Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                               ----------->GT1                                 =====================HOX2a_HOX2a   ----------->GT1                         --------->GLK1(2)             <---------GLK1(2)--------->AHL20(2)                         <-----------ARR10     ==========================HOX2a_HOX2a                        <---------GLK1(2)      <------ZmHOX2a(2)<---------TOE1(3)                     --------->YAB1          <---------At4g35610<---------TOE2(3)--------->AHL20(2)         <---------AHL20(2)      ------>ZmHOX2a(1) ---------->DOF2<------ZmHOX2a(1)   caacaatggattttttttttcattcagaatctatccttccaaactacagatcacaaagaaactcttaaggatgaaaaaatagtttaaatcaaaccctctt  5157200                                                     <---------ICU4                                                  <---------ICU4                                                  --------->YAB1                                                  <--------HAHB4             <---------At4g35610                 --------->ICU4             --------->At4g35610            --------->YAB1         --------->ANAC58                 --------->ANAC58                                 ----------         --------->ANAC58                 --------->ANAC58--------->ANAC55(2)         --------->AHL20(2)         --------->ANAC46        --------->At4g35610<---------YAB1                ----------->GT1        --------->WOX13(1)       <---------At4g35610--------->ICU4        <---------ARR14(2)       ---------->DOF2        <---------At4g35610<---------YAB1           --------->ARR14(2)  <---------AHL20(2)         --------->ANAC46  --------->YAB1  <----------ID1  <---------ALFIN1  --------->AHL20(2)    <-----------ARR10 --------->ANAC46<---------ANAC55(2) <---------REM1(2)     <   ggattaaaatcaagcagctcattgcaattctaagcagctactacaagcatcatcattatcacataacaacaaaacaaatccacacggtttaaatccaaaa  5157300         --------->ANAC58         --------->ANAC58         --------->ANAC46                                                               ------->TEIL       --------->ZAT6                                                     <---------ARR11(3)     <-----------GT1                                                      --------->ARR11(3)  --------->CCA1(2)                             --------->DAG2           <---------GLK1(1) <---------ARR11(3)                  --------->ATHB12       <---------LBD16     <---------ANAC55(2) ------->AG              --------->YAB1        ---------->DOF2           --------->GLK1(1)    ------- ------ZmHOX2a(1) --------->PCF2  ---------->DOF2          <---------ANAC46     --------->ANAC55(2)<-   caggatataacacgacatgggttccactcagaacatgaaagattgagcaaaaagttggattttgtggaatttcagaaatcttatgtaatgaacttgaaaa  5157400                                                                                           --------->LBD16                                                                                          --------->ANAC58                                                                                          --------->ANAC58                                                                                         <---------LBD16                                                                                      <---------ALFIN1                                                                                 ------->GAMYB                                                                                --------->MYB46(3)                                                                                <---------MYB55(2)                                                                               --------->At4g35610                                                                               <---------ZAT2                                                                               <---------At4g35610                                                                    --------->At4g35610--------->ARR14(2)                                                          <------NtERF2        --------->ZAT2                                                     --------->ALFIN1         <---------ALFIN1                                                     <---------AtMYB61  <---------ARR14(2)--------->ANAC46                                              --------->ZAT2------>NtERF2     --------->MYB52(1)    <-----------GT1         ---------->DOF2   --------->At4g35610---------->DOF2<------------AtMYB77 --->DOF2              ----------->GT1      <------ZmHOX2a(1)<------NtERF2   <---------ALFIN1 ---------DOF2     --------->At4g35610 <----------DOF2<---------MYB46(3)--------->ARR14(2)--------->ANAC55(1)   gctttattaccttctctgagaagcagcgataaaagcatcaactttaggagcagcgatggtggcaccaagaagcagagccccaactgccaaacccgcaact  5157500                                                                                     ------>ZmHOX2a(1)                                                                                    --------->TOE2(3)                                                                                 --------->ARR11(3)                                                                                --------->GLK1(1)                                                                                <---------GLK1(1)                                                                               --------->ARR11(3)                                                                              --------->YAB1       --------->DOF5.7(2)                                                   <---------YAB1<---------AHL20(2)      --------->TOE2(3)                                                    <---------ICU4 <---------AHL20(1)     ----------->GT1                                                       --------->YAB1 --------->AHL20(1)    <---------TOE2(3)                   <------------------------ANAC81   --------->ICU4  --------->AHL20(2)    <---------TOE1(3)          <---------DAG2                           --------->YAB1    <---------AHL20(2)  ----------->HVH21            <----------DOF2  *TSS                   <---------YAB1--------->LBD16   tcgtttgacgttaaactctgcatcgtcgtcttcctttttctcttctcttctctcgttccttcttcttaacttgatgataatgatatcctgaatttatttc  5157600                                                                  <---------ANAC46                                                  <-----------RAV1(2)                                               --------->At4g35610<---------ANAC58                                               <---------At4g35610<---------ANAC58                                           xxxxxxxxxxxxxxxx>smallRNA(s)                                          xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                          xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                          xxxxxxxxxxxxxxx>smallRNA(fl3)                                          xxxxxxxxxxxxxxxxx>smallRNA(se3)                                          xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                          xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                          xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                          *TSSxxxxxxxxxxxxxxx>smallRNA(le3)                                          xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                          xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                          xxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                          xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                          xxxxxxxxxxxxxxxx>smallRNA(s)                                          xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                          xxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                          xxxxxxxxxxxxxxxx>smallRNA(se3)                                          xxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                          xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                          xxxxxxxxxxxxxxxxx>smallRNA(si3)                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                          xxxxxxxxxxxxxxxx>smallRNA(i)                                          xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                          xxxxxxxxxxxxxxx>smallRNA(le3)                                          xxxxxxxxxxxxxxx>smallRNA(si3)                                          xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                          xxxxxxxxxxxxxxxx>smallRNA(fl3)                           --                                          xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                      <-                                          xxxxxxxxxxxxxxxxxx>smallRNA(si3)                       xxxx                                          xxxxxxxxxxxxxxx>smallRNA(se3)                          <---                                          xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                  xxxxxx                                          xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                  xxxxxxx                  <---------ARR14(2)      xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                  xxxxxxxx             <-----------GT1              xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)              xxxxxxxxxxx         --------->AHL20(2)               xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        <---------TOE2(2)         --------->AHL20(1)        --------->CCA1(2)       xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<-------TEIL         <---------AHL20(1)       --------->ARR14(2)   <------MYB83                      <---------TOE1(2)        <---------AHL20(2)    <-----------------AGL1   <------MYB46(1)                  <-----------RAV1(2)       --------->ICU4   <---------ARR11(3)xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        ----------->HVH21    <--------P --------->ANAC55(2)--------->ARR11(3)   <---------MYB46(3)           <-----------HVH21  ----------->GT1 --------->ARR11(3)    <---------ANAC46<-------GAMYB             xxxxxxxxxxxxxxxxxxx ----------->GT1 <---------CCA1(2)<---------ARR14(2) <---------MYB52(1)           xxxxxxxxxxxxxxx>smallRNA(se3)   aaacgggtaaatattttacatatctagagcttatcagatatggcctattagctcagttggttagagcgtcgtgctaataacgcgaaggtcacaggttcga  5157700             <---------DAG2             <----------DOF2         <---------ZAT18                                       <---------YAB1       --------->ANAC46              --------->AHL20(2)  <---------ARR11(3)    --------->ARR14(2)               <---------AHL20(2)  <---------ARR11(1) --------------->AGL1                <--------ATHB1      --------->ARR14(2) ----------------AGL1                <---------ICU4      ------->TEIL xxxxxxxxxxxx>smallRNA(s)            --------->ATHB51   <---------CCA1(2)                      <----- ---ZmHOX2a(2)                      --------->ICU4      <---------ARR14(1)                    <------ xxxxxxxxxx>smallRNA(s)           --------->YAB1       --------->LBD16                        ------- xxxxxxxxx>smallRNA(s)          --------->AHL20(2) -------->ZAP1       ------------>CBF   --------->AHL20(2) xxxxxxxx>smallRNA(s)         <----------DOF2    <-----------GT1     <-----------GT1   ----------->GT1 xxxxx>smallRNA(se3)    ---------->ID1        <---------ICU4<----------DOF2          ---------->DOF2 xxxxxxx>smallRNA(fl3) <-----------GT1   ------------>CBF<---------ARR14(2)    <---------CCA1(2)   tccctgtataggccacttttttgtttttccttcttttaataatttcaattttgaccccgtatcttttgatttcaccaatttgtatcccaaagttaaataa  5157800                                                                           <----------DOF2                                                                    --------->ANAC58                                                                    --------->ANAC58                                               <---------MYB52(1)  --------->SPL7                                               <<<<<<<<<MYB98      --------->SPL1(2)                                              <-------GAMYB        --------->RAP2.6(3)                                       --------->ARR14(2)         <---------SPL1(1)     <-----------GT1                   --------->ZAT14            --------->SPL1(1) ------->TEIL                          <---------ARR14(2)        <---------SPL7 ----AHL20(2)                          <---------ZAT14         --------------->AtSPL3 ---AHL20(2)                <-----------GT1   <-----------HVH21<---------------AtSPL3<-----------GT1 -->AHL20(2)          ----------->GT1  <---------ZAT18        <------------------SPL14   <----------DOF2   atgaatttctccaaacgatttgtagggtttaaacaacttagtatactccgttactcgcttccaaacccgtacggcctctttagagtttcacctttgtgtc  5157900                                                                                      --------->ARR11(3)                                                                                      <---------ARR11(3)                                                                                     <---------CCA1(2)                                                                                 <-----------GT1             ---------->DOF2                                               <----------DOF2          ----------->RAV1(1) ----------->GT1  --------->ANAC46         <---------ARR11(3)      <----   tctctgaaactgcaacaaagcttgaagcgatagggtttattcaagcttcactcaaaccagtcgctaaatttcgacatctttattcacatatctatagatt  5158000                                     <------MYB46(1)                         <---------ARR14(2)                                     <------MYB83                  ---------->DOF2                                   <--------P                     ------>ZmHOX2a(1)                               <---------ANAC46                   ==========================HOX2a_HOX2a                               <---------ANAC58              --------->At4g35610     <------ZmHOX2a(2)                               <---------ANAC58              <---------At4g35610    --------->ARR11(3)                              <-------TEIL                ==================================HOX2a_HOX2a                            <---------ARR14(2)            ------>ZmHOX2a(1)  --------->GLK1(2)  <----------DOF2           --------->ARR14(2)        --------->ARR14(2)     --------->ARR14(2) ---TEIL   <-----------GT1  <---------GLK1(2)         <---------ARR14(2)    <---------GLK1(2)   -----   caagctttgtgatttgccattcgggtttcagattcgtgttggtaattcaatttctgaatcctctgctcctaaagagaagaatctgagatcagcaatggaa  5158100  Previous    Next  AGI:  At5g15802.1    Description:  similar to hypothetical protein [Cleome spinosa] (GB:ABD96853.1) Range:  from: 5156352    to: 5157548    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g15805.1    Description:  pre-tRNA. tRNA-Ile (anticodon: AAT) Range:  from: 5157642    to: 5157715    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g15810.1    Description:  N2,N2-dimethylguanosine tRNA methyltransferase family protein. Identical to Probable N [Arabidopsis Thaliana] (GB:Q9LFU5); similar to RNA binding / tRNA (guanine-N2-)-methyltransferase [Arabidopsis thaliana] (TAIR:AT3G02320.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96899.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN65976.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96937.1); contains InterPro domain N2,N2-dimethylguanosine tRNA methyltransferase; (InterPro:IPR002905) Range:  from: 5157801    to: 5161361    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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