Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                      --------->At4g35610                    <------NtERF2                    <---------At4g35610                    --------->ATERF1(1)                    <---------ZAT2                    <-------GAMYB                   ------>NtERF2                   <---------RAP2.3(1)                   <---------ATERF1(1)                   <---------ERF1                  <---------RAP2.6(2)                  <---------RAP2.3(3)                  <---------RAP2.3(2)                  --------->ATERF1(2)              <-----------RAV1(2)             --------->ABI4(2)             <---------ZAT14            --------->ALFIN1      <---------ZAT14   <---------ARR14(2)                                          --------->ARR11(3)      <---------REM1(2) --------->ARR14(2)                                         <---------At4g35610      --------->ZAT14 ----------->HVH21                                          <-----------RAV1(2) <------NtERF2--------->ATERF1(1) <-----------HVH21                             --------->LBD16 -------->LBD16   <---------DEAR3(1)                                          <------------AtMYB77 ------->ANAC46   <---------ATERF1(2)                --------->ARR14(2)       --------->MYB46(3) ------->ANAC58  --------->ATERF1(1)      <---------ANAC58                   <---------At5g28300 ------->ANAC58 <---------ATERF1(1)       <---------ANAC58                   -------->P <---------REM1(1) -------LBD16--------->ZAT14      ------->TEIL       <---------ARR14(2)     --------->MYB52(1) >GLK1(2)--------->ANAC46 ------>ZmHOX2a(2)    --------->ZAT18  <----------DOF2------->GAMYB   cccggcagtacacggtgcaggcggctgatcggcatgtatcacaggcttgtgcccagttactctctactttcaacatactaaccgcagatgttgtagttgt  5177500                             <-----------RAV1(2)                            <------NtERF2                            <---------ZAT2                            --------->At4g35610                            --------->ZAT2                            <---------At4g35610                           ----------->RAV1(1)                     ---------->DOF2                 <---------TOE2(2)                 <---------TOE1(2)              ------>ZmHOX2a(2)                                        ==============================             <------ZmHOX2a(2)                                         ---------->DOF2            ---            <---------ARR11(3)   <---------ZAT18            <---------AtLEC2         <---------GLK1(1)            --------->ARR11(3) --------->At4g35610     <---------MYB46(3)      <------ZmHOX2a(1) ----   ttgatggtgagtgagatcgtatgtaaaggcagcaggggactaagaaggctatattagttgttgaatggaaatggaaaggaaggatagaattctgagggct  5177600       <---------ANAC58       <---------ANAC46       <---------ANAC58      <------NtERF2    --------->ALFIN1   -------->ABF1   <-------MYC3   <-------MYC4   ------->MYC4   ------->PIF5   ------->MYC2   ------->MYC3   <-------MYC2   <-------PIF5  <---------bZIP60(2)  <---------TGA1a  --------->TGA1a  <---------O2  --------->ANAC55(2)  <---------ANAC55(2)  --------->O2  >>>>>>>>>>ABI5  >>>>>>>>>>HY5  >>>>>>>>>>AtMYC2                                                                    <---------ANAC58 ------------>OsbHLH66          <---------ANAC58<---------ANAC46                      <---------ANAC58 ===========bZIP_DOF            <---------ANAC46<---------ANAC58             --------->ZAT14 -------------->PIF3(1)         <---------ANAC58<---------ANAC58             <---------ZAT14  <------ ------->HVH21            <---------TOE2(3)<-----------RAV1(1)          <---------ZAT14       -------   ggacacgtggcgagaagtttgtgggtttgatgttgagtgatcatcttgtggctggctgagtttttgagaaggggtccagtgcagagatgcttacagcttt  5177700              --------->ANAC46              --------->ANAC58              --------->ANAC58           --------->ZAT2        --------->MYB46(3)       -------->P                                                            <-----------GT1      --------->WOX13(1)                                                  ----------->GT1     --------->MYB46(3)                                              <------NtERF2 <---------DAG2  --------->YAB1                                                    ------>NtERF2  <----------DOF2 --------->ICU4              ----------->GT1          <---------ARR11(3)  <---------ICU4            - ----DOF2------->GAMYB     ---------->DOF2            --------->ARR11(3)  --------->YAB1<-----------GT1 -------------->WRI1   ---------->DOF2               <---------CCA1(2)   <---------ATHB12    <-------   ggaatcatcaaccagcacgaaatgtgaaagaaagaaaaaaactaattgtcttcttatatctttgcaatggcaccaatagttactactttttctctctttc  5177800                                                                          <-------MYC3                                                                          ------->MYC2                                                                          <-------MYC2                                                                          ------->MYC3                                                                          --------->TOE1(2)                                                                         <---------ANAC58                                                                         <---------ANAC58                                                              <---------TOE2(2)                                                     <-------MYC3       <-----------------------TaNAC69(2)                                                     ------->MYC3   <---------HSFB2a(2) ------>ZmHOX2a(1)        <---------TOE1(2)  --------->MYB46(3)     --------->HSFB2a(2) -------->TOE2(3)        ------>ZmHOX2a(1) --------->PCF2     <---------TOE1(2)           <---------YAB1 ---DOF2       <---------ALFIN1           <------ZmHOX2a(1) --------->TOE2(2)        <-----------GT1*TSS   ttcctcaataagtgtaaacacctcttcctatgtaatcttctataggacccatccacatgttacctaggttctgaaacgtgcaacttctaactatttttgt  