       <-----------------AGL3  <---------WRKY38(1)          <      <---------ANAC58<------ZmHOX2a(2)  <---------ARR11(3)   <---------At4g35610--------->ANAC58---- ------TEIL          <---------ARR14(2)  --------->ARR11(3)----------->ARR10 ------>MYB46(1)     <--- -->AHL20(2)   <---------ARR14(2)---------->DOF2--------------->AGL15 --------->WRKY18(1)       <----   atacatttgcttgtgcaggtatggatcccataaatgaaaggaagatgtttcaacaattggttagagctgctagtcaaccaaacacaccacagtaagtttt  5199300                                                   --------->DAG2                                             <---------ANAC46                                             <---------ANAC58                                             <---------ANAC58                                             ----------->GT1                                        --------->TGA1a                         <-------GAMYB                                        --------->O2    --------->ANAC58       <-----------RAV1(1)                         --------->LBD16=====================bZIP_DOF <------MYB83 ----------DOF2         <---------LBD16 =====================bZIP_DOF <------MYB46(1) <------MYB83 =================================================bZIP_DOF           --------->MYB59<--------P ---------DAG2--------->ANAC58          ================================================MYC_MYB ------>ID1   --------->ANAC58          <---------TGA1a --------->ANAC58  <----------DOF2<-------TEIL --------GT1  --------->ANAC46          <---------O2----------->GT1  <---------AtMYB61<------MYB46(1) -------GT1--------->TOE1(2)     --------->ZAT14  ---------->DOF2 --------->ATHB12<---------REM1(1)   tcctttttctattcatacgaaaacaccctggaaactgctctcaagtgtcgtaaaaagtaagaaacaaatgtttggtctttgctgttgtaggtgcttctta  5199400                                                                                ------>NtERF2                                                                               <---------ARR14(2)                            <---------ZAT14                                    --------->ARR14(2)                    <---------ZAT2                                            <------NtERF2                    --------->ZAT2                                     <---------CCA1(2)                 --------->LBD16                                    ------>ZmHOX2a(1)               <---------LBD16                               ------->TEIL    --------->LBD16     <---              --------->MYB52(1) --------->ZAT14          <---------YAB1   <---------LBD16       ----   ctgaccccaaaactcttaccggagctagaatacagtgaagcctgtagcattctgaacatcatgaacggtccttatatcgcggagccttcaaaagtttgga  5199500               <---------ZAT18           --------->ALFIN1                                          <----------DOF2        <---------MYB46(3)                                          <---------ICU4  --------->ANAC55(2)                                              <------------------------ANAC81 ------At4g35610                  <---------ARR14(2)    ------>ZmHOX2a(1)             <---------HSFB2a(2) ----->At4g35610                  --------->ARR14(2)   <---------MYB59   <-----------------AGL2     -   gcttaggtgatagttggggcagtctcaatagacggagaaccgaagctagtcaatgttcctaacttgatcatcttttctgttttgggttttcgaagaacaa  5199600                         <---------WRKY12                    --------->SPL7                   ------>MYB46(1)                   ------>MYB83                   -------->P    <------------CBF                   --------->MYB52(1)                  --------->MYB55(1)                 ----------->HVH21                 --------->DEAR3(1)         ------->TEIL<-----------TBP                --------->MYB46(3)     ----------->RAV1(2)  <---------TOE2(3)    ------------>CBF                --------->DEAR3(2)    ------->TEIL  <---------ANAC58        ---------->DOF2    ------   <---------AHL20(2)  <-----------HVH21--------->TOE1(3)   <---------TOE1(3)--------->DAG2--------->DAG2 ------>TEIL  <-----------GT1<---------At4g35610    <---------ANAC58   ----------->GT1    ---------->DOF2   tgtattttatgctattaaaccgaccggtcagagcagattgaacctgaaccgatttcgtttttatggtttgcaaatgtaaaaagttcaatggataaagttt  5199700                         --------->HSFB2a(2)                         <---------HSFB2a(2)                        <---------LBD16                      <---------ARR14(2)                 --------->AHL20(2)                 <---------AHL20(2)              *TSS    --------->ARR11(3)                                   --------->O2      <-------             <-----------TBP  ----------->GT1                  ------>ZmHOX2a(2)             <-------             --------->AHL20(2)                               --------->GLK1(1)              <-------           <---------WOX13(1) --------->ANAC55(2)            <---------ARR11(3)            <---------At5g28300    <---------DAG2<-----------------AGL3              ------>ZmHOX2a(2)    --------->TGA1a<----------    <----------DOF2  <---------CCA1(2)        <---------YAB1 --------->ARR11(3)   <----------DOF2 --->GLK1(2) <---------AHL20(2)    <---------YAB1  --------->ATHB12        ==================bZIP_DOF   