Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                        ----------->HVH21                      --------->ALFIN1 ---------ANAC46    --------->At4g35610                 <---------ANAC46 -------ANAC46    <-----------RAV1(2)         --------->GLK1(1) -----ZAT14    <---------ZAT14        --------->At4g35610 --->ALFIN1    ----------->HVH21      <---------ZAT2   --------->ALFIN1 --ANAC46      --------->ZAT14        ----------->RAV1(2)    <---------ANAC46                <------- --ANAC58     <-----------HVH21       --------->ZAT2   <---------AtMYB61                    --------- --ANAC58--------->TCP20              <---------At4g35610 --------->ALFIN1                 <---------GLK1(2) >ATHB12 <---------PCF2    <------ZmHOX2a(1)  <---------GLK1(1)<---------ANAC46--------->ATHB12    --   gagcgggaatgggaccgttcacaggtgaaggactctgatcagctgaagaattccgatgtggtggagcgggaacgggactattcatgggtgaaggaatctg  5189000                                               --------->ARR14(2)        --------->ARR14(2)                        <---------TOE2(3)      <---------ARR14(2)        --------->GLK1(2)               <---------MYB52(1)       <------MYB46(1)                  <---------ARR14(2)         <---------GLK1(1)              <------MYB83        <---------ANAC58        <---------ARR11(3)          <---------MYB46(3)      <---------ANAC58        --------->ARR11(3)         ------>ZmHOX2a(2)     <----------DOF2<---------GLK1(1) --At4g35610  <-------GAMYB        ==================HOX2a_HOX2a       <------ZmHOX2a(1) >GLK1(2)--------->GLK1(1)     <---------YAB1 <------ZmHOX2a(1)<---------TOE1(2)  ---------->DOF2 ---->ZmHOX2a(2)      ---------->DOF2 <--------P     <---------PCF2  <---------TOE2(3)   atcgaatgaagaactccgttgtcttaaaggtatatgatcggttggagaggaaatgggacctttcttgggtttaggaatccgatggaaagaagacttccga  5189100                       <---------ANAC58                       <---------bZIP60(2)                       <---------ANAC58                       <---------ANAC46                       --------->O2                       <---------TGA1a                      <-----------------------TaNAC69(2)                      <------NtERF2                    <---------DEAR3(1)                    --------->ALFIN1                  <---------ANAC58                                                            -------                  <---------ANAC58                                                     <---------ANAC55(2)                 <------MYB46(1)                                                       <---------ANAC55(1)                 <------MYB83                                                          <---------TGA1a               <--------P                                                              <---------O2               ==================MYC_MYB               <---------At4g35610             --------->O2           --------->SPL7                            <---------GLK1(2)                 --------->TGA1a         <---------SPL7<---------O2            --------->ALFIN1                        <---------ANAC46        <---------ANAC46            --------->MYB46(3)--------->GLK1(2)                ==============        <---------ANAC58 --------->ALFIN1      ----------->HVH21                       <---------ANAC58        <---------ANAC58 <------NtERF2    <---------LBD16                              <---------ANAC58   tgttttgaaggcgtatggtagggtggcgtgggaatggaaccattcacgggtgaaggaatctgatttgatgaagaattcaaatgactgagacgtgtatgat  5189200                                    ------>ZmHOX2a(2)                 --------->ATHB12   ===============================HOX2a_HOX2a     ---------->DOF2              <---------ARR14(2)        <------ZmHOX2a(1)  <---------HSFB2a(2)       --------->ATHB12          --------->DAG2             <----------ID1 -->YAB1       <---------WOX13(1) --------->ARR14(2) ---------->DOF2     <------ZmHOX2a(1)      <---- ===============bZIP_DOF   <---------YAB1     ----------->GT1           <----------ID1       <-------   cagtctcgaaagatgagattgatggaggtaagattggatcggcaaggagagtatataaagcaggaactattgtgaggacaaatagaacaaatgctaatgt  5189300                                                       <----------DOF2                                                     --------->At4g35610                                           >>>>>>>>>>>>>>>>>LFY                                   <--                                         --------->At4g35610 ------------>CBF               ------->TEIL -----AHL20(2)          <------ZmHOX2a(1)<---------At4g35610<<<<<<<<<<<<<<<<<LFY   --------->ICU4<--- --TOE2(3)       <----------DOF2  ---------->DOF2    <---------At4g35610         --------->YAB1 -----   aattgcaactcttggtgttctttgaaggattgcaaacaaaggaagctccattgtctgcttcaagacaatggtgtctggtcttgtcataaatatgtatgta  5189400                                                                        --------->AHL20(2)                                                                        <---------AHL20(2)                                                                       --------->AHL20(2)                                                                    <---------AHL20(2)                                                                    <---------YAB1                     ------->PIF5                            --------->LBD16                     <-------PIF5                            ------>ZmHOX2a(1)                 <---------At4g35610                       <---------LBD16     ----------->RAV1(2)         --------->YAB1      ------------>CBF      <-----------GT1 --------->AHL20(1)  ----------->GT1<---------ZAT2                   --------->WRKY38(1)--------->YAB1 -------ARR14(2) --------->At4g35610              --------->WRKY12 <---------AHL20(1)          ------ --------TBP   <---------ZAT18   <---------ATHB12 ----------->HVH21--------->AHL20(2)        -------- -->TEIL <---------ICU4 <-----------HVH21   ----------->RAV1(1)   --------->YAB1  --------->MYB52(1)   tatatggtgaataatggtgagctcgtggtcatccaataactaggcacaacatttgaccatttcctgaaatataataaataaacctgagggagacagaaag  5189500                           <------ZmHOX2a(1)               <----------DOF2                        <---------ICU4                     ------>ZmHOX2a(1)                       --------->ICU4                     --------->TOE2(3)                       <--                  <------MYB46(1)                      --------->ARR14(2)               <------NtERF2                  <------MYB83----------->RAV1(1)      --------->GLK1(2)               --------->ANAC58 ----->GT1     <---------ANAC58                 ------>NtERF2  ---------->ID1          --------->ANAC58 -->DOF2       <---------ANAC58      <-----------GT1   <---------ARR14(2)  <----------DOF2       ----   tcaaaaaacttgatttagcttggtcattaggacaacatttttcgaacttgcgccaagaatcctttgtcttcttctctctttagcatagccagcaagaagt  5189600                                                                                                    <                                                                                                    <                                 --------->ZAT14                                                  <--                           ----------->RAV1(1)                                              ---------                        --------->ANAC58                                                  <---------ANAC58                        --------->ANAC58                                                  <---------ANAC58         <---------ETT(2)  <<<<<<<<<<<<<<<<<LFY                                       <---------ANAC58         --------->ETT(2)--------->MYB46(3)            <<<<<<<<<<<<<<<<<LFY        <---------RAP2.6(2)  <---------TOE1(3)  --------->WRKY18(1)              ----------->HVH21        <---------SPL7    <---  <---------TOE2(3)--------->LBD16        <---------MYB46(3)       --------->HSFB2a(2)<---------ANAC46 ----------CBF <------ZmHOX2a(1) <---------ZAT14    <---------O2   <---------HSFB2a(2)<---------ANAC58 ----->ATHB12 ----------->HVH21  <---------ZAT18    --------->O2  <---------LBD16 <---------At4g35610   cattgaggttgtcgataggaccgggcaagcaccagtggacacagtcgttgtacaacgtgacattggcctctggaatatggccgtagcggcttgggtgacc  5189700                           <---------ARR14(2)                           <---------ARR11(1)                 <---------ANAC46       --------->ANAC58    ------->TEIL       --------->ANAC58    --------->ARR14(2)       --------->ANAC46   <---------CCA1(2)  <-----------ARR10       <---------ARR14(1) ---------MYB46(3)      <---------ANAC58 ---------DEAR3(2)      <---------ANAC58                <<<<<<<<<TBF1    <---------At4g35610 -------MYB52(1) <---------ANAC58              ---------->ID1            --------->At4g35610     ---- -->HVH21 ----------->RAV1(1)              <---------DAG2                --------->ZAT2         <---- --------HVH21   <---------ANAC58    --------->YAB1<----------DOF2 <<<<<<<<<TBF1              -------   gtcgggtctaagccacatagcttgggtcgtatctagtaatcgtaaccttttccctttcttcttcgcttcttcttcagctctccaaaattcttccaactga  5189800                                                                                         ------>NtERF2                                                                                        --------->ANAC58                                                                                        --------->ANAC46                      <---------ANAC58                                                 ------->GAMYB                      <---------ANAC58                    ------>ZmHOX2a(1)          -------->P                   <---------MYB52(1)                    --------->TOE2(3)          <---------ALFIN1                 <---------ANAC58              <---------TOE1(3)                   <---------ALFIN1 --->TEIL  --------->ATHB12                    <---------TOE2(3)                   --------->MYB46(3) -----GLK1(2)    <---------ANAC58<---------YAB1--------->DAG2             ------>ZmHOX2a(1) >GAMYB   <-------TEIL<---------ANAC46     ------>ZmHOX2a(1)           ------>ZmHOX2a(1)--------->ANAC58   atcttgtgtagcttcattgtcgtttcgtcttgagtctcattgctcctataaggttgtttcctcaaacaatctcctccttcattccacaacccgccttcaa  5189900  Previous    Next  AGI:  At5g15890.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G15900.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96865.1); contains InterPro domain Protein of unknown function DUF231, plant (InterPro:IPR004253) Range:  from: 5187590    to: 5189351    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g15900.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G15890.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO49265.1); contains InterPro domain Protein of unknown function DUF231, plant (InterPro:IPR004253) Range:  from: 5189494    to: 5192073    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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