5177900                                                                                   <----------DOF2                                                      <---------MYB52(1)  <---------GLK1(2)                   --------->DAG2                <---------WRKY18(1)    <---------YAB1                  ---------->DOF2             <---------ANAC58        --------->YAB1              --------->MYB59            <----------DOF2            --------->ARR11(3)         --------------->AGL15--------->TOE2(3) ----------->HVH21  <---------CCA1(2)               <-       <-----------------AG   <----------DOF2 <---------ANAC58 --------->ICU4--------->TOE2(3)   <---   atcatctactactattttggtaaagctggaaactttagtagctctttggcttgaccattagcctaatgtttatcttgattcttaacttttgccatgttct  5178000                                             <---------AHL20(2)                                      --------->YAB1                                   --------->YAB1<---------ICU4                                   --------->AHL20(2)                                  <---------ATHB51                              ------------>CBF   --------->YAB1     <---------TOE1(3)    <---------ICU4    --------->AHL20(2)               <---------ICU4     <---------TOE2(3)    --------->ATHB12  <---------AHL20(2)             <---------GLK1(2)    <-----------RAV1(2)  <---------YAB1 --------->ICU4                     --------->ARR11(3) -----------AtMYB77      --------->ICU4<---------AHL20(2)      <------------CBF<---------YAB1   XXXXX --------GT1           --------->YAB1<---------YAB1<---------YAB1----------->GT1       <-----------GT1   aactgttcaggtttctctcatcgtctcatgatttcaattataaaaattaaatgatcactgtttagcattgttaaaaagattatgactcttaaccatttgt  5178100                                                                                               <-----                                                                  <----------DOF2           ---------                                                              ------>ZmHOX2a(1)            --------->WRKY18(1)                     <----------DOF2                         <---------MYB59              <----------               <------MYB83                            <---------ANAC58                   <--------ZAP1               <------MYB46(1)                    --------->CCA1(2)                      <------MYB83          <---------YAB1                         --------->ARR11(1)                      <---------DEAR3(2)        --------->YAB1                           --------->ARR11(3)             --------->ANAC46       <---------ATHB12                          <---------ARR14(2)           <---------ALFIN1 <----- XXXXXXXXXXXXXXX>MIR4239          <-----------RAV1(1)  <---------ANAC58<-----------GT1   <------MYB46(1)   tatcttcgaatgatgctaggtgtcttttttggtgatatgttggagataatagatatggcatgtcctaactttgtttccttccacatcaagtcggtcaagc  5178200                    --------->TOE1(2)                  --------->CCA1(2)                  <------ZmHOX2a(2)                 --------->ARR11(3)                 <---------ARR11(3)         <---------O2                 <---------ARR14(2)         --------->bZIP60(2)                                 -----                 --------->ARR14(2)  <---------HSFB2a(1)                                        -----                 --------->AGP1      --------->HSFB2a(1)                                        <----                <---------GLK1(1)    <---------At4g35610                                       <-----      <---------WRKY12--------->ANAC46      --------->O2                                       <-----      <---------WRKY38(1)            --------->At4g35610                                      ------- ----ZAT2   --------->ALFIN1        --------->ARR14(2)                                        <------ ->DOF2   ------->GAMYB             --------->GLK1(2)                            <---------REM1(1)--- -HVH21--------->MYB52(1)           <---------ARR14(2)                 --------->PCF2        <------- ----At4g35610  --------->GLK1(1)  <---------GLK1(2)                  <------ZmHOX2a(1)      --------   tgatttggccaacggtggagatccaaggagccaattggaatctgccaagtcgctacgagtctctagagattaggagccacaagttgaagcaaatggtggg  5178300      <---------TOE2(3)      <---------TOE1(3) ---->TCP15(1) ---->TCP20 -----PCF2 -MYB83----------->GT1 -MYB46(1)                                                                      --------->YAB1 -->MYB55(2)                                                           --------->YAB1 ---MYB46(3)    <---------YAB1 <---------ICU4      <-----------GT1    <---------YAB1 -------------->AGL3----------->GT1     <---------AtMYB61         <---------ANAC58 --ANAC46      <---------TOE2(3)    --------->At4g35610           <---------ANAC58           <------- ->ALFIN1     --------->MYB52(1)    ----------->RAV1(2)           <---------ANAC46        <---------ICU4   tccaaattaaggtgaataacgatagttatatcaacatcacctgtggtctgtttatacaagtccaatttgcttatgatcaccatcatatttcatagttaca  5178400  Previous    Next  AGI:  At5g15845.1    Description:  other RNA Range:  from: 5173188    to: 5177892    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g15850.1    Description:  COL1 (CONSTANS-LIKE 1); transcription factor/ zinc ion binding. Identical to Zinc finger protein CONSTANS-LIKE 1 (COL1) [Arabidopsis Thaliana] (GB:O50055); similar to CO (CONSTANS), transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G15840.1); similar to COL1 protein [Brassica nigra] (GB:AAN09808.1); similar to COL1 protein [Brassica nigra] (GB:AAN09813.1); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315); contains InterPro domain Zinc finger, CONSTANS-type; (InterPro:IPR002926); contains InterPro domain CCT (InterPro:IPR010402) Range:  from: 5176094    to: 5177900    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g15853.1    Description:  unknown protein Range:  from: 5178110    to: 5178310    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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