ctgaagctttttgatttatatatatatctggaacgtgataatacgcgtatgaatgatcgatgtgatctccaagtccaacgtctcctttctatttaccgtg  5199800                                                                                              <------                                                                                           ------>ZmHOX2a(2) --ANAC58                                                                            <----------DOF2 --ANAC58                                                                       --------->ATERF1(1) < --ANAC46                                                 <---------ANAC46     <---------ATERF1(1) <- -GT1<----------DOF2                           --------->GLK1(1)               ------>NtERF2  <------   ttccttcctttgaagtcattcttcaattcatcgctccattgttcttcagatttcaattttgctgggaaattttagagtaggcgactcctttgatcgcctt  5199900                                         ----------->HVH21                           --------->ANAC58             <------MYB46(1)                           --------->ANAC58             <------MYB83                         --------->CCA1(2)          <-----------RAV1(1)                        --------->ARR14(2)      --------->LBD16                        <---------ARR14(2)    <---------LBD16                    --------->GLK1(2)                 --------->ARR11(3)     ------>ZmHOX2a(2)           <---------DAG2 ---DAG2         <---------ARR11(3)    <---------At4g35610          <----------DOF2 ---------AHL20(2)--------->GLK1(2)    --------->At4g35610  ----------->ARR10------>NtERF2 ----------GT1 ----------->ARR10      <---------AGP1<---------HSFB2a(1)     <---------ETT(1) ----DOF2      <---------TOE2(3)      <---------ARR11(3)<---------MYB46(3)  --------->ANAC46    <----   atttcatttcgaaagttgagattttggatacgaccctcttgatctgacaccggaatgttggtgagtttcgctttttctccgacaatctttctctgtttct  5200000                                                                                              <------                 <---------ZAT6                                                              <-------              <---------MYB52(1)                                                             --------         ------>ZmHOX2a(2)                                                                 <---------ANAC46       --------->ARR14(2)                                                                  <---------ANAC58       <---------ARR14(2)                                                                  <---------ANAC58    <---------HSFB2a(2)                                                                  <---------ANAC46    --------->HSFB2a(2)  --------->ARR11(3)               <----------DOF2            <----------DOF2   <---------LBD16   ---------->DOF2                <-----------GT1                 <---------ANAC46 <-----------GT1 <---------ANAC46             ---------->DOF2                       <---------ANAC58 ------DOF2  <-------GAMYB                   <---------AHL20(2)                     <---------ANAC58   ttttttctggatcgtcgttgtgttaaagaactggtcaccatgagtatataaagtttacctctttcttcagcattttgctactgtttgcgttttgggtgtt  5200100                                                <---------AHL20(2)                                                --------->AHL20(2)                                                <---------AHL20(1)                                                --------->AHL20(1)                                               --------->AHL20(2)                                            <---------GLK1(2)                                         <---------HSFB2a(2)                                         --------->HSFC1(1)   <---------ANAC46                                         --------->HSFB2a(2)  <---------ANAC58                                         <---------HSFC1(1)   <---------ANAC58 -GAMYB      --------->ATHB12            >>>>>>>ZML2       <---------WOX13(1) ----RAV1(1)<---------YAB1            --------->ARR11(3) --------->ATHB12 ->ALFIN1 <-----------GT1        --------->ANAC46       <---------YAB1                          -----   gctctatatatatcaccattggtctaattctatctacgaagttctagaattttatttgctgattgcgttttttctgcaaaaacccttctcttagagtcat  5200200  Previous    Next  AGI:  At5g15920.1    Description:  structural maintenance of chromosomes (SMC) family protein (MSS2). similar to MIM (HYPERSENSITIVE TO MMS, IRRADIATION AND MMC), ATP binding [Arabidopsis thaliana] (TAIR:AT5G61460.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40770.1); similar to SMC5 protein [Oryza sativa] (GB:CAD59412.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ54995.1); contains InterPro domain RecF/RecN/SMC protein, N-terminal; (InterPro:IPR003395) Range:  from: 5195686    to: 5199562    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g15930.1    Description:  PAM1 (PLANT ADHESION MOLECULE 1); RAB GTPase activator. similar to plant adhesion molecule, putative [Arabidopsis thaliana] (TAIR:AT3G02460.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96952.1); contains InterPro domain RabGAP/TBC; (InterPro:IPR000195) Range:  from: 5199714    to: 5202455    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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