Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                     <---------ICU4                                                                                  --------->ICU4                                                                                <---------ICU4                                                                                --------->YAB1                                                                               <---------YAB1                                                                               --------->ICU4                                                                             <---------ICU4                                                                            <---------YAB1                                                                          --------->YAB1                                                                          <---------ICU4                                         <---------ANAC46                <---------YAB1                                  --------->AHL20(2)                   --------->YAB1     --------->YAB1               <---------AHL20(2)                --------->YAB1<---------YAB1     <---------ICU4             <---------YAB1                     <------ZmHOX2a(2)    <---------YAB1             --------->TOE2(3)                  <---------ARR11(3)    --------->ICU4            --------->YAB1                      --------->ARR11(3)    <---------ATHB12         <---------ATHB12         --------->ANAC58 <---------ICU4   ------->TEIL ----------------->WRI1      <---------YAB1           --------->ANAC58<---------YAB1 <---------YAB1 >ZmHOX2a(1)   ----------->GT1<--------HAHB4<---------ARR14(2)---------->DOF2--------->YAB1   tgtgtaatcatcgaaactcgaaaaaacttctatcattaaaatggcgaattcaaaacaagaaaacaaaagatcatcatcatcatcatgatgaacgtttaat  5144100                                                                                              -------                                                                                              -------                                                                                              -------                                                                  --------->ANAC46      ---------->DOF2                                                       <----------DOF2--------->ZAT14<---------DAG2                           <-----------GT1         <---------ZAT18--------->ZAT6     --------->TOE2(3)                       --------->AHL20(2)   <---------YAB1      <---------ALFIN1  <-----------GT1   cgaagtacttagacatttgaatcgatttattactcatcccacatttctcatagaacactttgttctccacactacaatctagaatcaccttatagcaacc  5144200                                                       --------->ANAC58                                                       --------->ANAC58                                                       --------->ANAC46                                                      --------->LBD16                                                     --------->ANAC46  --------->ANAC46                                            <---------ZAT2         <<<<<<<<<GATA-4                                            --------->ZAT2         <<<<<<<<<GATA-2                                            <---------At4g35610    <<<<<<<<<GATA-3                  <                   --------->ANAC58         --------->At4g35610   --------->ARR14(2)               <-              ------>ZmHOX2a(2)           <---------ALFIN1   --------->TOE2(3)                  <---- --------->ATHB12  --------->ANAC58       <-----------RAV1(2)--------->TOE1(3)                  <---- ->P       --------->YAB1                --------->LBD16  <---------ARR14(2)                  ------- -->ANAC58--------->ICU4         <----------DOF2     --------->LBD16 --------->ANAC46         <------ -->ANAC58<---------ATHB12   --------->MYB46(3)     <---------LBD16<<<<<<<<<GATA-1       --------->ZAT18   cattgatttgcaatgatccataagaaactcaacaactttcttccccagctgtttcccgcgaaaccttgaatccacaacaacgtcttcaatgtgcccagct  5144300                                                                                          --------->ALFIN1                                                                                         ------->MYC2                                                                                         <-------MYC2                                                                                         ------->MYC3                                                                                         <-------MYC3                                                                                         <-------PIF5                                                                                         ------->PIF5                                                                                        <---------TGA1a                                                                                        --------->O2                                                                                        --------->ANAC55(2)                                                                                        <---------ANAC46                <---------HSFB2a(1)                                                     <---------ANAC55(2)                --------->HSFB2a(1)                                                     <---------O2      --------->ARR14(2)                                       --------->HSFB2a(1)      <---------bZIP60(2)      <---------ARR14(2)                                       <---------HSFB2a(1)      --------->TGA1a     --------->GLK1(1)                       <---------At4g35610                       ------------>OsbHLH66  --------->LBD16                            --------->ZAT2    <---------HSFC1(2)    <------ZmHOX2a(2) --------->ANAC46                            <---------ZAT2    --------->HSFC1(2)   --------->ARR11(3) ---------LBD16 --------->HSFC1(2)        --------->LBD16   --------->LBD16        --------->At4g35610 --------At5g28300                       --------->ANAC46  --------->LBD16     --------->ANAC46 ------DOF2     <---------HSFC1(2)    -------->P          --------->HSFB2a(2)  --------->ANAC58 -----DAG2    <---------GLK1(2)   --------->ZAT6          <---------HSFB2a(2)  --------->ANAC58 -->ZAT2  ------>ZmHOX2a(1)       --------->ANAC46       <---------LBD16    <------ZmHOX2a(2) ---ZAT2 --------->TOE2(3)   --------->YAB1  --------->At4g35610     <<<<<<<<<TBF1 <---------At4g35610   ttaccgcaattcctcagaaacttcttctctatcatcacactacccgtagcagcgatttttcccgaagtttcttcttcgatcacgcagatcacgtggtcgt  5144400                                                                    ----------->HVH21                                                                    --------->WRKY12                                                                  <-------GAMYB                                                                  <---------At4g35610                                                                  --------->At4g35610                                                                 <---------MYB46(3)                                                                 --------->MYB52(2)                                                                 --------->MYB46(2)                                                               <---------MYB52(1)                                                              --------->At5g28300                                                              <-------GAMYB                                                            <---------ANAC46                                                          ------------>AtMYB77                                                         ----------->HVH21                                                        <-----------HVH21                                                       --------->At4g35610                                                       --------->LBD16     ---------->DOF2            --------------------->WRI1               <---------LBD16--------->WRKY38(1)    ==========            --------->GLK1(1)                        ------>ZmHOX2a(2) -------->ZAP1       ==========        ------>ZmHOX2a(2)                          --------->ARR14(2)>>>>>>>>>>WRKY6       <---------       <------ZmHOX2a(2)                     <---------MYB52(1)<--------P--------->HSFB2a(2)      <---------ARR14(2)     <------ZmHOX2a(2)     <---------ARR14(2)>>>>>>>>>>WRKY11      ------>ZmHOX2a(1)      --------->ARR14(2)  --------->DEAR3(1)<-------GAMYB----------->TGA1<---------HSFB2a(2)    <----   --------->SPL7    --------->ARR14(2)    <---------MYB46(3)<---------MYB46(3)        ------->TEIL   caccatacgatctgatttcttcgaatcgccgatcgaattcttcgtctgttactgatccggtgacggttagttgacctagaagctcgatgaatccttttct  5144500                      <---------ARR14(2)                      <---------AGP1                      --------->ARR11(3)                      --------->ARR14(2)                      <---------ARR11(3)                     <---------ARR14(1)                     <---------CCA1(2)         ------>ZmHOX2a(2)        --------->GLK1(1)        <---------GLK1(1)        <------ZmHOX2a(2)       <---------ARR14(3)       --------->ARR14(3)       --------->ARR11(3)                                                                  <---------       <---------ARR14(2)                                                              <------ZmHOX2a(2)       <---------ARR11(3)                                                              --------->CCA1(2)       --------->ARR14(2)                                  --------->ICU4             <---------ARR14(2)      --------->GLK1(1) ------>ZmHOX2a(2)            ----------->GT1                  --------->ARR14(2) ===============HOX2a_HOX2a                        <------ZmHOX2a(2)                  --------->ARR11(3) ==============HOX2a_HOX2a                        <---------ARR14(2)                  <---------ARR11(3) -DOF2<---------GLK1(1)<------ZmHOX2a(2)          --------->ARR14(2)                  --------->AGP1 -----------AGL15 <---------LBD16   --------->ANAC46------>ZmHOX2a(2)         <-----------TBP   cttatcggagatctccagttttcggatcttgaatgtctcagccatagaatcagatcggataattttgaatttgagtttttttttataagatccagtcact  5144600                                                  --------------->AtSPL8                                                  <---------------AtSPL3                                                  <---------------AtSPL8                                                  --------->DAG2                         --------->GLK1(2)                                                  --------------->AtSPL3                 <---------ARR11(1)                                                 --------->DAG2                          --------->ARR14(2)                                                ---------->DOF2                          <---------ARR14(2)                                             <---------YAB1                              ------->TEIL             --------->YAB1                  <---------ANAC55(2)                        <---------CCA1(2)            <---------AHL20(2)               <----------ID1                             <---------GLK1(2)           --------->AHL20(1)           <---------ICU4        <----------DOF2  --------->DAG2           --------->AHL20(2)          <---------YAB1   --------->ICU4        ---------->DOF2 --HVH21   <---------AHL20(1)          --------->ICU4 <-------TEIL    ----------->GT1   <---------ARR14(1)   cactggaactgaatataatcacccatagaaaaacaaatgtgataattacgaaaaggtacttattcttttagatagttacaaaaagtttccgaatctctta  5144700                                        <---------REM1(1)                                       <---------TOE2(3)                                  <----------DOF2                                    <------------CBF                            <------------CBF                                        <---------AHL20(2)                          <---------AHL20(2)             ----------->GT1            --------->ATHB12-                         <---------AHL20(2)             ----------->GT1            <---------YAB1   - ----------->GT1         --------->AHL20(2)    ---------->DOF2              ------------>CBF        -   atgaagtcaaaatgggccatttgttttttaaattgacttttgatgtaacaaaagcagcaagataaaaactccatagtaaacaatatttattgaaatgaca  5144800                                                                   --------->ATHB12                                                                   --------->ATHB51          --------                                                                  <---------YAB1  <------ZmHOX2a(1) <                                       <---------AHL20(2)       --------->ANAC55(2)          <-------                                 ------------>CBF               <---------ANAC55(2)         =========                                <-----------GT1                <-----------------AG---------->DOF2  <                             ----------->GT1                   ======================================        ----------->GT1     --------->DAG2                     ====================================== -------->ANAC46           ---------->DOF2          <-------TEIL<---------------AGL15       <-------- -------->ANAC58       <------ZmHOX2a(1)---------->DOF2        <-----------------AGL1       <-------- -------->ANAC58      ----------->GT1 --------->AHL20(2)       <-----------------AGL3  <------ZmHOX2a(1)   acaagccaacaagtgaaaatgcagaggaaaaaagtaacaatttaaagcggatgatacatatagattacataattggaaatgtaaggaaaggattgctaat  5144900                                                                   --------->GLK1(1)    <---------MYB46(3)                                   <---------PCF2    <---------AtMYB61                                    --------->TCP20   <--------P                                 --------->LBD16 <------NtERF2  <-------GAMYB                              <---------LBD16 --------->LBD16 ------->AGL15                               --------->LBD16 <---------SPL7 ---------TOE2(3)            ---------->DOF2 --------->ANAC46<------NtERF2 --------AGL15           <------MYB46(1)    <---------LBD16 <---------DEAR3(1) =============================MADS_MADS  <---------GLK1(1) <---------LBD16          --------->TCP20 ---------TOE1(3)        <------MYB83    --------->GLK1(1) <------NtERF2            <---------PCF5 ========MADS_MADS       ----------->GT1<---------ARR14(2) --------->ATERF1(1)      <---------PCF2 ========MADS_MADS---------->DOF2       <---------GLK1(1)<---------PCF5 <---------LBD16 ---------AGL2--------------->AGL15     --------->ARR14(2)------>NtERF2 --------->LBD16 ---------AGL3<---------------AGL15<------ZmHOX2a(1)  --------->ALFIN1 <---------LBD16            <--   ttagggttgatggtgactagaaaaggaaggtgaaagaggagggattcccgggatgagaggggccggagggattccagggataagagggaccggagggatg  5145000  Previous    Next  AGI:  At5g15760.1    Description:  plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative. Identical to Plastid-specific 30S ribosomal protein 3-2, chloroplast precursor [Arabidopsis Thaliana] (GB:Q9LFV0); similar to plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative [Arabidopsis thaliana] (TAIR:AT1G68590.2); similar to plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative [Arabidopsis thaliana] (TAIR:AT1G68590.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96848.1); contains InterPro domain Ribosomal protein, PSRP-3/Ycf65; (InterPro:IPR006924) Range:  from: 5143056    to: 5144056    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g15770.1    Description:  ATGNA1 (ARABIDOPSIS THALIANA GLUCOSE-6-PHOSPHATE ACETYLTRANSFERASE 1); N-acetyltransferase/ glucosamine 6-phosphate N-acetyltransferase. similar to hypothetical protein [Cleome spinosa] (GB:ABD96849.1); contains InterPro domain Acyl-CoA N-acyltransferase (InterPro:IPR016181); contains InterPro domain GCN5-related N-acetyltransferase; (InterPro:IPR000182) Range:  from: 5144096    to: 5144545    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g15780.1    Description:  pollen Ole e 1 allergen and extensin family protein. similar to hypothetical protein [Cleome spinosa] (GB:ABD96850.1); contains InterPro domain Pollen Ole e 1 allergen and extensin (InterPro:IPR006041) Range:  from: 5144730    to: 5146406    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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