Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    ---                               ------>ZmHOX2a(1)                         ------->GAMYB            ---                         --------->ARR11(3)                             --------->MYB46(3)      <----          ----------->RAV1(2) --------->TOE2(3)                       --------->YAB1       <---------At4g35610        <---------ALFIN1 <---------ARR11(3)<---------AHL20(2)        <---------ATHB12      --------->At4g35610 -----HVH21          ---------->DOF2  ----------->GT1            --------->MYB46(3)     <---------At4g35610   actgaaaacaacacctgtcttaacaaagttctcctcaatacggttttaaatgtcaaattcaaatgtaaccaataaccatcgtctctggtcttctgctacc  5195300                                                                                 <---------YAB1                                               <---------ARR11(3)             <---------YAB1                                               --------->ARR11(3)            <-----------TGA1                                         <---------ICU4                     --------->YAB1                                         --------->YAB1                  ------->GAMYB --------->AHL20(2)                     <---------ATHB51                --------->MYB46(3) --->MYB83                              --------->ICU4                --------->YAB1          <------ --->MYB46(1)        <-----------GT1    <---------ATHB12             <---------ATHB12         <------ -----MYB59<----------DOF2     <------ZmHOX2a(1)  <----------DOF2--------->MYB46(3)      <-------TEIL   aaataaactatgactttcgcatattacacaataggagaacaaataatgaaatctttttgaaactggaaccaataaccatcgtcattagagattcaacttt  5195400                                                                                                  ---                                                      ---------->DOF2                           <----                                             --------->ANAC58       ------->TEIL          --------->AHL20(2)                                             --------->ANAC58       --------->GLK1(2)     <---------AHL20(2)                  >>>>>>>>>>>>>>>>>LFY--------->At4g35610   ------>NtERF2                --------->AHL20(2)              --------->GLK1(2)      --------->ARR11(3) --------->DAG2         --------->LBD16 ------ ----DOF2 --------->YAB1             <---------ARR11(3)--------->DAG2        <---------LBD16  <------ ---DAG2 <---------YAB1 <-----------HVH21    --------->ANAC46    <---------ATHB12     <---------AHL20(2)   tttggtttgttttgataatcttccaatgtcaagactcaagagcttccacacaaaaaaaaaggggcctatgaatctgtaaaccgggtttttatttaataac  5195500                                                            ---------->DOF2                                                    <---------TOE2(3)                                                    <---------TOE1(3)                                                 <------NtERF2                                                ------>NtERF2                                    <---                                                <-----------HVH21                              <-----                                               <---------ANAC46                            <---------AtMYB61 ------>LBD16                                 --------->RAP2.3(1)                        <----------DOF2 -----LBD16      <---------AHL20(2)         --------->DEAR3(1)                       --------->ZAT18 --->MYB52(1)   <---------AHL20(2)         --------->DEAR3(2)                        <---------ZAT14 -----GT1       --------->AHL20(2)         --------->MYB46(3)                        <---------ZAT18   cggacttaatgagtcgattttaattttaaaacgagttgaatttgaaccggcgtcaaggttttaaaaggctaacctagagagagagagtgtgctttggtcg  5195600               <---------TOE1(2)               --------->LBD16              --------->LBD16              <---------LBD16                 --------->ZAT2        <----------DOF2                       <---------At4g35610  <---------ANAC58       <----------DOF2      --------->At4g35610  <---------ANAC58       <---------DAG2   <-----------HVH21           ------------>CBF              - ---NtERF2  <---------LBD16              <----------DOF2  --------->MYB52(1)                        - ----DEAR3(1)<---------LBD16  <---------AtLEC2<---------ZAT2 ----------->GT1          *TSS         --   tcgtgcttctcttttcccgggttttcgctttttcatggtttcactttcagctctgcaaacaaactgaaaaatcgcaattcagatagagtctagggtttat  5195700                --------->LBD16               <---------ANAC58               <---------ANAC58              <---------LBD16            --------->ARR14(2)            <---------ARR14(2)     ----------->GT1                                                             --------->GLK1(1)   <---------TOE1(2)                                                        <---------LBD16 -------->TOE2(1)          <-----------GT1   <-----------GT1          <-----------------AGL1 -------->TOE1(1)--------->ANAC46  <---------RAP2.6(2)                <---------HSFB2a(2)      <----- ---->ZmHOX2a(1)<---------ZAT18   --------->RAP2.6(3)                 --------->HSFB2a(2)<----------DOF2   cctcgtatggttcaattccgcgctccatatttcaatttcggctaaattcacttgttcaggtctgttttccttctcgatttcggaaattcaactttgtttg  5195800                                                                     <---------ANAC46                                                            <---------ANAC58                      <--                                                            <---------ANAC58                      ---                                                         <-----------GT1       --------->MYB52(2) <--                                 --------->MYB52(2) <---------AHL20(2)       <---------MYB52(1)<-----                                <-------TEIL      <----------DOF2    <---------ANAC58          ------ ----MYB46(3)          <----------DOF2    <---------At4g35610        <---------ANAC58         -------   ttagcaaatcgaattgtctattcttcttttggggttcgtttttcagcgttctcttttattttccgtctctgtcttgttcgtaagttgatttcgctattaa  5195900                                                                                         <---------YAB1                                                                                     <---------ANAC58                                                                                     <---------ANAC46                                                                                     <---------ANAC58        <---------AHL20(2)                                                        <---------WOX13(1) -------AHL20(1)                                                                --------->ATHB12 ------>AHL20(2)                                                                <---------ICU4 -------AHL20(2)                                 <-----------RAV1(1)           --------->ICU4 ----AHL20(2)          <---------ZAT6 --------->YAB1                     --------->ARR14(2) --->AHL20(2)        <---------At5g28300        <---------TOE2(3)        <---------ARR14(2)         - -->AHL20(2)        <-----------GT1 <-----------HVH21      ---------->DOF2     <---------YAB1   <----   aaaatttgatttttttttggttttactgttcattttccagtcatagggtttatgttggagagaaaggctaatgcgaaactgatgattgcttgtgatttga  5196000                           --------->ARR11(3)           --------->HSFB2a(1)           --------->HSFC1(2)                                           <---------ZAT14     <--------           <---------HSFB2a(1)                                          --------->ZAT18     ---------           <---------HSFC1(2)                                       <----------DOF2         ---------      <---------HSFB2a(2)  <---------ARR11(3)                  <--------P           --------->GLK1(2)      --------->HSFB2a(2)----------->ARR10                   <---------ZAT6        <---------ARR14(2) ---------->GT1      --------->ATHB12                       <---------TOE2(3)      --------->ARR14(2) -----TOE2(3)--------->GLK1(2)                              <---------TOE1(3)      <---------GLK1(2)   gattgttactagaagtttctgtttgattagattttagttttcaattcttcaattttggttttagggttagcttttgcactgtccagattctaaatttttt  5196100                                                                          ----------->GT1   ---------                                                                <---------TOE1(3)           <--------                                            --------->ANAC46    <---------TOE2(3)         --------->MYB46(3)                                            --------->ANAC58   <-----------RAV1(2)       ------->TEIL                                            --------->ANAC58 <-----------GT1      --------->RVE1(1)         <-----------GT1                 --------->TOE1(2)<---------AHL20(2)     --------->ARR11(3) -AHL20(2)                           <---------GLK1(1)   <---------AHL20(2)      <---------ARR11(3) >AHL20(1)                           --------->GLK1(1)   <---------AHL20(1)      --------->GLK1(2) >AHL20(2)                    <-----------RAV1(1)        --------->AHL20(2)     --------->RVE1(1)   aagtttctaattttcgattctacattgtttccctgttggatttcatacgaaagtttcaatttttttcaggttaactcagtaaaaatctctgaaccgctga  5196200  Previous    Next  AGI:  At5g15910.1    Description:  dehydrogenase-related. similar to binding / catalytic/ coenzyme binding [Arabidopsis thaliana] (TAIR:AT5G10730.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96868.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040) Range:  from: 5193114    to: 5195399    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g15920.1    Description:  structural maintenance of chromosomes (SMC) family protein (MSS2). similar to MIM (HYPERSENSITIVE TO MMS, IRRADIATION AND MMC), ATP binding [Arabidopsis thaliana] (TAIR:AT5G61460.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40770.1); similar to SMC5 protein [Oryza sativa] (GB:CAD59412.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ54995.1); contains InterPro domain RecF/RecN/SMC protein, N-terminal; (InterPro:IPR003395) Range:  from: 5195686    to: 5199562    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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