Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                      <---------MYB52(1)                   <-------GAMYB                   <---------At4g35610            <---------ANAC55(1)            <---------ANAC55(2)            <---------ANAC46            <---------ANAC58            --------->ANAC55(2)               --------->AGP1                    --------->TOE2(3)            <---------ANAC58                 --------->At4g35610                --------->TOE1(3)         <---------MYB52(1)                  <---------At4g35610      <----------DOF2       <-------- ---------DOF2    <---------MYB46(3)   ------>ZmHOX2a(1)          <---------CCA1(2)   <-----------GT1 ->TOE1(2) --------->MYB52(2)      --------->ARR14(2)     ------>ZmHOX2a(1)  <-----------GT1<--------   gctttgcaaacgttacttgtctgttgattttgttctctatcctcttcagctctactcttcctcttcccatttctttttgttaccttaatttccacttttt  5153800                                                                                             <-------                                                                                            ------>ZmHOX2a(2)                                                                                          --------->ARR11(3)                                                                                          <---------ARR11(3)                                                                                       ------>ZmHOX2a(2)                                                                                      --------->CCA1(2)                                                                                      <------ZmHOX2a(2)                                                                                     <-----------ARR10                                                                                     <---------AGP1                                                                                     --------->AGP1                                                                                     <---------ARR11(3)                                                                                     --------->ARR14(2)                                                                      <----------DOF2--------->ARR11(3)                                                                 <---------ARR14(2)  <---------ARR14(2)                                                                <---------CCA1(2)  ----------->ARR10                                                                <---------GLK1(1)---------->DOF2                                                              <------MYB83      <------ZmHOX2a(1)                               <<<<<<<<<GATA-1                <---------ANAC58  ===================HOX2a_HOX2a                    <---------ANAC55(2)                       <------MYB46(1)--------->At4g35610                    --------->ANAC55(2)      --------->ANAC46 <---------ANAC46  ==============HOX2a_HOX2a --DOF2    <---------ARR14(2) <-----------GT1--------->ANAC58 <---------ANAC58  =============HOX2a_HOX2a -DAG2--------->ANAC46   --------->ICU4      --------->ANAC58--------->MYB59 <---------At4g35610   atgtctatacacaaatatgggtatgtaatgtttatctatatacagacacacaaaaacataagttgggtatctctttttcagaggaaagatctgatctttt  5153900                                                                                                <----                                                                                                -----                                                                                             <------ZmHOX2a(1)                                                --------->TOE1(3)                           ---------                                                --------->TOE2(3)                    >>>>>>>>>TBF1                                             <-----------GT1                   <---------TOE1(3)<----             ----------->GT1        ---------->DOF2               --------->DAG2 <------ZmHOX2a(1) ---DOF2    <---------HSFB2a(2)----------->GT1 --------->ZAT6   ---------->DOF2<---------TOE2(3)-----   tgagtttttatggtctggagaattgatggtatttggaaaaaagaaattaaccctaatttcaagaacaaaaggtactagcttaaggaagaagaagaggaaa  5154000                                                                                    <---------ARR11(3)                                                                                    --------->ARR11(3)                                                                              ----------->GT1                                                                            <-------GAMYB   <---------MYB52(1)                              --------->AHL20(2)      <---------MYB46(3) -----HSFC1(2)                                   <----------DOF2          <---------AtMYB61 ---->HSFB2a(1)                              ------>ZmHOX2a(1)       --------->ALFIN1 --------->YAB1 -->GT1              <---------AHL20(2)   <-----------GT1          --------->ALFIN1--------->GLK1(1) -----HSFB2a(1)  <---------AHL20(2)   <----------DOF2    <---------YAB1--------->ALFIN1     --------- ---->HSFC1(2)  <---------AHL20(2)<---------GLK1(2)<---------AHL20(2)<---------ANAC46 --------->TOE2(3)   cttctgtttgtctgattttttatttatagggttattgattctttttcctctctttaattgtgtttggaagtgtgtggaggttgtgaaatcttaatgaaaa  5154100                                                                             <-----------GT1                                                                     <---------ANAC58                                                                     <---------ANAC46                                                                   <------MYB46(1)                                                                   <------MYB83                                                                   <---------ANAC58                                                                   <---------ANAC58                                                                   <---------ANAC46                                                                  <---------MYB46(3)                                                                  <---------AtMYB61                                             --------->ALFIN1     --------->MYB111(1)                                      --------->ANAC58            --------->MYB46(2)                                      --------->ANAC58       <---------TOE2(3)                                    --------->CCA1(2)    *TSS<---------TOE1(3)                     <- >YAB1    --------->ATHB12     ---------->DOF2       --------->ALFIN1<---------ANAC58       <--------   ttttgttttgaatcaatggaatctattgagagcaaaagataagaaatgtgtgagggtgaggttagggtttggtgtgttttctcatttctagcccatctct  