Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100              <---------ARR11(3)                         <-------TEIL            --------->ARR11(3)                        --------->ARR11(3)                    <--------           --------->HSFB2a(1)                      <---------HSFB2a(1)              <---------YAB1           <---------HSFB2a(1)                      --------->HSFB2a(1)            <---------ICU4 ------->ANAC46                                    --------->DAG2                 --------->ICU4 ------->ANAC58                 <-------TEIL   --------->ANAC46                   <---------YAB1<---- ------->ANAC58            <--------P          --------->ANAC58       <<<<<<<<<<<<<<<<<LFY  <-------- -------LBD16             <-------GAMYB        --------->ANAC58<---------ZAT14 <---------YAB1   <----   ctcggaacatggaagatttcatcacttgggttgattcatccaagattaaacgaaaggttcttgagtacaatgacacattggatgattatgacatgcttgc  5142700                                                  <---------ZAT14                                                  --------->ZAT14                                                  --------->ZAT18           ----------->GT1                    --------->DAG2      <---------TOE2(3)                ----------------->AGL3  <----------DOF2                    --------->ANAC58 -ANAC58  ----------->GT1            <----------ID1 -----ANAC58                         --------->ANAC58 -ANAC58<------ZmHOX2a(1)<---------TOE2(3)  ---------->DOF2                --------->MYB52(2) -----ANAC58     ---------->DOF2   ---------->DOF2<-------TEIL<---------YAB1   ttagctttgaggaagttaaaaaagactgatgttttgtaaaagccaaaaaaggttcactgctactactattgcagggtttgtttggatttttgaatatgca  5142800                                                                                   ------->TEIL                                                                            --------->AHL20(1)                                                                            --------->ARR11(3)                              <----------DOF2                               <---------AHL20(1)                         --------->YAB1                                ----------->GT1              -                   <----------DOF2                                     <---------YAB1            >>>>                 ---------->ID1             <---------AtLEC2           --------->AtLEC2        <-----   aatgtgctactattcccttgtctttaatcttactttcgatctatttgcaagaagaaacttgaaaacaaatgtcatgaaaatattgaatctaactcatatt  5142900                                                             <---------AHL20(2)                                                          -------->HAHB4                                                          --------->ATHB51                                                          -------->ATHB1                                                          <---------ICU4                                                          <---------AHL20(2)                                                          --------->YAB1                                                          <--------HAHB4                                                         <---------YAB1                                                         <---------ATHB12                                                         <---------ATHB51                                                --------->AHL20(2)                                            <---------AHL20(1)                                            --------->AHL20(1)                                      -                                            --------->AHL20(2)    <-----------GT1                   -                                            <---------AHL20(2)   ----------->HVH21                 <- -------->TOE2(3)                    ------->TEIL<---------AHL20(2)                               --- >>>>>>GATA-1         ----------->RAV1(1)--------->AHL20(2) <---------YAB1               <---------MYB52(1) ----YAB1            xxxxxxxxxxxxxxxxxx>smallRNA(fl3)    --------->ICU4       <-----------GT1     <--   atcgtcaaattgtataagttggagccacagaaatggatgaacataaaatattaaatctaattattatttgacacttcaaattacaaaacccgtttgattc  5143000           ----------->HVH21           <---------ETT(1)          --------->DEAR3(2)          --------->MYB46(3)                                                                   ------      ----------->HVH21                                                                      <-------      <---------ETT(1)                                                                       <-------     --------->DEAR3(2)                                                                      --------     --------->MYB46(3)                          --------->LBD16                             -------- <---------ETT(1)                               <---------LBD16       <---------ANAC58      ------->TEIL ----------->HVH21                         <----------DOF2            <---------ANAC58     <--------- ----->ZmHOX2a(2)                         <---------ANAC58      <---------AHL20(2)       --------->ANAC58 -------->DEAR3(2)                        <---------ANAC58     --------->AHL20(1)        --------->ANAC58 -----ZmHOX2a(2)               --------->TOE2(2)--------->LBD16--------->AHL20(2)        --------->ANAC46 ------>ARR14(2)            <---------ARR14(2) <---------LBD16 <---------AHL20(1)--------->HSFC1(2) -------ARR14(2)   ---------->DOF2      <-----------GT1 *TSS   <---------AHL20(2)<---------HSFC1(2)   gatccgacccgacccgaccagaaaatcgcaaaacctgtgtttttgctttccccggtctctcaaaataaaattgctcgcttagaagcttcaaacgcagctg  5143100          --------->ANAC58     <-------GAMYB    <---------MYB46(3)    <---------DEAR3(2)   <---------DREB2C(2)   <---------DEAR3(1)   <---------ANAC46   <---------RAP2.6(2)   <---------ANAC58                                           --------->ARR11(3)   <---------ANAC58                                           <---------ARR11(3)  <---------------------WRI1                                 --------->At4g35610 ----->HVH21                                               <---------GLK1(2) --At4g35610            <-----------------AGL3            <---------At4g35610                      -- --ZAT2   --------->AtLEC2                         <---------DAG2                     --------->ARR11(3) ->ZAT2   --------->ANAC46                      <---------ALFIN1                      <---------ARR11(3) ->At4g35610     --------->YAB1     <-------TEIL--------->REM1(1)                    <---------CCA1(2) --RAV1(2)--------->ANAC58  <----------DOF2 --------->At4g35610               <---------CCA1(2) <----   aaatggcggttcaagcaaatcagagtgcttcttttgggttcagaacagcttcaccttctcagaagctctcttcgaaacccatagctcatatctctctatc  5143200                                                                                                    -                                                                                                    <                                                                                                    <                                                                                                   --                                                                                             <-------                                                                                            ---------                                                                                            <--------                                                                                            <--------                                                                                            <--------                                                                                            ---------                                                                                            <--------                                    <-----------------AGL3                                 <---------KAN4(2)                                   --------->ZAT18                                         ----------                                   <---------ZAT18                                      --------->LBD16                                <---------ANAC58                                       --------->ANAC46                                <---------ANAC46                          ----------->RAV1(2)--------                                <---------ANAC58                      <---------ALFIN1 --------->ANAC55(2)   <---------At4g35610       <----------DOF2                   ------>NtERF2           <---------ANAC55(2)   --------->At4g35610 --------->AtMYB61                       --------->LBD16         --------->LBD16  ------->TEIL        --------->MYB46(3)                      <---------LBD16         <---------LBD16 ------->ANAC46   --------->HSFB2a(2)<---------------AGL15   <---------LBD16      --------->WOX13(1)< -----ETT(2)      <---------HSFB2a(2)<----------DOF2       --------->GLK1(2)------>ZmHOX2a(1)--------   gacgaagctcaaaccctcttctcgaccatcgctttcgtgctctacttggaatcagggtcaaattccggcgagacactcctgtatcaatcccggaatattc  5143300      <---------ALFIN1 --------->ARR14(2)                                    <---------ALFIN1 <-----------ARR10                                   --------->LBD16 <---------ARR14(2)                                 --------->ANAC58 -------->GLK1(1)                                   --------->ANAC46 ----------TaMYB80                                  --------->ANAC58 ---------GLK1(1)                               <---------GLK1(1) -------->TaMYB80                              --------->ARR14(2) --ARR14(2)                                    ------->TEIL >KAN4(1)                                      <-----------ARR10 -HSFC1(2)                               <---------ARR14(2) -HSFB2a(1)                              --------->ARR14(2) -KAN4(1)                               <---------GLK1(2) >HSFB2a(1)                          <---------HSFB2a(2) <---------O2       --------->TOE2(3) --TaMYB80                           --------->HSFB2a(2) --------->O2   --------->YAB1 >TaMYB80                  --------->YAB1--------->GLK1(2)    ---------->DOF2 ->ARR14(2)    --------->YAB1      --------->MYB52(1)------>NtERF2   --------->WOX13(1) ---------CCA1(2)<-----------GT1   -------->P <---------GLK1(2) --------->DAG2 ->KAN4(2)    <---------ATHB12   --------->MYB46(3)<---------LBD16<-----------HVH21   gcatatcccccctccaatcttaccttctctcatgaactaccagaatctgaatctccgccacttggaaaggtcagtcatcgtcaaaaaacttctcttggaa  5143400                                    <----------DOF2                                               <--      <-------GAMYB                <---------DAG2             ----------->GT1               <--------     ----------->GT1             ------>NtERF2       --------->ANAC58  ------>MYB83         ---------    <---------TOE2(3)   ---------->DOF2              --------->ANAC58  ------>MYB46(1)     --------->AHL20(2)   caaattggggttataagcttgttagacaaagttgcagcctttttttgtcatttgaacgaaaatgtggtaaaccaaatgtattgtctccatctatttaatt  5143500                            <-----------GT1                       <---------ZAT6          --------->ATHB12                       ----------->GT1      <---------ANAC58                --------->ZAT18             <---------ANAC58                <---------ZAT18        <-----------RAV1(1)               <---------ANAC58     <---------MYB52(1) -------TOE2(3)<---------ANAC58    <---------DAG2 -AHL20(2)   <---------ANAC46    ------>MYB46(1)           <----------DOF2 >AHL20(2)   --------->ALFIN1    ------>MYB83<----------DOF2      ---------->DOF2   <---------YAB1   gtggtagaagaggcagtgtgtgctagtgttaaacctcccttatgttgcttcattgtgaaaacttttgtgaaaggaagtagagatgtatgattcttccctt  5143600  Previous    Next  AGI:  At5g15750.1    Description:  RNA-binding S4 domain-containing protein. similar to hypothetical protein [Cleome spinosa] (GB:ABD96845.1); contains InterPro domain RNA-binding S4; (InterPro:IPR002942); contains InterPro domain Ribosomal protein S4; (InterPro:IPR001912) Range:  from: 5141106    to: 5142869    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g15760.1    Description:  plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative. Identical to Plastid-specific 30S ribosomal protein 3-2, chloroplast precursor [Arabidopsis Thaliana] (GB:Q9LFV0); similar to plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative [Arabidopsis thaliana] (TAIR:AT1G68590.2); similar to plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative [Arabidopsis thaliana] (TAIR:AT1G68590.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96848.1); contains InterPro domain Ribosomal protein, PSRP-3/Ycf65; (InterPro:IPR006924) Range:  from: 5143056    to: 5144056    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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