5154200                                                 ----------->HVH21                                              ------->MYC4                                              <-------MYC4                                              ------->PIF5                                              <-------PIF5                                              ------->MYC2                                              ------->MYC3                                              ------->PIF4                                             --------->O2                                             <---------O2                                             --------->TGA1a                                             <---------TGA1a                                             <---------ANAC55(2)    <---------WOX13(1)                                             --------->ANAC55(2)  <--------ATHB1                                           <------------OsbHLH66  -------->HAHB4                                       ---------->DOF2            <---------ICU4                                       ================bZIP_DOF   --------->ATHB12                                     ==================bZIP_DOF   --------->ATHB51                              --------->ANAC58<-------PIF4       <---------ATHB12                              --------->ANAC58<-------MYC2       <---------AHL20(2)                            <---------ALFIN1------------>OsbHLH66--------->AHL20(2)                 -              <----------DOF2 --------->ANAC46<-------MYC3       <---------ATHB51             <------    <----------DOF2====================================bZIP_DOF  --------->ICU4               ------- --------At4g35610 <----------DOF2   <----------DOF2           ------>MYB46(1)             --------->WOX13(1) -CCA1(2)     =========================================bZIP_DOF------>MYB83   <---------YAB1 <-------   ctgcttctttattcttctttactttcattcccacgctctctttaagcacgtgtgatacagtcaccaaataattggctcttgtgatacaattaccaattaa  5154300                                                    <---------ANAC58                                                    <---------ANAC55(2)               <---------AHL20(2)                                                    --------->ANAC55(2)               --------->AHL20(2)                                                    <---------ANAC58             --------->ICU4                                       <---------YAB1    <----------DOF2    ----------->GT1                              ----------->GT1<---------ANAC58         <---------YAB1 --------->AHL20(2)      <---------AHL20(2)      <------ZmHOX2a(1)   <-----------GT1    ================================ ---------->GT1              ----------->GT1 <---------ANAC55(2)     --------------->AGL15 ---AHL20(2)                <---------TOE2(3)<---------ANAC46        <---------------AGL15 -->AHL20(2)              ---------->DOF2    <---------ANAC58       --------->YAB1--------->AHL20(2) --ATHB12                <---------AHL20(2)  --------->ANAC55(2)   <---------YAB1<---------YAB1 <----   acttgtatatatatgtttatatgttatttaaaggataaatttttatttcgtattacttactttagagttttcattatagggttattatttaatttgaaca  5154400                                                                      --------->ANAC46                                                   <---------------AGL15                                                   --------------->AGL15                                                  <-----------------AGL3                                          <---------ANAC58          <-----------GT1          <-------             <-----------RAV1(2)     <---------ARR14(2)           <---------AHL20(2)         <-------            ------>ZmHOX2a(1)   <---------ANAC46  <-----------------AGL2                     <------- ===================================================================MADS_MADS           --------->ATHB12 -----ARR11(3)            <---------YAB1  <---------ANAC58    --------->ICU4           <---------YAB1   tctatgtgtttctcctcaggtagaattcatgtttgtgtatatatgggtgtctactatttatggaatatttatacaaaacatctaaacatatcattgcttg  5154500                                                                                                  <--                                                                                                 <---                                                                                                 ====                                                                                                <----                                                                                               <-----                                                               <---------ZAT18              <--------                                                               --------->ZAT18           ------->MYC3                                                            --------->YAB1               ------->MYC2 --------->GLK1(2)<---------ICU4                         --------->YAB1                  <-------MYC2 --ANAC58        <---------YAB1                    --------->ZAT6                        <-------MYC3 --ANAC46      --------->YAB1          ----------->GT1----------->RAV1(1)              ------->TEIL-- --ANAC58     <---------YAB1      <---------YAB1 <-----------GT1                    --------->AtLEC2<   aaaattctatgtttatatcataatagcaaattgtttatgtttagttatatataacacaacaatagtactctaagaaaaacagcatcatgcacgtttgatg  5154600       <-----------GT1    ----------->GT1 -------WOX13(1) ----GAMYB        --------->O2                       ------->TEIL ===========================MYC_MYB              <-------MYC3 -----MYB46(3)    <---------O2            <---------WOX13(1)<-----------GT1 ----YAB1         <---------TGA1a     <---------MYB52(1)   <---------ARR14(2) -MYB46(3)        --------->TGA1a    --------->At4g35610   --------->ARR14(2) ------->WRKY38(1)--------->ANAC46   <---------At4g35610 ------->TEIL        <-----------GT1  ------- ---------WRKY18(1)         <---------TOE2(3)    ------->MYC3      <----------DOF2          ---------   gttgactagtaactagacacacgaggcacaaaggttatcagttgattaacatgtgtatgtatatacggtctttcacttatcacattacaaacttgaaagt  5154700  Previous    Next  AGI:  At5g15800.1    Description:  SEP1 (SEPALLATA1); DNA binding / transcription factor. Identical to Developmental protein SEPALLATA 1 (SEP1) [Arabidopsis Thaliana] (GB:P29382;GB:Q9LFU6); similar to SEP2 (SEPALLATA2), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G02310.1); similar to SEPALLATA1 [Arabidopsis lyrata subsp. petraea] (GB:AAU82008.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487) Range:  from: 5151337    to: 5154157    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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